Digital Commons Network^™

Tf1.3 Permanent Marshes, R. T. Kingsford, J. A. Catford, Mark C. Rains, B. J. Robson, D. A. Keith

School of Geosciences Faculty and Staff Publications

No abstract provided.

Uncovering Host-Microbiome Interactions In Global Systems With Collaborative Programming: A Novel Approach Integrating Social And Data Sciences [Version 1; Peer Review: Awaiting Peer Review], Jenna Oberstaller, Swamy Rakesh Adapa, Guy Dayhoff Ii, Justin Gibbons, Gregory S. Herbert

School of Geosciences Faculty and Staff Publications

Microbiome data are undergoing exponential growth powered by rapid technological advancement. As the scope and depth of microbiome research increases, cross-disciplinary research is urgently needed for interpreting and harnessing the unprecedented data output. However, conventional research settings pose challenges to much-needed interdisciplinary research efforts due to barriers in scientific terminologies, methodology and research-culture. To breach these barriers, our University of South Florida OneHealth Codeathon was designed to be an interactive, hands-on event that solves real-world data problems. The format brought together students, postdocs, faculty, researchers, and clinicians in a uniquely cross-disciplinary, team-focused setting. Teams were formed to encourage equitable distribution …

Correlating The Plant Height Of Wheat With Above-Ground Biomass And Crop Yield Using Drone Imagery And Crop Surface Model, A Case Study From Nepal, U. S. Panday, Nawaraj Shrestha, S. Maharjan, A. K. Pratihast, Shahnawaz, K. L. Shrestha, J. Aryal

Conservation and Survey Division: Faculty and Staff Publications

No abstract provided.

Analysis Of Clastic Cave Sediment In A Fluviokarst System, Russell Cave, Northeast Alabama, Jonathan Camelo

Master's Theses or Doctor of Nursing Practice

Russell Cave is part of a fluviokarst system located along the edge of the Cumberland Plateau in northeast Alabama. The cave system acts as a surface-subsurface drainage system transporting, depositing, and accumulating large influxes of terrestrial-derived materials (sediments, organic material, and magnetic minerals) into the subsurface system forming sediment traps. Five core sites along various discontinuous sediment banks were collected and sampled in 2 cm intervals. Data collection involved Red-Green-Blue (RGB) color, loss on ignition (LOI), magnetic susceptibility (MS) grain-size analysis, end member mixing analysis (EMMA), and ¹⁴C radiocarbon dating. The goals for this research were to identify the …

An Assessment Of Convergence In The Feeding Morphology Of Xiphactinus Audax And Megalops Atlanticus Using Landmark-Based Geometric Morphometrics, Edward Chase Shelburne

Master's Theses or Doctor of Nursing Practice

Convergence is an evolutionary phenomenon wherein distantly related organisms independently develop features or functional adaptations to overcome similar environmental constraints. Historically, convergence among organisms has been speculated or asserted with little rigorous or quantitative investigation. More recent advancements in systematics has allowed for the detection and study of convergence in a phylogenetic context, but this does little to elucidate convergent anatomical features in extinct taxa with poorly understood evolutionary histories. The purpose of this study is to investigate one potentially convergent system—the feeding structure of Xiphactinus audax (Teleostei: Ichthyodectiformes) and Megalops atlanticus (Teleostei: Elopiformes)—using a comparative anatomical approach to assess …

Household Water Security: An Analysis Of Water Affect In The Context Of Hydraulic Fracturing In West Virginia, Appalachia, Bethani Turley, Martina Angela Caretta

Faculty & Staff Scholarship

Hydraulic fracturing has been booming in the last decade in the United States. While natural gas extraction and production has improved the national energy security, it has raised questions around the water security of those communities where extraction is taking place. Both scientists and residents are concerned about hydraulic fracturing’s impacts on surface- and groundwater, especially regarding how hydraulic fracturing impacts residents’ access to safe household well water. In the past decade, the Marcellus Shale has been developed in Northwestern West Virginia, yet the human geography dimensions of oil and gas extraction in West Virginia remain to be investigated. This …

A Karst Feature Predictability Model Within Barber County, Kansas, Gary M. Kelner

Master's Theses or Doctor of Nursing Practice

This research consisted of two topics: 1) geographic predictive models of karst features and 2), a petrographic study examining the lithology of the study area. The study area is a privately owned ranch in the Gypsum Hills of Barber County, Kansas and is known to have karst features. Two predictive models for karst features were utilized. Previously identified features, Light Detection and Ranging (LiDAR), and Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) imagery aided in the creation of these predictive models. These predictability models also used the ESRI ArcMap software platform. The data for these models consists of slope, …

