Digital Commons Network^™

Nesting Trends Of The Green (Chelonia Mydas) And Hawksbill (Eretmochelys Imbricata) Turtles On Misali Island, Pemba, Thaowan Giorno, Megan Herrmann

Independent Study Project (ISP) Collection

Misali Island, one of the first conservation areas in Zanzibar, is considered an important nesting ground for the Green and Hawksbill turtles. This study was conducted to present results on the nesting and hatching trends on Misali Island by using data collected since 2002. Thorough statistical analyses were used on these data in order to find patterns in the nesting trends of these two species, and identify any significant differences that have occurred over the years. Overall, there has been a steady decline in the number of nesting and hatching events, but no statistically significant trends were found in terms …

Applying Global Criteria To Tracking Data To Define Important Areas For Marine Conservation, Ben Lascelles, P. Taylor, M. Miller, M. Dias, S. Oppel, L. Torres, A. Hedd, M. Le Corre, R Phillips, Scott A. Shaffer, H. Weimerskirch, C. Small

Faculty Publications, Biological Sciences

Aim Enhanced management of areas important for marine biodiversity are now obligations under a range of international treaties. Tracking data provide unparalleled information on the distribution of marine taxa, but there are no agreed guidelines that ensure these data are used consistently to identify biodiversity hotspots and inform marine management decisions. Here, we develop methods to standardize the analysis of tracking data to identify sites of conservation importance at global and regional scales. Location We applied these methods to the largest available compilation of seabird tracking data, covering 60 species, collected from 55 deployment locations ranging from the poles to …

Nutrient Cycling In The Amazon: A Comparison Of Soil Characteristics, Insects, Root Types And Decomposition Rates Between Varzea And Terra Firme Habitats In The Ecuadorian Amazon, Mira Ensley-Field

Independent Study Project (ISP) Collection

Decomposition and nutrient cycling form the basis of every ecosystem. Nutrient availability in the soil affects plant species composition, richness, and productivity. The Amazon rainforest is known for its unusually fast nutrient cycle, but many aspects lack detailed study and analysis. This comparative study carried out in the Ecuadorian Amazon had four primary objectives related to understanding the nutrient cycle in the Amazon; 1.) analyze soil characteristics, 2.) assess insect diversity in the leaf litter layer, 3.) examine root characteristics, and 4.) measure the decomposition rate between Varzea and Terra Firme habitats alongside the Rio Napo. Forty 0.25 x 0.25m …

Foraging Time And Food Resource Use Of Geoffroy’S Tamarin (Saguinus Geoffroyi) In An Urban Forest Landscape, Parque Natural Metropolitano, Ciudad De Panamá, Panamá, Rachael Pruitt

Independent Study Project (ISP) Collection

Saguinus geoffroyi, a small neotropical primate that ranges from the Chocó region of Colombia along the Pacific coast of Panamá to the eastern side of the Azuero peninsula. They are known to be a disturbance tolerant species and are mostly found in secondary growth and forest edges where understory growth is moderately dense. They have 3 main food sources: insects, small fruits and exudates (plant saps), which are located in different layers of the forest, although the composition of these may change depending on the season. This study attempted to determine the common food resources, foraging time and location of …

Global Phylogeny Of The Water Penny Beetles Using Both Molecular And Morphological Evidence (Co, Mathew Vincent Wood

Masters Theses & Specialist Projects

The Psephenidae is a family of freshwater beetles usually found in swift streams worldwide. Their unique disc shaped and flattened larvae have made this a group of interest for scientists for centuries. Morphologically, this family has been relatively well researched, and systematically the family is fairly well known and supported as monophyletic. One issue with Psephenidae, and with many other insect groups, is the lack of the molecular phylogenetic analyses to test morphology hypothesizes.

After successfully sequencing these two genes from species representing nearly all of the known genera, the data were analyzed using both Bayesian and parsimony methods. Analyses …

Occupancy Rates And Detection Probabilities Of Red-Backed Salamanders On The Virginia Fall Line, Jay D. Mcghee

Virginia Journal of Science

To meet the conservation needs of declining amphibian populations, there is a need to assess monitoring techniques in various habitat types and seasons. I assessed detection rates and proportion of area occupied via transect monitoring for red-backed salamanders at a site along the Virginia Fall Line in Doswell, Virginia. I established 24 transects in a 3.2-ha area in both riparian and upland habitats. Objects providing natural cover along these transects were sampled 3 times a week in fall and spring over a two-year period. Models of occupancy and detection were developed and compared using Akaike’s Information Criterion. Based on 113 …

