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Survival Of White-Tailed Deer Fawns In The Grasslands Of The Northern Great Plains, Troy W. Grovenburg, Robert W. Klaver, Jonathan A. Jenks Jul 2012

Survival Of White-Tailed Deer Fawns In The Grasslands Of The Northern Great Plains, Troy W. Grovenburg, Robert W. Klaver, Jonathan A. Jenks

Natural Resource Management Faculty Publications

Environmental factors, such as forest characteristics, have been linked to fawn survival in eastern and southern white-tailed deer ( Odocoileus virginianus) populations. In the Great Plains, less is known about how intrinsic and habitat factors influence fawn survival. During 2007-2009, we captured and radiocollared 81 fawns in north-central South Dakota and recorded 23 mortalities, of which 18 died before 1 September. Predation accounted for 52.2% of mortality; remaining mortality included human (hunting, vehicle, and farm accident; 26.1%) and hypothermia (21.7%). Coyotes (Canis latrans) accounted for 83.3% of predation on fawns. We used known-fate analysis in Program MARK to estimate summer …


Effects Of Prescribed Fire On Ozark Ant Ecology, Robin Michelle Verble Jun 2012

Effects Of Prescribed Fire On Ozark Ant Ecology, Robin Michelle Verble

Theses and Dissertations

Fires are among the most conspicuous disturbances affecting leaf litter communities, and are sources of both direct and indirect insect mortality. Fires historically occurred on the Ozark landscape at high frequencies, and modern forest managers utilize prescribed fire to restore and maintain those ecosystems. I examined fire effects at multiple scales, ranging from post-fire patterns in leaf litter arthropod community structure to responses of individual organisms to heat stress. This dissertation summarizes the history of fire occurrences in Ozark forests of Arkansas. It then unifies the results of four observational and experimental studies designed to assess how Ozark forest ant …


Two Boundaries Separate Borrelia Burgdorferi Populations In North America, Gabriele Margos, Jean I. Tsao, Santiago Castillo-Ramirez, Yvette A. Girard, Anne G. Hoen Jun 2012

Two Boundaries Separate Borrelia Burgdorferi Populations In North America, Gabriele Margos, Jean I. Tsao, Santiago Castillo-Ramirez, Yvette A. Girard, Anne G. Hoen

Dartmouth Scholarship

Understanding the spread of infectious diseases is crucial for implementing effective control measures. For this, it is important to obtain information on the contemporary population structure of a disease agent and to infer the evolutionary processes that may have shaped it. Here, we investigate on a continental scale the population structure of Borrelia burgdorferi, the causative agent of Lyme borreliosis (LB), a tick-borne disease, in North America. We test the hypothesis that the observed d population structure is congruent with recent population expansions and that these were preceded by bottlenecks mostly likely caused by the near extirpation in the 1900s …


Fecal Near Infrared Spectroscopy To Discriminate Physiological Status In Giant Pandas., Erin E. Wiedower, Andrew J. Kouba, Carrie K. Vance, Rachel L. Hansen, Jerry W. Stuth, Douglas R. Tolleson Jun 2012

Fecal Near Infrared Spectroscopy To Discriminate Physiological Status In Giant Pandas., Erin E. Wiedower, Andrew J. Kouba, Carrie K. Vance, Rachel L. Hansen, Jerry W. Stuth, Douglas R. Tolleson

CALS Publications

Giant panda (Ailuropoda melanoleuca) monitoring and research often require accurate estimates of population size and density. However, obtaining these estimates has been challenging. Innovative technologies, such as fecal near infrared reflectance spectroscopy (FNIRS), may be used to differentiate between sex, age class, and reproductive status as has been shown for several other species. The objective of this study was to determine if FNIRS could be similarly used for giant panda physiological discriminations. Based on samples from captive animals in four U.S. zoos, FNIRS calibrations correctly identified 78% of samples from adult males, 81% from adult females, 85% from adults, 89% …


Climate's Role In Polar Bear Past [Letters], Kurt E. Galbreath, Joseph A. Cook, Eric P. Hoberg Jun 2012

Climate's Role In Polar Bear Past [Letters], Kurt E. Galbreath, Joseph A. Cook, Eric P. Hoberg

Harold W. Manter Laboratory of Parasitology: Faculty Publications

Striking temporal concordance between the new date for divergence of polar bears and persistent freezing of the Arctic Ocean suggests that this may be one of relatively few instances in which a specific paleoclimatological episode can be convincingly linked to a specific evolutionary event, and it provides vivid demonstration of climatic forcing as a determinant of diversification in biological systems.