Assessing The Accuracy Of A Uav Snow Depth Survey: Utqiagvik (Barrow), Alaska Calm Grid, Ian Nichols

Dissertations, Master's Theses and Master's Reports

Active layer depth and snow depth are annually collected across the Circumpolar Active Layer Monitoring (CALM) Network to observe the response of the active layer and near-surface permafrost to climate change over decadal-time scales. Snow depth is typically measured using a graduated steel probe at each grid node but, in this paper, we explore the viability of using Unmanned Aerial Vehicle (UAV) (drone) technology to collect snow depth measurements at the 1 km² Utqiagvik (Barrow), Alaska CALM grid. This is achieved by comparing estimated UAV snow depths to measured snow depths collected using a MagnaProbe (MP) at each of …

Quantifying Water Recharge And Water Use In Hand Dug Wells: A Case Study Of Thiawor, Senegal, West Africa, Celine Carus

Dissertations, Master's Theses and Master's Reports

For many rural communities in Senegal, water is an essential life-giving need received only through a network of hand dug wells. Increasing rainfall variability in the Sahel has driven greater water insecurity for those communities that rely on rain-irrigated systems for agriculture. This study investigates the retrieval, purposes, and quantities of seasonal water usage on a small domestic scale, as well as an analysis of perceived water availability in the wells during the rainy season. Additionally, using a combination of interview data and pumping test data obtained from the village wells, water usage and estimated daily needs are calculated and …

Ecosystem Health In Guánica Bay And La Parguera, Puerto Rico: Remote Sensing Of Ocean Color And Metal Analysis Of Coral Tissue And Surficial Sediments, Jahnelle Howe

Dissertations and Theses

Guánica Bay is an estuary located in southwest Puerto Rico, with a coral reef ecosystem at its periphery. This ecosystem is affected by sediments, nutrients, and contaminants from the watershed through the Bay and into the offshore water. This project evaluates Guánica Bay and La Parguera coastal areas through remote sensing and chemical analysis to assess coastal ecosystem health. The concentration of metals in two coral species and their associated surface sediments was were analyzed by X-ray fluorescence (XRF) and Direct Mercury Analyzer (DMA- 80). Ocean color remote sensing was used to estimate nutrient inputs and phytoplankton biomass through chlorophyll- …

Sampling The Local Fare: Fishes At The Sam Israel House Pit (45gr76), Soap Lake, Washington, Adam Fruge

All Master's Theses

The Sam Israel site is a precontact archaeological complex with numerous fish bones at the north end of Soap Lake, Washington. Excavated in 1976, the fish remains recovered from there were never fully analyzed prior to this research. Since this inland Columbia Plateau site had thousands of fish bones, it contained untapped potential for our understanding of ancient local fish procurement. As such, I conducted a detailed analysis of 2,862 fish bone specimens from the Sam Israel House Pit locus to: study a larger sample of fish bones in greater detail than was done before; compare the distribution of fishes …

Modeling Cle Elum Reservoir Shoreline Erosion: Gis Analysis To Support Cultural And Environmental Resource Management, Yakima Basin, Washington, Michael H. Horner

All Master's Theses

In the Yakima Basin, managers are expanding reservoirs including Cle Elum Lake to increase the availability of water. The objective of this study was to examine areas prone to further shoreline erosion to inform resource management. This research included the use of airphotos and fieldwork to identify erosional shorelines. Erosion was verified in the field using a video survey as well as indicators such as shoreline slope, sediment size, and nearshore width. Near-term erosional segments were identified by more rapidly receding bluffs while long-term erosional segments included both bedrock cliffs and bluffs. Although most of the shoreline is depositional, near-term …

Distribution Of Invasive Plant Species On Debris Cones At Mount Rainier National Park, Shaun Morrison

All Master's Theses

Invasive plant populations within Mount Rainier National Park are a biological and ecological threat to the unique mountain landscape. A better understanding of their distribution and transport within the landscape is needed to improve invasive species monitoring for National Park Service management. This study investigates how invasive plant populations in Stevens Canyon are utilizing the debris cone disturbances and associated geomorphic processes to facilitate movement within the park. Vegetation transects were performed along Stevens Canyon Road (to observe the roadside community composition) and on the debris cone features (to observe species movement from the roadside). These vegetation observations are presented …

Sedimentological, Architectural, And Paleoenvironmental Analysis Of The Fluvial Upper Devonian Catskill Formation, North-Central Pennsylvania, Usa, Matylda Zaklicki

Honors Theses

During the Late Devonian time period, sediments eroded from the Acadian mountains were transported westward and deposited in fluvial environments, but the morphology of the rivers, avulsion style, and controls on basin infilling remain unclear. This study assesses the sedimentology, channel geometry, stratigraphic architecture, and avulsion style of the paleochannels and floodplains of the uppermost 80 meters of the Catskill Formation near Blossburg, Pennsylvania, using field-based lithofacies observations, high-resolution panoramic photographs, and terrestrial lidar scanning.

