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A Block Operator Splitting Method For Heterogeneous Multiscale Poroelasticity, Paul M. Delgado

Open Access Theses & Dissertations

Traditional models of poroelastic deformation in porous media assume relatively homogeneous material properties such that macroscopic constitutive relations lead to accurate results. Many realistic applications involve heterogeneous material properties whose oscillatory nature require multiscale methods to balance accuracy and efficiency in computation.

The current study develops a multiscale method for poroelastic deformation based on a fixed point iteration based operator splitting method and a heterogeneous multiscale method using finite volume and direct stiffness methods. To characterize the convergence

of the operator splitting method, we use a numerical root finding algorithm to determine a threshold surface in a non-dimensional parameter space …

Managing Soil Microbial Communities With Organic Amendments To Promote Soil Aggregate Formation And Plant Health, Shawn T. Lucas

Theses and Dissertations--Plant and Soil Sciences

The effects of managing soil with organic amendments were examined with respect to soil microbial community dynamics, macroaggregate formation, and plant physio-genetic responses. The objective was to examine the possibility of managing soil microbial communities via soil management, such that the microbial community would provide agronomic benefits. In part one of this research, effects of three amendments (hairy vetch residue, manure, compost) on soil chemical and microbial properties were examined relative to formation of large macroaggregates in three different soils. Vetch and manure promoted fungal proliferation (measured via two biomarkers: fatty acid methyl ester 18:2ω6c and ergosterol) and also stimulated …

Transformations, Bioavailability And Toxicity Of Manufactured Zno Nanomaterials In Wastewter, Sewwandi Rathnayake

Theses and Dissertations--Plant and Soil Sciences

In order to properly evaluate the ecological and human health risks of ZnO Manufactured nanomaterials (MNMs) released to the environment, it is critical to understand the likely transformation products in the wastewater treatment process and in soils receiving biosolids. To address this critical knowledge gap, we examined the transformation reactions of 30 nm ZnO MNMs in single component and multi-component systems, with phosphate and natural organic matter (NOM). We also assessed the influence of nano ZnO transformation on the bioavailability, and toxicity of ZnO transformation products to Triticum aestivum. The data revealed that ZnO MNMs react with phosphate at …

Trace Metals In Sediments On The Continental Margin Of The Northwest Atlantic Ocean, Daniel L. Marsh

Browse all Theses and Dissertations

Trace metals in the ocean are derived from natural and anthropogenic sources. Despite increased human impact on the marine environment and biological productivity of continental margins, trace metal studies in marine sediments have focused primarily on near-shore regions. I investigated 22 metals in sediments on the continental margin of the northwest Atlantic Ocean to calculate enrichment factors (EF) relative to upper continental crust and identify spatial variations with distance from shore and depth below the sediment-seawater interface. Metals were well correlated with Al, Fe, organic matter, or CaCO3. No clear trends in metal EFs with distance from shore were evident …

Quantitative Analysis Of The Polarity Reversal Pattern Of The Earth's Magnetic Field And Self-Reversing Dynamo Models, Patrick Shane Craig

Browse all Theses and Dissertations

The geologic record documents that the Earth's magnetic field has reversed 284 times over the past 160 Myr. This study uses two methods to analyze the scaling properties of the pattern of geomagnetic reversals and to analyze the scaling properties of reversals output by two mathematical self-reversing dynamo models, the Rikitake (1958) two-disk dynamo and the magnetohydrodynamic (MHD) model of Driscoll and Olson (2011). The first analysis method plots the duration versus cumulative probability for geomagnetic polarity intervals ranging between 0.01 and 35 Myr. The Kolmogorov-Smirnov statistic is used to determine the optimal minimum value of xmin at which power …

Palaeoecological Analysis Of The Decline In Stromatolite Abundance During The Ordovician Period, Noran Mhm El-Sherif

Browse all Theses and Dissertations

A stromatolite is a laminated benthic microbial deposit. Its uniqueness arises from being present since the Precambrian to the present. Stromatolites recorded a peak time during the Mesoproterozoic, subsequently they witnessed abrupt rises and falls in abundance with the steepest decline in the Ordovician period, from which it never recovered from. There is no consensus yet regarding the reasons behind the decline of stromatolites. Thus the decline of these microbial deposits remains an enigma. Additionally, a literature gap exists regarding the reasons that specifically led to the Ordovician decline. Accordingly, the focus of this literature-based MSc. thesis is to find …