Effect Of Varied Disturbance Types On Dorylus (Anomma) Molestus Defensive Behavior In The West Usumbara Mountains, Tanzania., Ryan Mahar

Independent Study Project (ISP) Collection

The purpose of this study was to observe novel nest characteristics of Dorylus molestus (Siafu), as well as their defensive behavior in response to varied disturbance methods. The number of defensive soldiers at a specific section of a column was counted before and after each agitation. Varied agitation methods were used on columns without larvae presence to test how soldiers responded to different disturbance types. Disturbances on columns with larvae presence were compared to those on columns without larvae. Nest distribution, behavior, composition, and size were observed objectively. Mechanical disturbance was found to incite the greatest increase in defensive soldier …

The Use Versus Availability Of Wood Extraction At The Baga Ii Forest Reserve Border Adjacent To Kizanda Village In The West Usambara Mountains, Tanzania, Rebecca Halter

Independent Study Project (ISP) Collection

Tropical forests, especially in developing countries, continue to face serious threats of deforestation due to human pressures and poor management. These forests are at risk of disappearing and taking their water catchment and ecosystem services with them. Kizanda Villagers’ illegal woodfuel and polewood extraction poses a threat to the future health and existence of the Baga II Forest. This study, conducted from April 5th to April 19th, 2016, aimed to examine the use versus availability of tree species along the forest border. Twenty disturbance transects, each 4 meters wide, were conducted perpendicular to the Baga II forest border. The transects …

Population And Morphological Changes In American Kestrels Through Space And Time, Teresa E. Ely

School of Biological Sciences: Dissertations, Theses, and Student Research

A once common raptor, the American kestrel (Falco sparverius) has experienced population declines in the last two decades throughout North America. Many hypotheses exist about the decline, including mortality from West Nile virus, rodenticide poisoning, climate change, an increase in predators, and core habitat loss or degradation, which could influence food availability. Food availability is key to raptor survival and reproduction, and changes in food availability throughout the year can have lifelong effects on size and body condition. Here we examine how morphology, specifically mass and wing chord, has changed at seven migration sites throughout North America as …

Nestmate Recognition In Odorous House Ants (Tapinoma Sessile): Effects Of Social Plasticity, Urbanization, And Laboratory Maintenance, Timothy J. Luttermoser

Open Access Theses

Odorous house ants (Tapinoma sessile) are a widespread North American ant species and common nuisance pest. In addition to their pest status, odorous house ants are of interest as a model system for understanding the factors that lead to variable queen number and nesting strategy across ants, as well as possible insight into common traits of exotic invasive (or “tramp”) ant species. While T. sessile is native to North America, in urban environments it forms large supercolonies with many queens and nest sites connected by trails, similar to a variety of exotic invasive ants, most of which are …

Wildlife Underpasses: Frequency Of Use By Neotropic Mammals In Parque Natural Metropolitano, Panamá City, Panamá, Kelly Russo

Independent Study Project (ISP) Collection

In a world of ever increasing globalization and urbanization, roads present wildlife with a number of challenges. They fragment habitats, disrupt animal movements, impact reproductive success and the fitness of individuals and populations, alter population dynamics, and cause unnatural levels of mortality. Fortunately, the numerous detrimental effects of roads can be alleviated by the proper implementation of mitigation structures, such as underpasses, sky bridges and vegetated overpasses. These mitigation structures are an important source of genetic connectivity, especially in a peri-urban reserve setting. This study seeks to understand what species of mammal utilize the wildlife underpasses below Via La Amistad, …

Assessing The Impact Of Historical Story Telling On Student Learning Of Natural Selection, Janice Marie Fulford

Dissertations

Research suggests that because of its historical nature, the learning of evolutionary biology is problematic compared to that of other science disciplines. While explanations used in historical sciences often employ historical narratives, which are distinct from narratives in other contexts, such as stories, the two types of narratives have structural similarities that suggest the potential role of stories based in the history of science for the teaching of evolutionary biology. Stephen Klassen, a prominent science educator, has studied how stories from the history of physics can promote the learning of and attitudes towards science. Klassen’s pioneering work identifies structural components …

L’Insecte Sage In The Age Of Global Climate Crisis: A Biocultural And Ontological Study Of Vulnerability And Resilience In The Manakara Beekeeping Network, Tamar Law