Wild Justice Redux: What We Know About Social Justice In Animals And Why It Matters, Jessica Pierce, Marc Bekoff Jun 2012

Wild Justice Redux: What We Know About Social Justice In Animals And Why It Matters, Jessica Pierce, Marc Bekoff

Ethology Collection

Social justice in animals is beginning to attract interest in a broad range of academic disciplines. Justice is an important area of study because it may help explain social dynamics among individuals living in tightly- knit groups, as well as social interactions among individuals who only occasionally meet. In this paper, we provide an overview of what is currently known about social justice in animals and offer an agenda for further research. We provide working definitions of key terms, outline some central research questions, and explore some of the challenges of studying social justice in animals, as well as the …


Policy On Habitat Enhancement Structures In Western Australia, Department Of Fisheries Western Australia. Jun 2012

Policy On Habitat Enhancement Structures In Western Australia, Department Of Fisheries Western Australia.

Fisheries Management Papers

Habitat enhancement structures range widely in design. They generally aim to enhance fish habitat by providing a structure for fish and other aquatic life to colonise and potentially lead to an increase in their biological production.

The primary function of an artificial reef is to provide additional structure and habitat to support an increased production of fish ad other aquatic organisms.


Quantitative Acoustic Analysis Of The Vocal Repertoire Of The Golden Rocket Frog (Anomaloglossus Beebei), Beth A. Pettitt, Godfrey R. Bourne, Mark A. Bee Jun 2012

Quantitative Acoustic Analysis Of The Vocal Repertoire Of The Golden Rocket Frog (Anomaloglossus Beebei), Beth A. Pettitt, Godfrey R. Bourne, Mark A. Bee

Biology Faculty Publications

This study describes the vocal repertoire of the Guyanan golden rocket frog, Anomaloglossus beebei, a bromeliad specialist with biparental care. Using multivariate analyses of nine call properties, as well as the occurrence of nonlinear phenomena, three signal types were distinguished—advertisement, courtship, and aggressive calls. Although all three call types were composed of a short series of rapidly repeated pulses, advertisement calls were produced at higher amplitudes and had longer pulse durations than both courtship calls and aggressive calls. Courtship calls exhibited lower dominant frequencies than both advertisement and aggressive calls, which had similar dominant frequencies. Aggressive calls had more …


Monitoring Standing Herbage Of Mid-Grass Prairie On The Fort Pierre National Grassland, South Dakota, Daniel W. Uresk Jun 2012

Monitoring Standing Herbage Of Mid-Grass Prairie On The Fort Pierre National Grassland, South Dakota, Daniel W. Uresk

The Prairie Naturalist

Monitoring vegetation with a modified Robel pole on the Fort Pierre National Grassland was evaluated for combined shallow clay and loamy overflow ecological sites (dominated by warm-season grasses), and for clayey ecological sites (dominated by cool-season grasses). My objectives were to 1) develop a relationship between visual obstruction readings (VOR) and standing herbage, 2) provide guidelines for vegetation monitoring, and 3) evaluate vegetation monitoring during the growing season for clayey ecological sites. The relationship between visual obstruction readings and standing herbage was linear and regression coefficients were highly significant (P < 0.001) for both ecological types. Cluster analyses for shallow clay and loamy overflow ecological sites grouped the VOR and standing herbage (kg•ha-1) into 4 resource categories. Monitoring with 4 transects will provide adequate information to estimate standing herbage within 259 ha (1 section). Three resource categories (VOR + herbage) for clayey ecological sites were defined by cluster analyses. Monitoring with 4 transects was determined to provide reliable estimates of standing herbage. July validation of vegetation with the developed clayey ecological site model will provide reliable monitoring of standing herbage from July through November for this ecological site.