Abiotic Degradation Of Chlorinated Hydrocarbons (Chcs) With Zero-Valent Magnesium (Zvm) And Zero-Valent Palladium/Magnesium Bimetallic (Pd/Mg)-Reductant, Fang Yu

Browse all Theses and Dissertations

Chlorinated hydrocarbons (CHCs) in groundwater can be treated by monometallic and bimetallic metal reductants through abiotic degradation. The breakdown of CHC is achieved by gaining electrons from those reductants and removing chlorines from CHC molecules to transform the CHCs into less chlorinated compounds. As a proven technology in groundwater treatment, permeable reactive barriers (PRBs) have been used to passively treat contaminated groundwater, in which granular metals can be used as reactive materials. This study explored the abiotic degradation of CHCs by zero-valent magnesium (ZVM) and bimetallic palladium/magnesium (Pd/Mg) reductants. Different CHCs (carbon tetrachloride, chloroform, dichloromethane (DCM), 1,2-dichloroethane (1,2-DCA), 1,1,2-trichloroethane (1,1,2-TCA), …

Factors Influencing The Establishment And Survival Of Native Hardwood Tree Seedlings Of The Kentucky Inner Bluegrass Blue Ash-Oak Savanna-Woodland, James D. Shaffer

Theses and Dissertations--Biology

Historically, the Kentucky Inner Bluegrass blue ash-oak savanna-woodland was the primary ecosystem of the Inner Bluegrass Region (IBR) of Kentucky. After European settlement, the majority (>99%) of Bluegrass savanna was converted to agricultural and urban land uses. Currently remnant savanna tree species are failing to recruit. Therefore, a long-term restoration ecology project researching competition and disturbance on seedling establishment, survival, and growth has been established at Griffith Woods (the largest remaining savanna in Kentucky) in Harrison Co., KY. Fourteen native hardwood tree species (a total of 6,168 seedlings) have been experimentally planted. Light, soil, surrounding vegetation, and herbivory, factors …

Salinity And Climate Reconstructions From Continental Lakes, Sherilyn C. Fritz

Department of Earth and Atmospheric Sciences: Faculty Publications

Diatoms are widely used to reconstruct past environments because of their sensitivity to a range of environmental variables. Among the variables that exert a strong influence on diatoms are ionic concentration, expressed as salinity or conductivity, and ionic composition. Because the ionic concentration and composition of inland water bodies is affected by changes in effective moisture (precipitation minus evaporation, P – E), changes in the abundance of diatom species that vary in their salinity tolerances provide a tool for the reconstruction of past climate.

The Freshwater System West Of The Antarctic Peninsula: Spatial And Temporal Changes, Michael P. Meredith, Hugh J. Venables, Andrew Clarke, Hugh W. Ducklow, Matthew Erickson, Melanie J. Leng, Jan T. M. Lenaerts, Michiel R. Van Den Broeke

Department of Earth and Atmospheric Sciences: Faculty Publications

Climate change west of the Antarctic Peninsula is the most rapid of anywhere in the Southern Hemisphere, with associated changes in the rates and distributions of freshwater inputs to the ocean. Here, results from the first comprehensive survey of oxygen isotopes in seawater in this region are used to quantify spatial patterns of meteoric water (glacial discharge and precipitation) separately from sea ice melt. High levels of meteoric water are found close to the coast, due to orographic effects on precipitation and strong glacial discharge. Concentrations decrease offshore, driving significant southward geostrophic flows (up to ;30 cm s21). These produce …

The Floodplain Food Web Mosaic: A Study Of Its Importance To Salmon And Steelhead With Implications For Their Recovery, J. Ryan Bellmore, Colden V. Baxter, Kyle Martens, Patrick J. Connolly

United States Geological Survey: Staff Publications

Although numerous studies have attempted to place species of interest within the context of food webs, such efforts have generally occurred at small scales or disregard potentially important spatial heterogeneity. If food web approaches are to be employed to manage species, studies are needed that evaluate the multiple habitats and associated webs of interactions in which these species participate. Here, we quantify the food webs that sustain rearing salmon and steelhead within a floodplain landscape of the Methow River, Washington, USA, a location where restoration has been proposed to restore side channels in an attempt to recover anadromous fishes. We …