Upper Catskill Formation strata at Blossburg Middle consist of sandy channel and muddy floodplain deposits. Floodplain deposits were categorized into either proximal floodplain deposits or …

Crystalline Architecture And Stratigraphy Of Coral Skeletal Density Banding: A Geobiological Record Of Changing Coral Reef Ecology, Kyle Fouke

Honors Theses

Coral skeletal density banding (CSDB), composed of alternating high density band (HDB) and low density band (LDB) layers that comprise the CaCO₃ (aragonite) skeleton of scleractinian corals, are used as chronometers for global paleoclimatic reconstructions of sea surface temperature (SST). Scleractinian coral skeletons have been intensively studied for centuries with detail analysis of the macro- and microscale skeletal structure to establish taxonomic and evolutionary relationships of coral species, mechanisms of biomineralization, and seafloor physical, chemical and biological alteration (diagenesis) of the skeleton. This study is the first to determine the crystalline architecture of HDBs and CSDB stratigraphic …

Evaluation Of The Relationship Between Land Use And Water Quality In Kittitas County, Wa, Lindsay Schulz

All Master's Theses

Water in Kittitas County is extremely valuable since it supports farming, recreation, and cultural activities, as well as environmental processes and a diversity of biological life while providing many ecosystem services. However, land conversions required by agricultural and urban land uses can negatively impact water quality and the biological function of the stream. I studied how forested, agricultural, and urban land use affect six streams. Fourteen sites were sampled, once each in July, August, and September 2019. Land use was calculated as a percentage of forested, agricultural, and urban land use within a 100-m buffer of the stream, upstream of …

Glaciernet: A Deep-Learning Approach For Debris-Covered Glacier Mapping, Zhiyuan Xie, Umesh K. Haritashya, Vijayan K. Asari, Brennan W. Young, Michael P. Bishop, Jeffrey S. Kargel

Electrical and Computer Engineering Faculty Publications

Rising global temperatures over the past decades is directly affecting glacier dynamics. To understand glacier fluctuations and document regional glacier-state trends, glacier-boundary detection is necessary. Debris-covered glacier (DCG) mapping, however, is notoriously difficult using conventional geospatial technology methods. Therefore, in this research for automated DCG mapping, we evaluate the utility of a convolutional neural network (CNN), which is a deep learning feed-forward neural network. The CNN inputs include Landsat satellite images, an Advanced Land Observation Satellite (ALOS) digital elevation model (DEM) and DEM-derived land-surface parameters. Our CNN based deep-learning approach named GlacierNet was designed by appropriately choosing the type, number …

Internet Of Things For Sustainable Forestry, Abdul Salam

Faculty Publications

Forests and grasslands play an important role in water and air purification, prevention of the soil erosion, and in provision of habitat to wildlife. Internet of Things has a tremendous potential to play a vital role in the forest ecosystem management and stability. The conservation of species and habitats, timber production, prevention of forest soil degradation, forest fire prediction, mitigation, and control can be attained through forest management using Internet of Things. The use and adoption of IoT in forest ecosystem management is challenging due to many factors. Vast geographical areas and limited resources in terms of budget and equipment …

Modeling Hydrologic Impacts Of Tribal Water Rights Quantification And Settlement On The Flathead Indian Irrigation Project, Jordan Andrew Jimmie

Graduate Student Theses, Dissertations, & Professional Papers

The Confederated Salish and Kootenai Tribes (CSKT) of the Flathead Reservation are a federally-recognized group of tribes (Kootenai, Salish, and Pend d’Oreille) located in western Montana. On the reservation lies the expansive Flathead Indian Irrigation Project (FIIP), which supplies irrigation water to approximately 127,000 acres of tribal and non-tribal agricultural land. The 1904 Flathead Allotment Act opened “surplus” land to non-native homesteaders without tribal consent, initiating the land ownership fragmentation observed on the reservation today. This legacy, combined with historically unquantified tribal reserved water rights and the antiquated state of the FIIP infrastructure, including water losses from unlined earthen canals, …

A Spatially Distributed Investigation Of Stream Water Temperature In A Contemporary Mixed-Land-Use Watershed, Jason P. Horne