Five New Records Of Ants (Hymenoptera: Formicidae) For Nebraska, Kristine T. Nemec, James C. Trager, Elizabeth Manley, Craig R. Allen Jun 2012

Five New Records Of Ants (Hymenoptera: Formicidae) For Nebraska, Kristine T. Nemec, James C. Trager, Elizabeth Manley, Craig R. Allen

The Prairie Naturalist

Ants are ubiquitous and influential organisms in terrestrial ecosystems. About 1,000 ant species occur in North America, where they are found in nearly every habitat (Fisher and Cover 2007). Ants are critical to ecological processes and structure. Ants affect soils via tunneling activity (Baxter and Hole 1967), disperse plant seeds (Lengyel et al. 2009), prey upon a variety of insects and other invertebrates (Way and Khoo 1992, Folgarait 1998), are often effective primary consumers through their prodigious consumption of floral and especially extrafloral nectar, and honeydew (Tobin 1994), and serve as prey for invertebrates (Gotelli 1996, Gastreich 1999) and vertebrates …


Microhabitat Selection By Bobcats In The Badlands And Black Hills Of South Dakota, Usa: A Comparison Of Prairie And Forested Habitats, Cory E. Mosby, Troy W. Grovenburg, Robert W. Klaver, Greg M. Schroeder, Lowell E. Schmitz, Jonathan A. Jenks Jun 2012

Microhabitat Selection By Bobcats In The Badlands And Black Hills Of South Dakota, Usa: A Comparison Of Prairie And Forested Habitats, Cory E. Mosby, Troy W. Grovenburg, Robert W. Klaver, Greg M. Schroeder, Lowell E. Schmitz, Jonathan A. Jenks

The Prairie Naturalist

An understanding of habitat selection is important for management of wildlife species. Although bobcat (Lynx rufus) resource selection has been addressed in many regions of the United States, little work has been conducted in the Northern Great Plains. From 2006–2008 we captured and radiocollared 20 bobcats in the Badlands (n = 10) and Black Hills (n = 10) regions of South Dakota. During the summers of 2008 and 2009 we collected habitat measurements at 349 (176 Badlands, 176 Black Hills) bobcat locations and 321 (148 Badlands, 173 Black Hills) random sites. Microhabitat characteristics at bobcat use sites varied with region …


Distribution And Diversity Of Ant Genera From Selected Ecoregions Across Nebraska, Jessica Jurzenski, Marc Albrecht, W. Wyatt Hoback Jun 2012

Distribution And Diversity Of Ant Genera From Selected Ecoregions Across Nebraska, Jessica Jurzenski, Marc Albrecht, W. Wyatt Hoback

The Prairie Naturalist

We documented distribution and diversity of ant genera in four of the six-level III ecoregions across Nebraska. We sampled ants using bait cards, pitfall traps, and by opportunistic sampling, including direct collection and in carrion-baited pitfall traps. We identified 22 genera from five subfamilies, which were further classified into six functional groups. In common with other Great Plains states, Formica Linnaeus and Lasius Fabricius occurred most frequently in our samples, and overall ant genus-level richness was comparable to surrounding states. We compared genera similarity using Jaccard’s similarity index within and between the High Plains (western-most) and Western Corn Belt Plains …


Topographic Home Range Of Large Mammals: Is Planimetric Home Range Still A Viable Method?, W. David Walter, Justin W. Fischer, Teresa J. Frink, Scott E. Hygnstrom, Jonathan A. Jenks, Kurt C. Vercauteren Jun 2012

Topographic Home Range Of Large Mammals: Is Planimetric Home Range Still A Viable Method?, W. David Walter, Justin W. Fischer, Teresa J. Frink, Scott E. Hygnstrom, Jonathan A. Jenks, Kurt C. Vercauteren

