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Computational Insights Into Nucleosome Dynamics In Epigenetics Using Molecular Dynamics Simulations, Rutika Patel Jun 2026

Computational Insights Into Nucleosome Dynamics In Epigenetics Using Molecular Dynamics Simulations, Rutika Patel

Dissertations, Theses, and Capstone Projects

Nucleosome core particles (NCP) are the building blocks that form a highly organized and compact chromatin structure. Nucleosomes package DNA in the nucleus of eukaryotic cells. The NCP consists of about 147 base pairs of DNA wrapped around the histone octamer, with 1.65 superhelical turns in a left-handed manner. The histone octamer is composed of two copies of H3, H4, H2A, and H2B. Together with histone H1 and linker DNA, they further assemble into a higher-order chromatin structure. The nucleosome complex is stabilized by electrostatic interactions between positively charged histone residues and the negatively charged DNA backbone. To effectively access …


Optimizing Fpga And Wafer Test Coverage With Spatial Sampling And Machine Learning: Analysis Of Local Spatial Consistency, Weiquan Wang, K. M.Shahriar Alam Adib, Foisal Ahmed, Riaz Ul Haque Mian Jun 2026

Optimizing Fpga And Wafer Test Coverage With Spatial Sampling And Machine Learning: Analysis Of Local Spatial Consistency, Weiquan Wang, K. M.Shahriar Alam Adib, Foisal Ahmed, Riaz Ul Haque Mian

Research outputs 2022 to 2026

Wafer and FPGA testing remains costly in semiconductor manufacturing. This paper studies random sampling, stratified sampling, and k-means sampling under a partial-measurement setting with Gaussian Process Regression (GPR), and introduces Short Distance Elimination (SDE), a spatial screening rule that spreads selected training points over the layout. Combining value-based sampling with SDE yields two hybrid methods: S-SDE, which applies SDE within stratified subsets, and K-SDE, which applies SDE within k-means clusters. A calibration-based protocol fixes the value-group labels and SDE thresholds before target-file prediction. The SDE thresholds are selected from (Formula presented.) configurations in (Formula presented.), excluding (Formula presented.), using local …


To Wait Or To Transfer? A Three-Level Optimization Framework For Intermodal Transfer Coordination In First Train Timetabling And Bus Bridging Services Management, Hao Li, Liujiang Kang, Norman Weik, Huijun Sun, Qingying Lai, Zhiguang Cao Jun 2026

To Wait Or To Transfer? A Three-Level Optimization Framework For Intermodal Transfer Coordination In First Train Timetabling And Bus Bridging Services Management, Hao Li, Liujiang Kang, Norman Weik, Huijun Sun, Qingying Lai, Zhiguang Cao

Research Collection School Of Computing and Information Systems

This study addresses the integrated optimization of the first train timetabling and bus bridging service design (FTT-BBSD) for morning transfer challenges, two critical but interdependent passenger services in the public transit system. In contrast to most existing studies and conventional approaches, this study explicitly models the influence of passenger path choices and transfer mode selections on FTT-BBSD. Through a novel dual-level network representation that integrates subway and bus systems, we formulate the FTT-BBSD problem as a mixed-integer nonlinear programming model. The model simultaneously determines subway and bus timetables and bridging line deployment to minimize total travel time for all first …


Extensive And Intensive Margin Labor Supply On Ride-Sourcing Platforms, Hao Sun, Hai Wang, Zhixi Wan Jun 2026

Extensive And Intensive Margin Labor Supply On Ride-Sourcing Platforms, Hao Sun, Hai Wang, Zhixi Wan

Research Collection School Of Computing and Information Systems

The rapid expansion of ride-sourcing platforms has enabled freelance drivers to flexibly determine both their participation and working hours. Understanding this flexible labor supply behavior is essential for managing platform capacity and evaluating the impacts of pricing and incentive policies on driver welfare. This study develops a labor supply model in which drivers optimally choose whether to participate (extensive margin) and how long to work (intensive margin) to maximize their utility from consumption and leisure. The model incorporates heterogeneity in drivers’ other income, idle time, and participation costs, allowing us to analytically characterize equilibrium labor supply decisions. The results show …


Rode: Linear Rectified Mixture Of Diverse Experts For Food Large Multi-Modal Models, Pengkun Jiao, Xinlan Wu, Bin Zhu, Jingjing Chen, Chong-Wah Ngo, Yu-Gang Jun 2026

Rode: Linear Rectified Mixture Of Diverse Experts For Food Large Multi-Modal Models, Pengkun Jiao, Xinlan Wu, Bin Zhu, Jingjing Chen, Chong-Wah Ngo, Yu-Gang