The Malthusian–Darwinian Dynamic And The Trajectory Of Civilization, Jeffrey C. Nekola, Craig D. Allen, James H. Brown, Joseph R. Burger, Ana D. Davidson, Trevor S. Fristoe, Marcus J. Hamilton, Sean T. Hammond, Astrid Kodric-Brown, Norman Mercado-Silva, Jordan G. Okie

United States Geological Survey: Staff Publications

Two interacting forces influence all populations: the Malthusian dynamic of exponential growth until resource limits are reached, and the Darwinian dynamic of innovation and adaptation to circumvent these limits through biological and/or cultural evolution. The specific manifestations of these forces in modern human society provide an important context for determining how humans can establish a sustainable relationship with the finite Earth.

Reproductive Health Of Yellow Perch Perca Flavescens In Selected Tributaries Of The Chesapeake Bay, Vicki S. Blazer, Alfred E. Pinkney, Jill A. Jenkins, Luke R. Iwanowicz, Steven Minkkinen, Rassa O. Draugelis-Dale, James H. Uphoff

United States Geological Survey: Staff Publications

Reduced recruitment of yellow perch has been noted for a number of years in certain urbanized watersheds (South and Severn Rivers) of the Chesapeake Bay. Other rapidly developing watersheds such as Mattawoman Creek are more recently showing evidence of reduced recruitment of anadromous fishes. In this study, we used a battery of biomarkers to better document the reproductive health of adult yellow perch collected during spring spawning in 2007–2009. Perch were collected in the South and Severn Rivers, Mattawoman Creek and the less developed Choptank and Allen's Fresh watersheds for comparison. Gonadosomatic indices, plasma reproductive hormone concentrations, plasma vitellogenin concentrations …

Performance Of Human Fecal Anaerobe-Associated Pcr-Based Assays In A Multi-Laboratory Method Evaluation Study, Blythe A. Layton, Yiping Cao, Darcy L. Ebentier, Kaitlyn Hanley, Elisenda Balleste, Joao Brandao, Muruleedhara Byappanahalli, Reagan Converse, Andreas H. Farnleitner, Jennifer Gentry-Shields, Maribeth L. Gidley, Michele Gourmelon, Chang Soo Lee, Jiyoung Lee, Solen Lozach, Tania Madi, Wim G. Meijer, Rachel Noble, Lindsay Peed, Georg H. Reischer, Raquel Rodrigues, Joan B. Rose, Alexander Schriewer, Chris Sinigalliano, Sangeetha Srinivasan, Jill Stewart, Laurie C. Van De Werfhorst, Dan Wang, Richard Whitman, Stefan Wuertz, Jenny Jay, Patricia A. Holden, Alexandria B. Boehm, Orin Shanks, John F. Griffith

United States Geological Survey: Staff Publications

A number of PCR-based methods for detecting human fecal material in environmental waters have been developed over the past decade, but these methods have rarely received independent comparative testing in large multi-laboratory studies. Here, we evaluated ten of these methods (BacH, BacHum-UCD, Bacteroides thetaiotaomicron (BtH), BsteriF1, gyrB, HF183 endpoint, HF183 SYBR, HF183 Taqman^®, HumM2, and Methanobrevibacter smithii nifH (Mnif)) using 64 blind samples prepared in one laboratory. The blind samples contained either one or two fecal sources from human, wastewater or non-human sources. The assay results were assessed for presence/absence of the human markers and also quantitatively while …

Human-Caused Mortality Influences Spatial Population Dynamics: Pumas In Landscapes With Varying Mortality Risks, Jesse R. Newby, L. Scott Mills, Toni K. Ruth, Daniel H. Pletscher, Michael S. Mitchell, Howard B. Quigley, Kerry M. Murphy, Rich Desimone