The Prairie Naturalist

Topography influences movement trajectories, quality of forages used, and behavioral response of large herbivores to anthropogenic disturbances, but research is lacking on the influence of terrain complexity on size of home range. Size of home range usually is based on planimetric area and therefore rarely accounts for the true surface area traversed by an animal. We conducted radiotelemetry on bighorn sheep (Ovis canadensis), Rocky Mountain elk (Cervus elaphus), mule deer (Odocoileus hemionus), and white-tailed deer (O. virginianus) equipped with VHF collars at three sites from 2002 to 2006 to document size of home range in areas that ranged from 400 …


Concurrent Effects Of Resource Pulse Amount, Type, And Frequency On Community And Population Properties Of Consumers In Detritus-Based Systems, Donald A. Yee, Steven A. Juliano Jun 2012

Concurrent Effects Of Resource Pulse Amount, Type, And Frequency On Community And Population Properties Of Consumers In Detritus-Based Systems, Donald A. Yee, Steven A. Juliano

Faculty Publications

Episodic resource inputs (i.e., pulses) can affect food web properties and community dynamics, but detailed mechanistic understanding of such effects remain elusive. Natural aquatic microsystems (e.g., tree holes, human-made containers) are colonized by invertebrates that form complex food webs dependent on episodic and sometimes sizeable inputs of allochthonous detritus from adjacent terrestrial environments. We investigated how variation in pulse frequency, amount, and resource type interacted to affect richness, abundance, composition, and population sizes of colonizing invertebrates in water-filled tires and tree hole analogs in a forest habitat. Different container types were used to assess the generality of effects across two …


Exploring The Houtman Abrolhos Islands, Western Australia. Department Of Fisheries Jun 2012

Exploring The Houtman Abrolhos Islands, Western Australia. Department Of Fisheries

Fisheries Occasional Publications

This booklet is designed to assist you in exploring and appreciating the Houtman Abrolhos Islands. It provides a general overview on the attributes of the Abrolhos that make it so unique. A place rich in ecological, historical, economic and cultural significance for Western Australia.

Apart from being an introduction to the Abrolhos, the booklet also provides background and context for the various management plans and strategies developed and implemented to sustainably manage these Islands and their surrounding waters.


Investigating The Role Of An Understudied North Atlantic Right Whale Habitat: Right Whale Movement, Ecology, And Distribution In Jeffreys Ledge, Kathryn Longley Jun 2012

Investigating The Role Of An Understudied North Atlantic Right Whale Habitat: Right Whale Movement, Ecology, And Distribution In Jeffreys Ledge, Kathryn Longley

Graduate Masters Theses

The critically endangered North Atlantic right whale (Eubalaena glacialis) consistently visits five major habitats throughout the year; however, they are known to visit additional habitats. This project examines the role of Jeffreys Ledge as an additional habitat of importance for this species by investigating three aspects of its distribution and ecology. I first addressed the relationship of Jeffreys Ledge to a known significant right whale feeding ground, Cape Cod Bay, by quantifying the movement of right whales between the two habitats and comparing demographic characteristics of right whales seen in these habitats. Secondly, I measured the quality of the zooplankton …


Least And Merriam’S Shrews From Banner County, Nebraska, Jennifer N. Merlino, Alexandra R. Frohberg, Jamie Harmon, Keith Geluso Jun 2012

Least And Merriam’S Shrews From Banner County, Nebraska, Jennifer N. Merlino, Alexandra R. Frohberg, Jamie Harmon, Keith Geluso

The Prairie Naturalist

Four species of shrews occur in the panhandle of western Nebraska – the masked shrew (Sorex cinereus), Merriam’s shrew (S. merriami), dwarf shrew (S. nanus), and least shrew (Cryptotis parva; Genoways et al. 2008). Little information is known regarding the distribution and habitat of those species due to few captures of individuals throughout the region (e.g., Jones 1964, Freeman et al. 1993, Benedict et al. 1999, 2000, Geluso et al. 2004). To date, no shrew has been reported from the southwestern part of the panhandle in Banner, Kimball, or Cheyenne counties. Here we present distributional records for the least shrew …