Research Collection School Of Computing and Information Systems

Large Multi-modal Models (LMMs) have significantly advanced a variety of vision-language tasks. The scalability and availability of high-quality training data play a pivotal role in the success of LMMs. In the realm of food, while comprehensive food datasets such as Recipe1M offer an abundance of ingredient and recipe information, they often fall short of providing ample data for nutritional analysis. The Recipe1M+ dataset, despite offering a subset for nutritional evaluation, is limited in the scale and accuracy of nutrition information. To bridge this gap, we introduce Uni-Food, a unified food dataset that comprises over 100,000 images with various food labels, …


Frozen Lvlms For Micro-Video Recommendation: A Systematic Study Of Feature Extraction And Fusion, Huatuan Sun, Yunshan Ma, Changguang Wu, Yanxin Zhang, Pengfei Wang, Xiaoyu Du Jun 2026

Frozen Lvlms For Micro-Video Recommendation: A Systematic Study Of Feature Extraction And Fusion, Huatuan Sun, Yunshan Ma, Changguang Wu, Yanxin Zhang, Pengfei Wang, Xiaoyu Du

Research Collection School Of Computing and Information Systems

Frozen Large Video Language Models (LVLMs) are increasingly employed in micro-video recommendation (MVR) due to their strong multimodal understanding. However, existing apporches typically deploy LVLMs as fixed black-box feature extractors without systematically comparing alternative representation strategies. To address this gap, we present the first systematic empirical study on various feature extraction paradigms and integration strategies, along with hierarchical representations from frozen LVLMs for MVR. Extensive experiments on representative LVLMs reveal that hidden states from multiple decoder layers provide richer and more effective representations for MVR. Guided by this insight, we propose the Dual Feature Fusion (DFF) Framework, a lightweight approach …


Happycal: Designing Text And Image-Based Supports For Savouring Positive Work Experiences, Molly Stewart, Minghao Cai, Anthony Tang, Sam Liu, Chris Mosunic, Sowmya Somanath Jun 2026

Happycal: Designing Text And Image-Based Supports For Savouring Positive Work Experiences, Molly Stewart, Minghao Cai, Anthony Tang, Sam Liu, Chris Mosunic, Sowmya Somanath

Research Collection School Of Computing and Information Systems

Savouring positive work experiences can promote positive affect and well-being at work, yet there is limited guidance on how digital applications can support workers to engage in savouring. We developed HappyCal, a work-focused savouring application offering two forms of savouring support: text-based, a common modality in workplace reflection tools, and images, a largely unexplored approach in work-related savouring. We conducted an exploratory qualitative study where participants (N=36) used HappyCal over five days and engaged in savouring through either a text-only modality (n=17) or text input paired with image output (n=19). We found that (1) participants in both groups reported heightened …


“Alexa, Do Not Say That In Front Of My Boss!” A Cross-Cultural Comparison Of User And Ai Preferences For Privacy-Aware Smart Speaker Interactions Across Contexts, Lynne Warin, Emily Aurelia, Anthony Tang, Emily Aurelia, Delphine Reinhardt Jun 2026

“Alexa, Do Not Say That In Front Of My Boss!” A Cross-Cultural Comparison Of User And Ai Preferences For Privacy-Aware Smart Speaker Interactions Across Contexts, Lynne Warin, Emily Aurelia, Anthony Tang, Emily Aurelia, Delphine Reinhardt

Research Collection School Of Computing and Information Systems

Due to their limited ability to reason about the social context in which they are used, smart speakers pose significant privacy risks by responding in ways that may violate people's implicit social boundaries. We conducted a cross-cultural vignette study (N = 944) in Germany and Singapore to investigate how situational factors—specifically social context (bystander relationships and closeness), physical context (location), and interaction context (topic and deceptive intent)—regulate user preferences for smart speaker responses. Our results demonstrate that these factors are superior predictors of response preferences than dispositional user traits (i.e., intrinsic personal traits). We identify two distinct social dynamics: a …


Adaptive Multimodal Smart Home Control On A Raspberry Pi 5 Using Hand Gestures, Voice Cues, And User Feedback, Vaibhav Bora May 2026

Adaptive Multimodal Smart Home Control On A Raspberry Pi 5 Using Hand Gestures, Voice Cues, And User Feedback, Vaibhav Bora

Theses

A real time multimodal smart home control system deployed on a Raspberry Pi 5 is presented. The system combines hand gestures, short voice cues, and proximity aware interaction to execute household commands such as light brightness control, fan speed adjustment, and stop or kill switch actions. Lightweight gesture and keyword spotting voice classifiers were trained offline and exported to TensorFlow Lite for efficient on device inference. For more natural spoken phrases, the system additionally integrates a locally deployed pretrained offline ASR component rather than a speech recognizer trained from scratch. Using a USB camera and microphone, the system operates fully …


Pypitfall: Dependency Chaos And Supply Chain Vulnerabilities In Python, Jacob Mahon May 2026

Pypitfall: Dependency Chaos And Supply Chain Vulnerabilities In Python, Jacob Mahon