United States Geological Survey: Staff Publications

An understanding of how stressors affect dispersal attributes and the contribution of local populations to multi-population dynamics are of immediate value to basic and applied ecology. Puma (Puma concolor) populations are expected to be influenced by inter-population movements and susceptible to human induced source–sink dynamics. Using long-term datasets we quantified the contribution of two puma populations to operationally define them as sources or sinks. The puma population in the Northern Greater Yellowstone Ecosystem (NGYE) was largely insulated from human-induced mortality by Yellowstone National Park. Pumas in the western Montana Garnet Mountain system were exposed to greater human-induced mortality, …

A Causal Examination Of The Effects Of Confounding Factors On Multimetric Indices, Donald R. Schoolmaster Jr., James B. Grace, E. William Schweiger, Brian R. Mitchell, Glenn R. Guntenspergen

United States Geological Survey: Staff Publications

The development of multimetric indices (MMIs) as a means of providing integrative measures of ecosystem condition is becoming widespread. An increasingly recognized problem for the interpretability of MMIs is controlling for the potentially confounding influences of environmental covariates. Most common approaches to handling covariates are based on simple notions of statistical control, leaving the causal implications of covariates and their adjustment unstated. In this paper, we use graphical models to examine some of the potential impacts of environmental covariates on the observed signals between human disturbance and potential response metrics. Using simulations based on various causal networks, we show how …

An Algorithmic And Information-Theoretic Approach To Multimetric Index Construction, Donald R. Schoolmaster Jr., James B. Grace, E. William Schweiger, Glenn R. Guntenspergen, Brian R. Mitchell, Kathryn M. Miller, Amanda M. Little

United States Geological Survey: Staff Publications

The use of multimetric indices (MMIs), such as the widely used index of biological integrity (IBI), to measure, track, summarize and infer the overall impact of human disturbance on biological communities has been steadily growing in recent years. Initially, MMIs were developed for aquatic communities using preselected biological metrics as indicators of system integrity. As interest in these bioassessment tools has grown, so have the types of biological systems to which they are applied. For many ecosystem types the appropriate biological metrics to use as measures of biological integrity are not known a priori. As a result, a variety of …

A Review Of Environmental Impacts Of Salts From Produced Waters On Aquatic Resources, Aida M. Farag, David D. Harper

United States Geological Survey: Staff Publications

Salts are frequently amajor constituent ofwastewaters produced during oil and gas production. These produced waters or brines must be treated and/or disposed and provide a daily challenge for operators and resourcemanagers. Some elements of salts are regulated with water quality criteria established for the protection of aquatic wildlife, e.g. chloride (Cl⁻), which has an acute standard of 860 mg/L and a chronic standard of 230 mg/L. However, data for establishing such standards has only recently been studied for other components of produced water, such as bicarbonate (HCO3 ⁻), which has acute median lethal concentrations (LC50s) ranging from …

Origin Of The Sinai-Negev Erg, Egypt And Israel: Mineralogical And Geochemical Evidence For The Importance Of The Nile And Sea Level History, Daniel R. Muhs, Joel Roskin, Haim Tsoar, Gary Skipp, James Budahn, Amihai Sneh, Naomi Porat, Jean-Daniel Stanley, Itzhak Katra, Dan G. Blumberg

United States Geological Survey: Staff Publications

The Sinai-Negev erg occupies an area of 13,000 km² in the deserts of Egypt and Israel. Aeolian sand of this erg has been proposed to be derived from the Nile Delta, but empirical data supporting this view are lacking. An alternative source sediment is sand from the large Wadi El Arish drainage system in central and northern Sinai. Mineralogy of the Negev and Sinai dunes shows that they are high in quartz, with much smaller amounts of K-feldspar and plagioclase. Both Nile Delta sands and Sinai wadi sands, upstream of the dunes, also have high amounts of quartz relative …

Comparative Embryotoxicity Of A Pentabrominated Diphenyl Ether Mixture To Common Terns (Sterna Hirundo) And American Kestrels (Falco Sparverius), Barnett A. Rattner, Rebecca S. Lazarus, Gary H. Heinz, Natalie K. Karouna-Renier, Sandra L. Schultz, Robert C. Hale