Independent Study Project (ISP) Collection

The effects of climate change are felt unevenly throughout the globe. Impoverished populations with high levels of subsistence agriculture are particularly vulnerable due to their direct dependence on the land. However, these populations are also the possible agents of change and solutions, as their traditional ecological knowledge has evolved in relation to their context. The honeybee is directly implicated in climate change vulnerability due to its role in pollination services, by ensuring food security. In the past decade, honeybees have risen to international fame and scrutiny due to a global vanishing of bees, attributed in part to climate change and …

Avifaunal Community Composition In A Tropical Forest Corridor: A Case Study From The Atherton Tableland, North Queensland, Don Jones

Independent Study Project (ISP) Collection

Bird communities in tropical forest ecosystems are highly threatened by habitat loss and fragmentation. Replanted corridors connecting isolated forest remnants are a popular method of ameliorating certain negative impacts of habitat fragmentation. Such linkages can theoretically facilitate greater dispersal, increase gene flow, and reduce the risk of local extinctions in forest birds. However, relatively few studies have examined the utilization of reforested corridors by birds, and little hard data exists to support claims that this type of resource and time intensive project is the best use of often scarce funding for conservation. This study examined the avifaunal community present in …

Epigeal Fauna Of Bosque Protector Cerro Candelaria, Justine Albers

Independent Study Project (ISP) Collection

Pitfall traps are commonly used to sample epigeal fauna, and are especially utilized for the collection of ground-dwelling arthropods; however, this sampling method has yet to be employed in Cerro Candelaria, a protected cloud forest reserve in Tungurahua, Ecuador. Pitfall trap systems were established at two different sites in the reserve that differed in elevation and forest type. Although individuals from 4 different phlya, 11 classes and 17 orders were encountered over the duration of the study, pitfalls were most effective at sampling Coleoptera, which comprised 40% of the total catch across both sites. The two communities of beetle …

Molecular Analysis Confirming The Introduction Of Nile Crocodiles, Crocodylus Niloticus Laurenti 1768 (Crocodylidae), In Southern Florida, With An Assessment Of Potential For Establishment, Spread, And Impacts., Michael R. Rochford, Kenneth L. Krysko, Frank J. Mazzotti, Matthew W. Shirley, Mark W. Parry, Joseph A. Wasilewski, Jeffrey S. Beauchamp, Christpher R. Gillette, Edward F. Metzger Iii, Michiko A. Squires, Louis A. Somma

Papers in Herpetology

The state of Florida, USA, has more introduced herpetofauna than any other governmental region on Earth. Four species of nonnative crocodilians have been introduced to Florida (all since 1960), one of which is established. Between 2000–2014 we field-collected three nonnative crocodilians in Miami-Dade County, Florida, and one in Hendry County, Florida. We used DNA barcoding and molecular phylogenetics to determine species identification and native range origin. Also, we described diet, movement, and growth for one crocodile. Our molecular analyses illustrated that two of the crocodiles we collected are most closely related to Nile Crocodiles (Crocodylus niloticus) from South Africa, suggesting …

Experimental Demonstration Of An Allee Effect In Microbial Populations, Rajreni B. Kaul, Andrew M. Kramer, Fred C. Dobbs, John M. Drake

OES Faculty Publications

Microbial populations can be dispersal limited. However, microorganisms that successfully disperse into physiologically ideal environments are not guaranteed to establish. This observation contradicts the Baas-Becking tenet: ‘Everything is everywhere, but the environment selects’. Allee effects, which manifest in the relationship between initial population density and probability of establishment, could explain this observation. Here, we experimentally demonstrate that small populations of Vibrio fischeri are subject to an intrinsic demographic Allee effect. Populations subjected to predationby the bacterivore Cafeteria roenbergensis display both intrinsic and extrinsic demographic Allee effects. The estimated critical threshold required to escape positive densitydependence is around 5, 20 or …

Characterization Of Soundscapes In Shallow Water Habitats Of The Florida Keys (Usa) And Their Influence On The Settlement Of Larval Fish And Invertebrates, John R. Butler

Biological Sciences Theses & Dissertations

In recent decades, changes in climate and water quality in Florida Bay and the Florida Keys (FL, USA) caused expansive cyanobacteria blooms that in turn precipitated massive sponge die-offs that drastically altered sponge-dominated hard-bottom communities in south-central Florida Bay. This area served as a model system to explore the effect of ecosystem change and habitat restoration on underwater soundscapes and larval recruitment. I had four main objectives: (1) characterize the underwater soundscapes of three near-shore, benthic habitats: mangrove islands, seagrass meadows, and hard-bottom (Chapter 2); (2) quantify larval settlement within healthy, degraded, and restored hard-bottom areas to test whether habitat …