Graduate Theses, Dissertations, and Problem Reports (ETD)

Stream water temperature is an important physical variable that influences many biological and abiotic water quality processes. The land-use/land-cover (LULC) types and corresponding variability in stream water temperature (Tw) processes in contemporary mixed-land-use watersheds necessitate research to advance management and policy decisions. Water temperature was analyzed from 21 gauging sites using a nested-scale experimental watershed study design. Results showed that forested land use was significantly negatively correlated (α = 0.05) with mean and maximum Tw. Agricultural land use was significantly positively correlated (α = 0.05) with maximum Tw except during the spring season. Mixed development and Tw were significantly correlated …

Assessing The Hierarchy Of Long-Term Environmental Controls On Diatom Communities Of Yellowstone National Park Using Lacustrine Sediment Records, Victoria Chraibi, Sherilyn C. Fritz

Department of Earth and Atmospheric Sciences: Faculty Publications

An ecosystem’s ability to maintain structure and function following disturbance, defined as resilience, is influenced by a hierarchy of environmental controls, including climate, surface cover, and ecological relationships that shape biological community composition and productivity. This study examined lacustrine sediment records of naturally fishless lakes in Yellowstone National Park to reconstruct the response of aquatic communities to climate and trophic cascades from fish stocking. Sediment records of diatom algae did not exhibit a distinct response to fish stocking in terms of assemblage or algal productivity. Instead, 3 of 4 lakes underwent a shift to dominance by benthic diatom species from …

The Influence Of Isolated Thunderstorms And The Low-Level Wind Field On Nocturnally Migrating Birds In Central North America, Matthew S. Van Den Broeke, Timothy J. Gunkel

Department of Earth and Atmospheric Sciences: Faculty Publications

Seasonal bird migration occurs on large spatial scales and is influenced by many factors including weather conditions. Weather can include thunderstorms, which may force migrants to land or cause them to reroute a migration path. In this study, a sample of isolated thunderstorms was analyzed from the domains of three weather radars in the central United States to test hypotheses regarding the influence of thunderstorms on the distribution of migrants. Migrating bird density was often reduced in the wake of storms, and this wake reduction was typically more pronounced for larger, more intense and faster- moving storms, particularly in eastern …

The Influence Of Isolated Thunderstorms And The Low-Level Wind Field On Nocturnally Migrating Birds In Central North America, Matthew V.D. Broeke, Timothy J. Gunkel

Department of Earth and Atmospheric Sciences: Faculty Publications

Seasonal bird migration occurs on large spatial scales and is influenced by many factors including weather conditions. Weather can include thunderstorms, which may force migrants to land or cause them to reroute a migration path. In this study, a sample of isolated thunderstorms was analyzed from the domains of three weather radars in the central United States to test hypotheses regarding the influence of thunderstorms on the distribution of migrants. Migrating bird density was often reduced in the wake of storms, and this wake reduction was typically more pronounced for larger, more intense and faster- moving storms, particularly in eastern …

End-Permian (252 Mya) Deforestation, Wildfires And Flooding—An Ancient Biotic Crisis With Lessons For The Present, Vivi Vajda, Stephen Mcloughlin, Chris Mays, Tracy D. Frank, Christopher R. Fielding, Allen Tevyaw, Veiko Lehsten, Malcolm Bocking, Robert S. Nicoll

Department of Earth and Atmospheric Sciences: Faculty Publications

Current large-scale deforestation poses a threat to ecosystems globally, and imposes substantial and prolonged changes on the hydrological and carbon cycles. The tropical forests of the Amazon and Indonesia are currently undergoing deforestation with catastrophic ecological consequences but widespread deforestation events have occurred several times in Earth’s history and these provide lessons for the future. The end-Permian mass-extinction event (EPE; ∼252 Ma) provides a global, deep-time analogue for modern deforestation and diversity loss. We undertook centimeter-resolution palynological, sedimentological, carbon stable-isotope and paleobotanical investigations of strata spanning the end- Permian event at the Frazer Beach and Snapper Point localities, in the …

Acoustic Space Occupancy: Combining Ecoacoustics And Lidar To Model Biodiversity Variation And Detection Bias Across Heterogeneous Landscapes, Danielle I. Rappaport, J. Andrew Royle, Douglas C. Morton