United States Geological Survey: Staff Publications

Concentrations of polybrominated diphenyl ethers (PBDEs) in Forster’s tern (Sterna forsteri) eggs from San Francisco Bay have been reported to range up to 63 µg g^-1 lipid weight. This value exceeds the lowest-observed-adverse-effect level (1.8 µg g^-1 egg wet weight; ~32 µg g^-1 lipid weight) reported in an embryotoxicity study with American kestrels (Falco sparverius). As a surrogate for Forster’s terns, common tern (Sterna hirundo) eggs were treated by air cell injection with corn oil vehicle (control) or a commercial penta-BDE formulation (DE-71) at nominal concentrations of 0.2, 2, and 20 µg g …

A Global Standard For Monitoring Coastal Wetland Vulnerability To Accelerated Sea-Level Rise, Edward L. Webb, Daniel A. Friess, Ken W. Krauss, Donald R. Cahoon, Glenn R. Guntenspergen, Jacob Phelps

United States Geological Survey: Staff Publications

Sea-level rise threatens coastal salt-marshes and mangrove forests around the world, and a key determinant of coastal wetland vulnerability is whether its surface elevation can keep pace with rising sea level. Globally, a large data gap exists because wetland surface and shallow subsurface processes remain unaccounted for by traditional vulnerability assessments using tide gauges. Moreover, those processes vary substantially across wetlands, so modelling platforms require relevant local data. The low-cost, simple, high-precision rod surface-elevation table–marker horizon (RSET-MH) method fills this critical data gap, can be paired with spatial data sets and modelling and is financially and technically accessible to every …

Spatially Explicit Models For Inference About Density In Unmarked Or Partially Marked Populations, Richard B. Chandler, J. Andrew Royle

United States Geological Survey: Staff Publications

Recently developed spatial capture-recapture (SCR) models represent a major advance over traditional capture-recapture (CR) models because they yield explicit estimates of animal density instead of population size within an unknown area. Furthermore, unlike non-spatial CR methods, SCR models account for heterogeneity in capture probability arising from the juxtaposition of animal activity centers and sample locations. Although the utility of SCR methods is gaining recognition, the requirement that all individuals can be uniquely identified excludes their use in many contexts. In this paper, we develop models for situations in which individual recognition is not possible, thereby allowing SCR concepts to be …

The Geologic Records Of Dust In The Quaternary, Daniel R. Muhs

United States Geological Survey: Staff Publications

Study of geologic records of dust composition, sources and deposition rates is important for understanding the role of dust in the overall planetary radiation balance, fertilization of organisms in the world’s oceans, nutrient additions to the terrestrial biosphere and soils, and for paleoclimatic reconstructions. Both glacial and non-glacial processes produce fine-grained particles that can be transported by the wind. Geologic records of dust flux occur in a number of depositional archives for sediments: (1) loess deposits; (2) lake sediments; (3) soils; (4) deep-ocean basins; and (5) ice sheets and smaller glaciers. These archives have several characteristics that make them highly …

Abiotic Nitrate And Nitrite Reactivity With Iron Oxide Minerals, Prakash Dhakal

Theses and Dissertations--Plant and Soil Sciences

Under iron (Fe³⁺)-reducing conditions where aqueous Fe²⁺ and unreduced solid Fe³⁺-oxides commonly coexist, soil Fe²⁺ oxidation has been shown to be coupled with nitrate (NO₃^-) reduction. One possible secondary reaction is the involvement of NO₃^- and nitrite (NO₂^-) with Fe-oxide minerals found in many natural environments. Yet, spectroscopic measurements and kinetic data on reactivity of NO₃^- and NO₂^- with Fe-containing oxide minerals such as goethite (a-FeOOH), and magnetite (Fe₃O­₄) are not found in the literature. The reactivity of …

Putting Local Knowledge And Context To Work For Gunnison Sage-Grouse Conservation, Corrine Noel Knapp, James Cochran, F. Stuart Chapin Iii, Gary Kofinas, Nathan Sayre

Human–Wildlife Interactions

Successful conservation requires adequate understanding of focal species and ecology, practices that may assist species survival, and a community of people willing and able to conserve the species. For many species at risk, we operate with imperfect knowledge in complex conservation contexts. In this case study involving the Gunnison sage-grouse (Centrocercus minimus), we interviewed 26 community-defined local experts, including both those with and without related academic degrees, to assess the utility of local knowledge for understanding and informing conservation opportunities.This project suggests several benefits of integrating local knowledge that apply specifically to rare and endemic populations, including the …