A Hitchhiker’S Guide To Invasion Biology: Describing The Ecological Mechanisms Underlying The Range Expansions Of Two Ixodid Tick Species, Robyn M. Nadolny

Biological Sciences Theses & Dissertations

Increasing incidence of many tick-borne diseases have been linked to recent expansions of tick species distributions. Many tick species are expanding their ranges because of anthropogenic changes in the landscape, shifting climatic variables, and increasing populations of suitable host species and tick habitat. Few empirical studies have been performed, however, investigating the ecological mechanisms underlying these range expansions. Ticks are parasitic organisms that disperse across landscape by hitchhiking on hosts, but must then survive in the environment for long periods of time between bloodmeals. Two species of ixodid tick, Ixodes affinis and Amblyomma maculatum, are simultaneously expanding their ranges throughout …

Naturalization Of Salt Marsh Restoration Sites In The Elizabeth River, Virginia, Assessed By Feeding Activity And Trophic Level Of Mummichogs (Fundulus Heteroclitus), Moriah Anne Good

Biological Sciences Theses & Dissertations

Recent efforts to mitigate environmental issues within the Southern Branch of the Elizabeth River, Virginia, designated a “Region of Concern” by the Chesapeake Bay Program, include several salt marsh restorations. By examining gut contents and stable isotopes values (δ13C and δ15N) from mummichogs (Fundulus heteroclitus), the functional equivalency of restored salt marshes compared to natural marshes was measured. In July 2013 I collected mummichogs from three restored and three reference salt marshes in the Southern Branch. Fish were collected for gut content analysis and were analyzed for stable isotopes (δ13C and δ15N).

I removed gut contents from 16 fish per …

Acoustic Detection Reveals Fine-Scale Distributions Of Myotis Lucifugus, Myotis Septentrionalis, And Perimyotis Subflavus In Eastern Nebraska, Jeremy A. White, Cliff Lemen, Patricia Freeman

School of Natural Resources: Faculty Publications

ABSTRACT.—Before white-nose syndrome arrives in Nebraska, it is important to document the preexposure distributions of cave bats in the state. We examined the distributions of Myotis lucifugus (little brown myotis), Myotis septentrionalis (northern long-eared myotis), and Perimyotis subflavus (tri-colored bat) in eastern Nebraska by setting acoustic detectors for a single night at 105 sites in wooded habitats during summers of 2012 and 2014. We compared 2 methods of determining presence at each site. Results of our analyses are fine-scale distributional maps for these bats and some range extensions from published records. Results for M. septentrionalis and P. subflavus are largely …

Diversity-Dependent Cladogenesis Throughout Western Mexico: Evolutionary Biogeography Of Rattlesnakes (Viperidae: Crotalinae: Crotalus And Sistrurus), Christopher Blair, Santiago Sánchez-Ramírez

Publications and Research

Rattlesnakes (Crotalus and Sistrurus) represent a radiation of approximately 42 species distributed throughout the New World from southern Canada to Argentina. Interest in this enigmatic group of snakes continues to accrue due, in part, to their ecomorphological diversity, contributions to global envenomations, and potential medicinal importance. Although the group has garnered substantial attention from systematists and evolutionary biologists for decades, little is still known regarding patterns of lineage diversification. In addition, few studies have statistically quantified broad-scale biogeographic patterns in rattlesnakes to ascertain how dispersal occurred throughout the New World, particularly among the different major biomes of the …

Fine-Scale Spatial Ecology Drives Kin Selection Relatedness Among Cooperating Amoebae, Jeff Smith, Joan E. Strassmann, David C. Queller

Biology Faculty Research

Cooperation among microbes is important for traits as diverse as antibiotic resistance, pathogen virulence, and sporulation. The evolutionary stability of cooperation against “cheater” mutants depends critically on the extent to which microbes interact with genetically similar individuals. The causes of this genetic social structure in natural microbial systems, however, are unknown. Here, we show that social structure among cooperative Dictyostelium amoebae is driven by the population ecology of colonization, growth, and dispersal acting at spatial scales as small as fruiting bodies themselves. Despite the fact that amoebae disperse while grazing, all it takes to create substantial genetic clonality within multicellular …

New Clues To A Mass Extinction: Colby Geologist Robert Gastaldo And Student Researchers Unearth Evidence That Contradicts Prevailing Models About Ancient Die-Offs, Stephen Collins

Colby Magazine

Colby geologists are rewriting deep time history, altering the script of how scientists understand the mother of all mass extinctions—the End-Permian event that occurred approximately 252 million years ago. Or to suggest that they don’t, in fact, understand it.