United States Geological Survey: Staff Publications

There is global interest in quantifying changing biodiversity in human-modified landscapes. Ecoacoustics may offer a promising pathway for supporting multi-taxa monitoring, but its scalability has been hampered by the sonic complexity of biodiverse ecosystems and the imperfect detectability of animal-generated sounds. The acoustic signature of a habitat, or soundscape, contains information about multiple taxa and may circumvent species identification, but robust statistical technology for characterizing community-level attributes is lacking. Here, we present the Acoustic Space Occupancy Model, a flexible hierarchical framework designed to account for detection artifacts from acoustic surveys in order to model biologically relevant variation in acoustic space …

Human-Associated Species Dominate Passerine Communities Across The United States, Helen R. Sofaer, Curtis H. Flather, Catherine S. Jarnevich, Kristin P. Davis, Liba Pejchar

United States Geological Survey: Staff Publications

Aim: Human development and agriculture can have transformative and homogenizing effects on natural systems, shifting the composition of ecological communities towards non-native and native species that tolerate or thrive under human-dominated conditions. These impacts cannot be fully captured by summarizing species presence, as they include dramatic changes to patterns of species abundance. However, how human land use patterns and species invasions intersect to shape patterns of abundance and dominance within ecological communities is poorly understood even in well-known taxa.

Location: Conterminous United States.

Time period: 2010–2012.

Major taxa studied: Passeriformes.

Methods: We analyse continental-scale monitoring data to study the proportional …

Ecosystem Processes, Land Cover, Climate, And Human Settlement Shape Dynamic Distributions For Golden Eagle Across The Western Us, J.D. Tack, Barry R. Noon, Zachary Bowen, Brad C. Fedy

United States Geological Survey: Staff Publications

Species–environment relationships for highly mobile species outside of the breeding season are often highly dynamic in response to the collective effects of everchanging climatic conditions, food resources, and anthropogenic disturbance. Capturing dynamic space-use patterns in a model-based framework is critical as model inference often drives place-based conservation planning. We applied dynamic occupancy models to broad-scale golden eagle Aquila chrysaetos survey data collected annually from 2006 to 2012 during the late summer post-fledging period in the western US. We defined survey sites as 10 km transect segments with a 1 km buffer on either transect side (n = 3540). Derived estimates …

Human-Associated Species Dominate Passerine Communities Across The United States, Helen R. Sofaer, Curtis H. Flather, Catherine S. Jarnevich, Kristin P. Davis

United States Geological Survey: Staff Publications

Aim: Human development and agriculture can have transformative and homogenizing effects on natural systems, shifting the composition of ecological communities towards non-native and native species that tolerate or thrive under human-dominated conditions. These impacts cannot be fully captured by summarizing species presence, as they include dramatic changes to patterns of species abundance. However, how human land use patterns and species invasions intersect to shape patterns of abundance and dominance within ecological communities is poorly understood even in well-known taxa.

Location: Conterminous United States.

Time period: 2010–2012.

Major taxa studied: Passeriformes.

Methods: We analyse continental-scale monitoring data to study the proportional …

Acoustic Space Occupancy: Combining Ecoacoustics And Lidar To Model Biodiversity Variation And Detection Bias Across Heterogeneous Landscapes, Danielle I. Rappaport, J. Andrew Royle, Douglas C. Morton

United States Geological Survey: Staff Publications

There is global interest in quantifying changing biodiversity in human-modified landscapes. Ecoacoustics may offer a promising pathway for supporting multi-taxa monitoring, but its scalability has been hampered by the sonic complexity of biodiverse ecosystems and the imperfect detectability of animal-generated sounds. The acoustic signature of a habitat, or soundscape, contains information about multiple taxa and may circumvent species identification, but robust statistical technology for characterizing community-level attributes is lacking. Here, we present the Acoustic Space Occupancy Model, a flexible hierarchical framework designed to account for detection artifacts from acoustic surveys in order to model biologically relevant variation in acoustic space …

Characterization Of Pallid Sturgeon (Scaphirhynchus Albus) Spawning Habitat In The Lower Missouri River, Caroline M. Elliott, Aaron J. Delonay, Kimberly Chojnacki, Robert B. Jacobson

United States Geological Survey: Staff Publications

Acipenseriformes (sturgeons and paddlefish) globally have declined throughout their range due to river fragmentation, habitat loss, overfishing, and degradation of water quality. In North America, pallid sturgeon (Scaphirhynchus albus) populations have experienced poor to no recruitment, or substantial levels of hybridization with the closely related shovelnose sturgeon (S. platorynchus). The Lower Missouri River is the only portion of the species’ range where successful reproduction and recruitment of genetically pure pallid sturgeon have been documented. This paper documents spawning habitat and behavior on the Lower Missouri River, which comprises over 1,300 km of unfragmented river habitat. The …