Spatiotemporal Variation In Vegetation Structure Resulting From Pyric-Herbivory, Sherry Leis, Lloyd W. Morrison, Michael D. Debacker Jun 2012

Spatiotemporal Variation In Vegetation Structure Resulting From Pyric-Herbivory, Sherry Leis, Lloyd W. Morrison, Michael D. Debacker

The Prairie Naturalist

Pyric-herbivory is a process that is widely assumed to create greater habitat heterogeneity in grasslands at the landscape scale than could be achieved by either fire or grazing alone. Yet, few studies have actually quantified the effects of pyric- herbivory on vegetation structure within layers of the grass canopy. Here we quantify the effects of pyric-herbivory on a pasture at Tallgrass Prairie National Preserve in Kansas. We subdivided the pasture into three patches and burned one patch each year in a three-year rotation. We estimated visual obstruction for 25-cm strata and recorded maximum vegetation height. We found that recently burned …


Sickleweed On The Fort Pierre National Grassland: An Emerging Threat, Jack L. Bulter, Stefanie D. Wacker Jun 2012

Sickleweed On The Fort Pierre National Grassland: An Emerging Threat, Jack L. Bulter, Stefanie D. Wacker

The Prairie Naturalist

We report the first detailed field survey of sickleweed (Falcaria vulgaris L.) in the United States. Sickleweed is native to Europe, the Mediterranean, Asia Minor, and Iran and was first reported in the United States in 1922. It is listed by the Nebraska Invasive Species Council as a Category II invasive plant species. In recent years, abundance and distribution of sickle- weed has increased dramatically in and around the Fort Pierre National Grassland (FPNG), South Dakota. Management of such a rapidly expanding population is hampered by a general lack of baseline information on the biology and ecology of sickleweed. We …


Spatial Ecology Of Urban Raccoons In Northeastern Ohio: Implications For Oral Rabies Vaccination, Are R. Berentsen, Mike R. Dunbar, Chadd E. Fitzpatrick, W. David Walter Jun 2012

Spatial Ecology Of Urban Raccoons In Northeastern Ohio: Implications For Oral Rabies Vaccination, Are R. Berentsen, Mike R. Dunbar, Chadd E. Fitzpatrick, W. David Walter

The Prairie Naturalist

In 1977, rabies was detected in a raccoon (Procyon lotor) in West Virginia, and since the mid-1980s raccoon variant rabies has spread throughout the eastern United States and moved west as far as the eastern edge of Cleveland, Ohio. The primary tool to combat this spread is the distribution of oral rabies vaccine (ORV) baits. A thorough knowledge of raccoon space use is critical in determining bait placement, particularly in urban areas. We monitored nine raccoons in urban areas of Cleveland, Ohio, calculated home range sizes, monitored raccoon movement with respect to potential movement barriers, and used resource selection functions …


Seasonal Food Habits Of Burrowing Owls (Athene Cunicularia) In Human-Altered Landscapes, Carie Marie Wingert Jun 2012

Seasonal Food Habits Of Burrowing Owls (Athene Cunicularia) In Human-Altered Landscapes, Carie Marie Wingert

Master's Theses

In 2004, I initiated a year-long study to investigate the food habits of burrowing owls (Athene cunicularia). Burrowing owls have been found in a variety of human-altered landscapes; however, little is known about burrowing owl food habits in urban landscapes. Burrowing owl food habits during the non-breeding season are also largely undocumented, despite increasing concern over the survival of overwintering burrowing owls. Differences in prey consumption between reproductive and non-reproductive owls during the breeding season have not yet been examined. I collected pellets over a 12 month period at four study sites affected by different levels of human …


The Dynamics Of Location: Influence Of Predation By Chaoborus Larvae On Rotifer Diel Vertical Migration Patterns, Kristina P. Riemer May 2012

The Dynamics Of Location: Influence Of Predation By Chaoborus Larvae On Rotifer Diel Vertical Migration Patterns, Kristina P. Riemer