Theses

Python software development heavily relies on third-party packages. Direct and transitive dependencies create a labyrinth of software supply chains. While it is convenient to reuse code, vulnerabilities within these dependency chains can propagate through dependencies, potentially affecting downstream packages and applications. PyPI, the official Python package repository, hosts many packages and lacks a comprehensive analysis of the prevalence of vulnerable dependencies. PyPitfall, a quantitative analysis of vulnerable dependencies across the PyPI ecosystem, is introduced. The dependency metadata of 378,573 PyPI packages is analyzed. 4,655 packages that explicitly require a known vulnerable package version and 141,044 packages that permit a vulnerable …


Robustness Of Ai-Driven Histopathology Under Real-World Adversarial Examples, Ruchik N. Yajnik May 2026

Robustness Of Ai-Driven Histopathology Under Real-World Adversarial Examples, Ruchik N. Yajnik

Theses

This robustness of histopathology classification models under adversarial and real-world perturbations resembling clinical artifacts is being investigated.

Using whole-slide images from the CAMELYON17 cohort, four representative architectures—ResNet-18, ResNet-50, HIPT-2MLP, and ViT-B/16 —are benchmarked across controlled pixel-level distortions and artifact-like transformations. Adversarial methods include iterative Fast Gradient Sign, Projected Gradient Descent, Salt-and-Pepper noise, and the Adversarial Watermark—Stain Shift (AWSS). Three defense strategies—Randomized Smoothing, Adversarial Training, and an Artifact Detector—are evaluated for their ability to preserve diagnostic accuracy and model reliability. Structured perturbations consistently degrade performance, with transformer-based models showing the greatest sensitivity. The benchmark developed here offers a reproducible framework for …


Perceptual And Geometric Advances In Crowd Simulation, Bilas Talukdar May 2026

Perceptual And Geometric Advances In Crowd Simulation, Bilas Talukdar

Dissertations

Simulating realistic crowd motion remains a fundamental challenge in computer graphics and multi-agent systems, as it requires modeling both physically plausible interactions and perceptually natural behaviors. Existing crowd simulation methods typically employ simplified geometric abstractions, most commonly circular agent representations, and model navigation using either analytical interaction formulations (e.g., force, velocity, or constraint-based methods) or learned policies derived through reinforcement learning. Despite their effectiveness, these approaches often overlook detailed geometric structure and do not explicitly account for perceptual realism. This dissertation addresses these challenges by improving the realism of virtual crowd simulation through two key advancements: perceptual preference learning and …


Principles Of Privacy And Security In Artificial Intelligence And Applications, Khang Tran May 2026

Principles Of Privacy And Security In Artificial Intelligence And Applications, Khang Tran

Dissertations

Modern artificial intelligence (AI) systems have transformed critical domains such as healthcare, software engineering, finance, and the legal system. Despite their broad impact, concerns about trustworthiness, especially regarding privacy and security, remain major obstacles to wider adoption. Addressing these concerns requires both a systematic understanding of the privacy and security risks inherent in AI systems and the development of principled foundations for trustworthy AI that safeguard client privacy and security. This goal is particularly challenging because of the complexity of modern large-scale AI systems, the trade-offs between privacy and model utility, and the need to simultaneously ensure other important properties …


Differential-Geometric Methods For Neural Signed Distance Fields: Parameterized Surface Extraction And Curvature Regularization For Cad Models, Haotian Yin May 2026

Differential-Geometric Methods For Neural Signed Distance Fields: Parameterized Surface Extraction And Curvature Regularization For Cad Models, Haotian Yin

Dissertations

Neural signed distance fields have emerged as a powerful framework for representing three-dimensional geometry through continuous and differentiable neural functions. Their flexibility, resolution independence, and compatibility with gradient-based optimization make them especially attractive for surface reconstruction and geometric learning. However, despite these advantages, two fundamental challenges remain for engineering-grade applications. First, higher-order geometric properties such as curvature are difficult to model reliably during training and often require computationally expensive second-order differentiation. Second, while neural signed distance fields provide implicit surface representations, they do not directly yield a globally consistent forward map or parameterization for downstream geometric processing.

This dissertation addresses …


Holistic Dram Enhancements: From Intrinsic In-Memory Operations To Robust Security Mechanisms, Ranyang Zhou May 2026

Holistic Dram Enhancements: From Intrinsic In-Memory Operations To Robust Security Mechanisms, Ranyang Zhou

Dissertations

Dynamic Random-Access Memory (DRAM) is both the performance bottleneck and a critical security boundary of modern computing systems. Its physical properties make it an attractive substrate for near-data computation—yet those same properties expose it to disturbance-based hardware attacks. This dissertation argues that these two dimensions are not independent: the architectural choices that make DRAM efficient also reshape its threat landscape. Addressing both requires a unified approach to memory architecture and security co-design.