The Line Drawn On Pain Still Holds, Bjorn H. Merker

Animal Sentience

The many substantive criticisms raised against Key by me and by many of the other commentators will not disappear by ignoring or waving them aside with meta-discourse about anthropomorphism, just-so stories, or celestial teapots. The conceptual edifice Key inhabits and defends with such gusto may look like an impregnable fortress from the inside – and Key behaves as if it were. From the outside, however, it looks more like a ramshackle structure gaping with holes and pieced together from imperfectly understood neuroscience and often faulty literature citations.

Slavery, Welfare And The Sixth Extinction, Stephen R. Clark

Animal Sentience

Ng’s laudable concern for animal welfare would be welcome to any sensible slave-owner wishing to preserve his investment. What welfarism – for slave-owners and animal husbandmen – fails to call into question is whether we have the right to breed, hold captive and kill animals at all: If it matters, as the widely recognized slogan of ‘Five Freedoms’ suggests, that animals have the chance to live a ‘normal’ life, then more matters than keeping them ‘happy’ in subjection. Their lives – and also the lives of wild things – also deserve respect.

Surveys For The Alabama Map Turtle (Graptemys Pulchra) In The Coosa River, Georgia, John B. Jensen

Georgia Journal of Science

The Alabama Map Turtle, found only in Mobile Bay drainages, is state-listed in Georgia as “rare” and has been petitioned for federal listing as “threatened.” Because this species has been poorly studied in Georgia and in the Coosa River especially, a survey was undertaken to determine its status in the Coosa to help inform the federal listing decision. The 2014-2015 survey involved counting basking turtles from a motorboat with the aid of binoculars. The Alabama Map Turtle was the third most abundantly observed turtle species during the survey, preceded by only the Slider and River Cooter. All size/age classes were …

Novel Techniques In Chemical Ecology To Examine Life Histories In Fishes, Orian Tzadik

USF Tampa Graduate Theses and Dissertations

Diet and movements in fishes are often logistically challenging to study. Trace element and stable isotope analyses have advanced these fields considerably, but are still constrained by methodological impediments, such as the tendency towards lethal sampling. Studying endangered fishes is particularly challenging as representative samples are difficult to obtain. However, the information gained from such studies is often critical to the recovery of endangered fishes as knowledge of life history attributes has the potential to greatly influence the success of management strategies.

I tested the viability of using fin rays in fishes as a non-lethal approach to study diet and …

Scorpions Of Sri Lanka (Scorpiones: Buthidae, Chaerilidae, Scorpionidae) With Description Of Four New Species Of The Genera Charmus Karsch, 1879 And Reddyanus Vachon, 1972, Stat. N., František Kovařík, Graeme Lowe, Kithsiri B. Ranawana, David Hoferek, V. A. Sanjeewa Jayarathne, Jana Plíšková, František Šťáhlavský

Euscorpius

Data about all 18 known scorpion species of Sri Lanka are summarized. All previously known species were newly collected and four new species discovered during a scorpiological expedition in 2015. Information is provided about their taxonomy, distribution, ecology, and reproductive biology, fully complemented with color photos of live and preserved specimens, as well as their habitat. Subgenus Isometrus (Reddyanus) Vachon, 1972 is elevated to genus level, Reddyanus stat. n., supported by new characters of setation on leg tarsomere II and hemi-spermatophore morphology. Charmus saradieli sp. n., Reddyanus ceylonensis sp. n., R. jayarathnei …

Acropora Habitat Evaluation And Restoration Site Selection Using A Species Distribution Modeling Approach, Katherine Wirt Ames

USF Tampa Graduate Theses and Dissertations

While populations of nearly all stony coral species along the Florida reef tract have exhibited decline, the most notable decline has occurred in the once-dominant acroporid species (Acropora cervicornis, A. palmata). Both species were listed in 2006 as threatened under the Endangered Species Act. This listing, combined with their continued decline, has resulted in large-scale restoration efforts throughout Florida and the Western Caribbean. Currently, there is little to no information regarding spatial prioritization of sites for these restoration efforts. The primary objective of this dissertation was to utilize species distribution modeling, informed by existing data from the …