Occurrence And Success Of Greater Sage-Grouse Broods In Relation To Insect-Vegetation Community Gradients, Seth M. Harju, Chad V. Olson, Lisa Foy-Martin, Stephen L. Webb, Matthew R. Dzialak, Jeffrey B. Winstead, Larry D. Hayden-Wing

Human–Wildlife Interactions

A community-level approach to identify important brood habitats of greater sage-grouse (Centrocercus urophasianus) may prove useful in guiding management actions because it acknowledges that important habitat components are not ecologically independent from each other. We used principal components analysis to combine insect and vegetation variables into community gradients and used logistic regression to link these components with brood survival and occurrence. We found that brood success was higher when broods occurred in specific insect-vegetation community types. A relationship between brood occurrence and insect-vegetation gradients was not apparent. The high resolution of the data and the solid validation performance …

Winter Habitat Use By Juvenile Greater Sage-Grouse On Parker Mountain, Utah: Implications For Sagebrush Management, Danny Caudill, Terry A. Messmer, Brent Bibles, Michael R. Guttery

Human–Wildlife Interactions

Greater sage-grouse (Centrocercus urophasianus; hereafter, sage-grouse) are entirely dependent on sagebrush (Artemisia spp.) for food and cover during winter. Loss or fragmentation of important wintering areas could have a disproportionate affect on population size. We radio-marked and monitored 91 juvenile sage-grouse in south-central Utah from 2008 to 2010. Thirty-four individuals survived to winter (January to March) and were used to evaluate winter habitat use. Resource use was calculated using kernel density estimation of radio-marked individuals and compared to available habitat using a G-test. We found that juvenile sage-grouse used winter habitats characterized by 0 to 5% slopes …

Response Of A Small Population Of Greater Sage-Grouse To Tree Removal: Implications Of Limiting Factors, S. Nicole Frey, Rachel Curtis, Kevin Heaton

Human–Wildlife Interactions

In Utah, greater sage-grouse (Centrocercus urophasianus; hereafter, sage-grouse) range has been reduced to 50% of what is considered historical availability due to habitat degradation and loss. In an effort to improve sage-grouse habitat in southern Utah, the U.S. Bureau of Land Management (BLM) conducted a tree-removal treatment in 2005. We conducted a study to determine if (a) the tree-removal treatment was effective at creating new sage-grouse habitat, and (b) if characteristics of used habitat were similar to those reported in previous literature. The treatment resulted in increased abundance of grasses and forbs. Additionally, shrub percentage cover and height …

Stakeholder Contemporary Knowledge Needs Regarding The Potential Effects Of Tall Structures On Sage-Grouse, Terry A. Messmer, Robert Hasenyager, James Burruss, Sherry Liguori

Human–Wildlife Interactions

The U.S. Energy Policy Act of 2005 required all state and federal agencies to grant utilities access permits to promote reliable, renewable energy production and transmission. Contemporary transmission relies largely on above-ground electric transmission structures and lines. The construction, operation, and maintenance of tall structures, such as power lines, communication towers, wind turbines, and other installations and their associated activities in sage-grouse (Centrocercus spp.) habitats were identified as a conservation threat by the U.S. Fish and Wildlife Service in its decision to designate greater sage-grouse (C. urophasianus; hereafter, sage-grouse) as a candidate species for protection under the Endangered …

Factors Influencing Survival And Productivity Of Pronghorn In A Semiarid Grass-Woodland In East-Central New Mexico, Louis C. Bender, Jon C. Boren, Heather Halbritter, Shad Cox

Human–Wildlife Interactions

Pronghorns (Antilocapra americana) are an important source of revenue and recreation for property managers throughout New Mexico, but have been declining in number. We documented body condition, survival, production of fawns, and trends in population size of pronghorns on the Corona Range and Livestock Research Center (CRLRC), a working research ranch and wildlife enterprise located in east-central New Mexico, from 2006 through 2011. Accrual of all indices of condition and size of both adult female and adult male pronghorns was positively associated with precipitation during June to July, August to September, and annually. Annual survival rates of females …