The first part of this dissertation attacks the memory wall through four processing-in-DRAM (PIM) frameworks. ReD-LUT and LT-PIM unify lookup-table arithmetic with charge-sharing logic, achieving up to 37.8x …


A Generative Ai-Driven Computational Framework For Industry-Scale Discovery Of Novel Battery Materials, Joy Datta May 2026

A Generative Ai-Driven Computational Framework For Industry-Scale Discovery Of Novel Battery Materials, Joy Datta

Dissertations

The growing demand for sustainable, high-energy-density electrochemical storage has motivated the exploration of multivalent-ion batteries based on earth-abundant elements such as aluminum, calcium, magnesium, and zinc. While multivalent charge carriers offer higher theoretical energy density than lithium, their practical deployment is hindered by sluggish ion transport, strong ion-host interactions, and structural degradation of electrode materials. Identifying host materials that can reversibly accommodate multivalent ions while maintaining structural integrity remains a fundamental challenge. The dissertation develops a scalable, end-to-end computational framework that integrates density functional theory (DFT), machine learning (ML), and generative artificial intelligence (GenAI) to accelerate the discovery of next-generation …


Toward Learning-Based Reconstruction And Part Decomposition Of Man-Made 3d Geometry: Neural Implicit Representations And Scalable Supervision, Shen Fan May 2026

Toward Learning-Based Reconstruction And Part Decomposition Of Man-Made 3d Geometry: Neural Implicit Representations And Scalable Supervision, Shen Fan

Dissertations

Digital three-dimensional (3D) models are central to engineering design, analysis, and manufacturing, but learning pipelines for man-made geometry often operate on sampled carriers that do not preserve all of the structure present in exact CAD representations. This dissertation studies learning-based reconstruction and part decomposition for structured man-made 3D geometry, from general object benchmarks to CAD-derived datasets, with a focus on neural implicit representations trained from signed-distance samples, point clouds, and tessellated meshes. The goal is to make these models more accurate, more part-aware, and more consistently supervised.

First, signed distance function (SDF) reconstruction with implicit neural representations is improved through …


Streamlined Biomedical Image Processing Pipelines, Jiehyun Kim May 2026

Streamlined Biomedical Image Processing Pipelines, Jiehyun Kim

Graduate Doctoral Dissertations

This dissertation focuses on advancing carotid artery analysis through a series of visualizations and deep learning tools for calcified plaque assessment and related biomedical imaging tasks. Accurate plaque evaluation is essential, but current workflows depend on slow, clinician-dependent manual review. To address these limitations, this work introduces the CACTAS framework, a set of tools and methods that enable fast and reliable plaque segmentation for clinicians.

The first study, the CACTAS-Tool, provides a web-based labeling tool that enables clinicians to label plaque directly in three dimensions through a streamlined one-click interface. This tool significantly reduces the effort required to generate high-quality …


Static Data-Race Detection For Gpu Programs: Behavioral Types With Partial Completeness Guarantees, Zhen Rong Liew May 2026

Static Data-Race Detection For Gpu Programs: Behavioral Types With Partial Completeness Guarantees, Zhen Rong Liew

Graduate Doctoral Dissertations

GPUs are essential to modern computing but notoriously difficult to program correctly. Static analysis tools can verify data-race freedom, but their over-approximations produce spurious reports of data races that do not occur, limiting their practical usefulness. This dissertation establishes when Memory Access Protocols (MAPs), a compositional abstraction modeling memory access behavior between synchronization barriers, can be simultaneously sound and complete. We first prove that MAP-based analysis is sound and complete for well-typed Jaminan programs---those without data-dependent array indexing. This result establishes the theoretical boundary: completeness is achievable when data-dependent control flow and indexing are absent. Jaminan extends MAPs with symbolic …