Lawrence University Honors Projects

The locations of freshwater organisms in lakes are determined by the convergence of many competing factors. While predation pressure is one of these, also important are areas of food concentration and the physical and chemical constraints of a system. Diel vertical migration is a behavior exhibited by freshwater organisms in many taxa that is the result of balancing these factors. Diel vertical migration consists of movement by these organisms throughout the water column in accordance with a 24 hour cycle. This oscillation is generally driven by the competing factors of predation pressure and food acquisition, and is modified by physical …


Squalicorax Chips A Tooth: A Consequence Of Feeding-Related Behavior From The Lowermost Navesink Formation (Late Cretaceous: Campanian-Maastrichtian) Of Monmouth County, New Jersey, Usa, Martin A. Becker, John A. Chamberlain Jr. May 2012

Squalicorax Chips A Tooth: A Consequence Of Feeding-Related Behavior From The Lowermost Navesink Formation (Late Cretaceous: Campanian-Maastrichtian) Of Monmouth County, New Jersey, Usa, Martin A. Becker, John A. Chamberlain Jr.

Publications and Research

Chipped and broken functional teeth are common in modern sharks with serrated tooth shape. Tooth damage consists of splintering, cracking, and flaking near the cusp apex where the enameloid is broken and exposes the osteodentine and orthodentine. Such damage is generally viewed as the result of forces applied during feeding as the cusp apex impacts the skeletal anatomy of prey. Damage seen in serrated functional teeth from sharks Squalicorax kaupi [1] and Squalicorax pristodontus [1] from the late Cretaceous lowermost Navesink Formation of New Jersey resembles that occurring in modern sharks and suggests similar feeding behavior. Tumbling experiments using serrated …


Phylogenetic Relationships And Character Evolution Of The Neotropical Butterfly Genus Hamadryas (Nymphalidae: Biblidinae), Ivonne J. Garzon May 2012

Phylogenetic Relationships And Character Evolution Of The Neotropical Butterfly Genus Hamadryas (Nymphalidae: Biblidinae), Ivonne J. Garzon

LSU New Orleans Theses and Dissertations

The butterflies in the genus Hamadryas are popular and noticeable representatives of the Neotropical Lepidoptera fauna. After a thorough taxonomic revision, 20 species were acknowledged within the genus, however no hypothesis of their phylogenetic relationship was proposed. The present dissertation provides a step further into the understanding of this fascinating group of butterflies not only by proposing the first phylogenetic hypothesis for the genus based on morphological and molecular data, but also by exploring for the first time in a group of butterflies the potential effect of venation associated with an specific behaviour on wing shape. Furthermore, this dissertation provides …


Fish Assemblage Dynamics And Red Drum Habitat Selection In Bayou St. John And Associated Urban Waterways Located Within The City Of New Orleans, Louisiana, Patrick W. Smith Mr. May 2012

Fish Assemblage Dynamics And Red Drum Habitat Selection In Bayou St. John And Associated Urban Waterways Located Within The City Of New Orleans, Louisiana, Patrick W. Smith Mr.

LSU New Orleans Theses and Dissertations

Bayou St. John (BSJ) and City Park Lakes and Lagoons (CPLL) are urban waterways in New Orleans, Louisiana. I studied habitat selection of red drum in BSJ, and fish assemblage change in BSJ and CPLL over 40 years. Temperature was found to be the best predictor of red drum habitat selection in Bayou St. John, while salinity and change in depth also were found to be good predictors for certain sites. Potential prey item abundance did not appear to influence habitat selection. Using data from 1971 – 2010, nearshore habitats in CPLL were affected by Hurricane Katrina, but have sense …


Devil In A Hula Skirt: Comparative Conservation Efforts Between The United States And Australia Using Two Endemic Species As Case Studies, Sarah Catherine Kuchinsky May 2012

Devil In A Hula Skirt: Comparative Conservation Efforts Between The United States And Australia Using Two Endemic Species As Case Studies, Sarah Catherine Kuchinsky

Undergraduate Honors Thesis Collection

There is a biodiversity crisis in our midst. An abundance of technology and innovation in the last 200 years has revamped our world but at the cost of pushing many species to extinction. Since the passing of the Endangered Species Act by Congress in 1973, more than 100 species in the United States have disappeared (Wilson 2006). The International Union for the Conservation of Nature (IUCN) stats that "19,265 species out of the 59,507 so far assessed as threatened with extinction," (IUCN 2011). Extinction is the result of a combination of factors caused by human environmental disturbance. Disturbances in the …