Du Undergraduate Showcase Abstracts: Research, Scholarship, And Creative Works, Sophia Wismar, Henry Staats, Allison Metzler, Chloe Puckett, Rachel Levine, Christa Kilpatrick, Scott Wolf, Joe Walsh, Grace Doolittle, John Engebreston, Zoe Lopez, Christopher Aaby, Audrey Duff, Timothy Sisk, Katelyn Lamberton, Angela Narayan, Gilkah Argueta, Habiba Samir, Girena Tesfazghi, Genet Kenore, Sinit Tesfamariam, Effley Brooks, Abi Newell, Megan Doherty, Natalie Baer, Lexi Blood, Talya Riciputi, Jessica Jimenez, Devin Hernandez, Lynn Clark, Taj Kumar, Sunil Kumar, Allen Rutman, Mira Pronobis, Tess Carson, Anna Sher, Frankie Stroud, Tamra Pearson D'Estree, Alyssa Wilson, Emily Melnick, Jenalee Doom, Yihang Gao, Gwendolyn Geiger, Noah Gettle, Scott Nichols, Clare Ayoub, Cara Dienno, Sunny Walker, Zoe Hansen, Maya Wheeler, Addison Rice, Patrick Martin, Sanjana Acharya, Daniel Mcintosh, Amanda Mckellips, Calli Cain, Justin Blake, Peter Sokol-Hessner, Natalie Miller, Max Weisbuch, Sophia Dellota, John Macikas, Charlotte Snow, Mark Siemens, Zoe Lynch, Alex Huffman, Prachi Shah, Jason Roney, Halcyon Levi, Nicole Herzog, Andrea Koly, Daniel Linseman, Annie London, Xi Yang, Avery Zwisler, Jane Smith, Chaz Contag, Michael Kerwin, Lucy Rand, Grace Schroeder, Michelle Rozenman, Nissa Tapper, Guiming Zhang, Mateo Mazariego-Halpern, Keith Meyer, Julie Do, Dakota Park-Ozee, Travis Herink, Kara Neu, Jonathan Plomin, Eve-Odine Duchaufour, Debbie Gale Mitchell, Tennyson Anderson-Stricklin, Lily Treitz, Samantha Rosenberger, Sierra Griffith, Finley Joseph, Daniel Sampson, Emmy Davis, Skyler Kasnoff, Evon Lopez, Vivian Nguyen, Cassy Young, Franklin Sellner, Martin Tobon, Ila Graham, Zach Billings, Holden Hedit, Decatur Boland, Paul Kosempel, Cory Chandler, Jay Mahoney, Sam Dragan, Susan Dagget, Yarrow Ator, Heidi Vuletich, Owen Weber, Andrew Kloeppel, Petersen Gray, Mandi Schaeffer-Fry, Razleen Bassra, Bryanna Rodriguez, Christina Blue, Taubie Sanders, Rachel Epstein, Luke Milburn, Camryn Evans, Ezra Martinez, Mary Westwood, Gabri Notov, Robin Tinghitella, Lilou Cabrol, Eli Barbour, Juliet Mendik, Selma Myers, Zac Wise, Noah Fahlin, Michelle Knowles, Abigail Hopper, Michael Greenberger, Romi Laclair, Sarah Watamura, Sabrina Efroymson, Casey Barker, Sydney Seltzer, Bryn Yehle, Jennifer Hoffman, Sara Garcia, Ryuka Nagamine, Trevor Briggs, Remy Le Boeuf, Elena Krone, Eileen Farrell, Regan O'Rourke, Elena Roel, Greg Mortimer, Ali Ayoub, Stefani Langehennig, Caitlin Turk, Logan Scmid, Stefan Chavez-Norgaard, Karen Kim, Tatiana Peccedi, Courtney Cassidy, John Sebesta, Rhianna Lewis, Janice Bening-Lacek, Vivian Lawless, Mckenna Hanson, Jeffrey Amidon, Riya Joshi, Ram Ambre, Brady Worrell, Perrin Schneider, Ali Azadani, Brooke Agulnek, Lyndsie Salvagio, Elise Siemanowki, Yan Qin, Andre Allen, Melodie Nguyen, Megan Livengood, Abby Reams, Saffron Hartreeve, Bri Wylie, Sarah Brookman, Mariah Loiacono, Green Russo, Abhia Lodhi, Gabrielle Welsh, Nika Spehar, Shahked Levin, Evrim Baykal, Kimberly Chiew, Jocelyn Torres, Kailey Hicks, Mykaela Tanino-Springsteen, Audrey Bellows, Akam Chahal, Madeline Tepper, Shannon Murphy, Alexa Fonseca, Deborah Han, Cassandra Perez, Oluwatoyin Alaba, Julia Roncoroni, Vy Nguyen, Nana Burn, Sarah Sasse, Rubin Tuder, Anthony Gerber, Nancy Lorenzon, Christine Vohwinkel, Camryn Gunter, Tristan Weber, Sam Rommel, Brian Michel, Muskan Fatima, Alannah Oleson, Kira Frey, Edward Garrido, Beckett Morris, Kerstin Haring, Drew Middleton, Abigail Walpert, Liam Dee, Gabby Ishaw, Cole Carnes, Maddie Weiser, Claire Fox, Valeriia Vlasenko, Kateri Mcrae, Riley Smith, Abigail Templin, Kushani Rajapaksha May 2026

Du Undergraduate Showcase Abstracts: Research, Scholarship, And Creative Works, Sophia Wismar, Henry Staats, Allison Metzler, Chloe Puckett, Rachel Levine, Christa Kilpatrick, Scott Wolf, Joe Walsh, Grace Doolittle, John Engebreston, Zoe Lopez, Christopher Aaby, Audrey Duff, Timothy Sisk, Katelyn Lamberton, Angela Narayan, Gilkah Argueta, Habiba Samir, Girena Tesfazghi, Genet Kenore, Sinit Tesfamariam, Effley Brooks, Abi Newell, Megan Doherty, Natalie Baer, Lexi Blood, Talya Riciputi, Jessica Jimenez, Devin Hernandez, Lynn Clark, Taj Kumar, Sunil Kumar, Allen Rutman, Mira Pronobis, Tess Carson, Anna Sher, Frankie Stroud, Tamra Pearson D'Estree, Alyssa Wilson, Emily Melnick, Jenalee Doom, Yihang Gao, Gwendolyn Geiger, Noah Gettle, Scott Nichols, Clare Ayoub, Cara Dienno, Sunny Walker, Zoe Hansen, Maya Wheeler, Addison Rice, Patrick Martin, Sanjana Acharya, Daniel Mcintosh, Amanda Mckellips, Calli Cain, Justin Blake, Peter Sokol-Hessner, Natalie Miller, Max Weisbuch, Sophia Dellota, John Macikas, Charlotte Snow, Mark Siemens, Zoe Lynch, Alex Huffman, Prachi Shah, Jason Roney, Halcyon Levi, Nicole Herzog, Andrea Koly, Daniel Linseman, Annie London, Xi Yang, Avery Zwisler, Jane Smith, Chaz Contag, Michael Kerwin, Lucy Rand, Grace Schroeder, Michelle Rozenman, Nissa Tapper, Guiming Zhang, Mateo Mazariego-Halpern, Keith Meyer, Julie Do, Dakota Park-Ozee, Travis Herink, Kara Neu, Jonathan Plomin, Eve-Odine Duchaufour, Debbie Gale Mitchell, Tennyson Anderson-Stricklin, Lily Treitz, Samantha Rosenberger, Sierra Griffith, Finley Joseph, Daniel Sampson, Emmy Davis, Skyler Kasnoff, Evon Lopez, Vivian Nguyen, Cassy Young, Franklin Sellner, Martin Tobon, Ila Graham, Zach Billings, Holden Hedit, Decatur Boland, Paul Kosempel, Cory Chandler, Jay Mahoney, Sam Dragan, Susan Dagget, Yarrow Ator, Heidi Vuletich, Owen Weber, Andrew Kloeppel, Petersen Gray, Mandi Schaeffer-Fry, Razleen Bassra, Bryanna Rodriguez, Christina Blue, Taubie Sanders, Rachel Epstein, Luke Milburn, Camryn Evans, Ezra Martinez, Mary Westwood, Gabri Notov, Robin Tinghitella, Lilou Cabrol, Eli Barbour, Juliet Mendik, Selma Myers, Zac Wise, Noah Fahlin, Michelle Knowles, Abigail Hopper, Michael Greenberger, Romi Laclair, Sarah Watamura, Sabrina Efroymson, Casey Barker, Sydney Seltzer, Bryn Yehle, Jennifer Hoffman, Sara Garcia, Ryuka Nagamine, Trevor Briggs, Remy Le Boeuf, Elena Krone, Eileen Farrell, Regan O'Rourke, Elena Roel, Greg Mortimer, Ali Ayoub, Stefani Langehennig, Caitlin Turk, Logan Scmid, Stefan Chavez-Norgaard, Karen Kim, Tatiana Peccedi, Courtney Cassidy, John Sebesta, Rhianna Lewis, Janice Bening-Lacek, Vivian Lawless, Mckenna Hanson, Jeffrey Amidon, Riya Joshi, Ram Ambre, Brady Worrell, Perrin Schneider, Ali Azadani, Brooke Agulnek, Lyndsie Salvagio, Elise Siemanowki, Yan Qin, Andre Allen, Melodie Nguyen, Megan Livengood, Abby Reams, Saffron Hartreeve, Bri Wylie, Sarah Brookman, Mariah Loiacono, Green Russo, Abhia Lodhi, Gabrielle Welsh, Nika Spehar, Shahked Levin, Evrim Baykal, Kimberly Chiew, Jocelyn Torres, Kailey Hicks, Mykaela Tanino-Springsteen, Audrey Bellows, Akam Chahal, Madeline Tepper, Shannon Murphy, Alexa Fonseca, Deborah Han, Cassandra Perez, Oluwatoyin Alaba, Julia Roncoroni, Vy Nguyen, Nana Burn, Sarah Sasse, Rubin Tuder, Anthony Gerber, Nancy Lorenzon, Christine Vohwinkel, Camryn Gunter, Tristan Weber, Sam Rommel, Brian Michel, Muskan Fatima, Alannah Oleson, Kira Frey, Edward Garrido, Beckett Morris, Kerstin Haring, Drew Middleton, Abigail Walpert, Liam Dee, Gabby Ishaw, Cole Carnes, Maddie Weiser, Claire Fox, Valeriia Vlasenko, Kateri Mcrae, Riley Smith, Abigail Templin, Kushani Rajapaksha

DU Undergraduate Research Journal Archive

Abstracts from the DU Undergraduate Research Showcase.