Implications Of Land Development On Nomadic Pastoralism: Ecological Relaxation And Biosocial Diversity In Human Populations, Hannah R. Bradley May 2012

Implications Of Land Development On Nomadic Pastoralism: Ecological Relaxation And Biosocial Diversity In Human Populations, Hannah R. Bradley

Scripps Senior Theses

Nomadic pastoralism is an ancient subsistence strategy, historically balanced and in continuity with sedentary societies. Sedentarization of nomads occurs normally because of ecological disasters, economic opportunities, urbanization, and government policy. In this paper, I examine the effect of changing land use patterns on nomadic pastoral populations in Asia, Africa, and the Middle East, using biogeographic methodology to further explore the contemporary relationship between humans and their environments. Nomadic population information gleaned from diverse ethnographic studies, and GIS data on anthropogenic biome distributions, were used to calculate changes in nomadic population, area of developed land, and nomadic/sedentary population density over the …


Pre-Whaling Genetic Diversity And Population Ecology In Eastern Pacific Gray Whales: Insights From Ancient Dna And Stable Isotopes, S Elizabeth Alter, Seth D. Newsome, Stephen R. Palumbi May 2012

Pre-Whaling Genetic Diversity And Population Ecology In Eastern Pacific Gray Whales: Insights From Ancient Dna And Stable Isotopes, S Elizabeth Alter, Seth D. Newsome, Stephen R. Palumbi

Publications and Research

Commercial whaling decimated many whale populations, including the eastern Pacific gray whale, but little is known about how population dynamics or ecology differed prior to these removals. Of particular interest is the possibility of a large population decline prior to whaling, as such a decline could explain the ,5-fold difference between genetic estimates of prior abundance and estimates based on historical records. We analyzed genetic (mitochondrial control region) and isotopic information from modern and prehistoric gray whales using serial coalescent simulations and Bayesian skyline analyses to test for a pre-whaling decline and to examine prehistoric genetic diversity, population dynamics and …


Evolution Of The Bacteriorhodopsin Gene Bop In Haloarchaea, Maulik Jitesh Jani May 2012

Evolution Of The Bacteriorhodopsin Gene Bop In Haloarchaea, Maulik Jitesh Jani

Honors Scholar Theses

Rhodopsins are among the most studied protein families. They all incorporate a light based chromophore and an opsin. They are found in all three domains of life and can be found in diverse environments, such as the membrane of the haloarchaea, Haloarcula (Haa) marismortui, growing on salt flats in Death Valley, to within human tissues and deep sea water (Briggs and Spudich 2005). Rhodopsins can serve multifarious purposes, from phototaxis away from harmful light to efficient energy generation. Bacteriorhodopsin is the best studied rhodopsin in haloarchaea. The evolutionary pattern of bacteriorhodopsin through its gene, bop, is the main focus of …


An Approach For Use Of Dual Frequency Identification Sonar (Didson) To Quantify Behavioral Aspects Of Piscivory At Ecologically Relevant Time And Space Scales, Victoria E. Price May 2012

An Approach For Use Of Dual Frequency Identification Sonar (Didson) To Quantify Behavioral Aspects Of Piscivory At Ecologically Relevant Time And Space Scales, Victoria E. Price

Master's Theses

Predator-prey interactions of large vagile fishes are difficult to study in the ocean due to limitations in the space and time requirements for observations. Small-scale direct underwater observations by divers (<10m >radius) and large-scale hydroacoustic surveys (10s - 100s km2) are traditional approaches. However, large piscivorous predators identify and attack prey at the scale of meters to tens of meters. Dual- Frequency Identification Sonar, or DIDSON, is a high-resolution acoustic camera operating in the MHz range that provides detailed continuous video-like imaging of objects out to 30 m range. This technology can be used to observe predator-prey interactions at ecologically …