High-Throughput Robotic Ethanol Inhibition Assays For Engineered Thermophilic Biofuel Strains, Kevin He, Daniel Olson, Marybeth Maloney, Anthony Lanahan May 2026

High-Throughput Robotic Ethanol Inhibition Assays For Engineered Thermophilic Biofuel Strains, Kevin He, Daniel Olson, Marybeth Maloney, Anthony Lanahan

Wetterhahn Science Symposium Posters

Ethanol stress assays are commonly used to evaluate microbial tolerance, metabolic adaptation, and fermentation performance. However, manual liquid handling introduces variability across replicate wells and small-volume pipetting steps, limiting reproducibility and throughput. This study developed an automated OT-2 robotic workflow to generate replicated ethanol concentration gradients for high-throughput inhibition assays in engineered thermophilic biofuel strains. Kinetic plate-reader measurements were used to quantify ethanol-dependent growth responses under anaerobic fermentation conditions. The reasearch question is: How do engineered thermophilic biofuel strains differ in ethanol-dependent growth inhibition under anaerobic fermentation conditions, and can automated robotic assays improve the reproducibility of these measurements? Can …


A Govsecops-Oriented Governance, Risk, And Compliance Platform For Continuous Authorization In Dod Il4/Il5 Environments, Anand Janjal May 2026

A Govsecops-Oriented Governance, Risk, And Compliance Platform For Continuous Authorization In Dod Il4/Il5 Environments, Anand Janjal

Journal of Cybersecurity Education, Research and Practice

Department of Defense (DoD) Impact Level 4 and Impact Level 5 (IL4/IL5) systems require continuous assurance of cybersecurity posture under stringent operational and regulatory constraints. While the NIST Risk Management Framework (RMF) and DoD DevSecOps guidance emphasize continuous authorization supported by real-time evidence, many existing Governance, Risk, and Compliance (GRC) platforms remain documentation-centric and insufficiently integrated with operational telemetry. This paper presents a GovSecOps-oriented GRC architecture that integrates vulnerability ingestion, automated Plan of Action and Milestones (POA&M) lifecycle management, dynamic risk scoring, and continuous authorization dashboards within IL4/IL5 environments. Using a Design Science Research methodology, the study develops and evaluates …


Classes Of Analytic Functions Defined By Salagean Derivative Operator Associated With Neutrosophic Generalized Poisson Distribution, Soliu O. Opeyemi Okunola, Olushola Adeyemo, Sayo A. Abidemi Gbangbala, Folorunso I. Isola Akinwale May 2026

Classes Of Analytic Functions Defined By Salagean Derivative Operator Associated With Neutrosophic Generalized Poisson Distribution, Soliu O. Opeyemi Okunola, Olushola Adeyemo, Sayo A. Abidemi Gbangbala, Folorunso I. Isola Akinwale

Neutrosophic Systems with Applications

This study introduces and analyses new subclasses of analytic functions by applying the Salagean derivative operator to the Neutrosophic Generalized Poisson Distribution (NGPD) series. We develop a model where the mean parameter is treated as an interval or set to account for indeterminacy in complex systems. By employing Stirling numbers of the second kind and decreasing factorials, we derive necessary and sufficient coefficient inequalities and inclusion relations for these new subclasses. Numerical results and graphical illustrations demonstrate the sensitivity of these functions to orientation and the neutrosophic parameter, providing a framework for applications in fields like medical imaging and network …


Optimization Of A Multi-Item Supply Chain Model With Shortages Under Parametric Type-2 Interval Environments, Sourav Kumar Kumar Giri, Totan Garai, Sahidul Islam, Haridas Mondal, Shariful Alam May 2026

Optimization Of A Multi-Item Supply Chain Model With Shortages Under Parametric Type-2 Interval Environments, Sourav Kumar Kumar Giri, Totan Garai, Sahidul Islam, Haridas Mondal, Shariful Alam

Neutrosophic Systems with Applications

Modern supply chain systems frequently operate in environments where demand, costs and inventory-related parameters are uncertain and difficult to estimate accurately. These uncertainties become more critical in multi-objective decision-making situations, where decision makers must simultaneously balance several conflicting goals. Conventional optimization techniques often fail to represent the ambiguity and vagueness present in practical decision environments. To overcome these limitations, this study develops a multi-item supply chain model for a single supplier and a single buyer by incorporating Type-2 interval representations into the modelling framework. The proposed approach introduces a structured set of arithmetic operations for Type-2 intervals to manage uncertain …


Enhanced Population Mean Estimation Using An Exponential Estimator With Known Medians Of Dual Auxiliary Variables Within A Neutrosophic Approach: Applications In Agricultural Yield Prediction, Anchal Yadav, Mukesh Kumar May 2026

Enhanced Population Mean Estimation Using An Exponential Estimator With Known Medians Of Dual Auxiliary Variables Within A Neutrosophic Approach: Applications In Agricultural Yield Prediction, Anchal Yadav, Mukesh Kumar

Neutrosophic Systems with Applications

In classical statistical theory, estimation of population parameters is generally carried out under the assumption that all observed data are precise, complete, and free from ambiguity. However, in many practical and real-world situations, data often deviate from these ideal conditions and instead appear in vague, uncertain, or interval-valued forms. Such imperfections reduce the effectiveness of traditional estimation techniques and motivate the development of more flexible and robust methodologies. To address these challenges, several improved estimators, particularly neutrosophic ratio-type estimators and their advanced extensions, have been proposed in recent literature. In this study, a new estimator known as the two auxiliary …


On Some Properties Of Generalised Regular Anti-Topological Space, Bhimraj Basumatary, Gugu Narzary, Jeevan Krishna Khaklary May 2026

On Some Properties Of Generalised Regular Anti-Topological Space, Bhimraj Basumatary, Gugu Narzary, Jeevan Krishna Khaklary

Neutrosophic Systems with Applications

This article studies Regular Anti-open sets and Generalised Regular Anti-open sets within a topological framework, addressing the limited development of anti-open structures in generalised topology. We introduce Regular Anti-open sets and establish their fundamental properties. The study is extended by defining Generalised Regular Anti-open sets, providing a broader and more flexible class of sets. Furthermore, the notions of GR-interior and GR-closure are introduced and analyzed, and their essential properties are obtained. The results contribute to a clearer understanding of generalized anti-open structures and provide a basis for further research in topology.


A Goal Programming Approach For Finding The Best Compromise Solution Of Multiobjective Linear Programming Under Neutrosophic Environment, Sultan S. Alodhaibi, Hamiden Abd El- Wahed Khalifa May 2026

A Goal Programming Approach For Finding The Best Compromise Solution Of Multiobjective Linear Programming Under Neutrosophic Environment, Sultan S. Alodhaibi, Hamiden Abd El- Wahed Khalifa

Neutrosophic Systems with Applications

Decision problems often involve multiple objectives that conflict, making simultaneous optimization impossible. These problems require trade-offs to achieve a solution that balances the competing goals. In this paper, the detailed discussion that is related to linear programming (SVTrNFMOLP) with single valued trapezoidal neutrosophic numbers is made. Furthermore, this study deals with all the related parameters and discussion. As rank function and due to its definition, the SVTrNFMOLP is transformed in the crisp MOLP. It is noticed that goal programming is best to get the best compromise solution. The advantages of the proposed approach are: The use of Tr allows the …


Distributed File Carving, Brad J. Baudin May 2026

Distributed File Carving, Brad J. Baudin

LSU Master's Theses

File carving is a fundamental technique in the digital forensics community, enabling analysts to recover deleted files from disk images without relying on filesystem metadata; however, as storage capacities continue to increase, modern file carving tools face significant scalability challenges, with carving time growing substantially alongside disk image size, particularly in the presence of file fragmentation. Fragmentation, a common behavior in modern filesystems, distributes file data across non-contiguous disk blocks to maximize space utilization, and in large disk images this distribution can span wide logical distances, increasing the search space and reducing carving efficiency, causing traditional approaches to struggle within …


Epileptic Seizure Prediction From Eeg Using Continual Learning With Cnns, Adnan Amin, Ammar Bathich, Feras Al-Obeidat, Safa Naes, Maria Jose Sousa May 2026

Epileptic Seizure Prediction From Eeg Using Continual Learning With Cnns, Adnan Amin, Ammar Bathich, Feras Al-Obeidat, Safa Naes, Maria Jose Sousa

All Works

Epilepsy is a persistent neurological disorder that affects over 50 million people worldwide, with nearly one-third of patients remaining unresponsive to conventional therapeutic treatments. This study introduces a progressively adaptive seizure prediction framework designed to enhance early detection and clinical decision-making. The proposed model employs a deep learning strategy grounded in continual learning (CL) principles, using Convolutional Neural Networks (CNNs) in combination with knowledge distillation techniques. This enables the model to assimilate new data while retaining previously learned information. The approach was evaluated on the publicly available Bonn University EEG dataset, following a sequential learning process in which each successive …


Vigor: Virtual Intelligence For Gaze Observation And Representation, Meherun Nesa Shraboni May 2026

Vigor: Virtual Intelligence For Gaze Observation And Representation, Meherun Nesa Shraboni

Theses and Dissertations

Eye tracking in modern XR head-mounted displays can capture high-frequency gaze data at 90–120 Hz, generating thousands of samples within a single 30-second interaction. At the same time, the XR market has grown to millions of active users worldwide, with major platforms such as Meta investing heavily in eye-tracking-enabled devices. Despite this large-scale adoption and data availability, most applications still rely on hand-controller input, with gaze either processed offline or reduced to a simple pointing signal. As a result, the majority of temporally rich gaze information remains unused in real-time interaction, limiting system responsiveness, reducing interaction fidelity, and preventing effective …