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Metagenomic Polymorphic Toxin Effector And Immunity Profiling Predicts Microbiome Development And Disease-Related Dysbiosis, Hunter W. Schroer, Francesco Beghini, Juan Antonio Raygoza Garay, Nicholas A. Christakis, Dustin E. Bosch

Civil, Architectural and Environmental Engineering Faculty Research & Creative Works

Bacteria use antagonistic interbacterial weapons, such as polymorphic toxin secretion systems (TSS), to compete for niches in the human gut microbiome. We hypothesized that TSS influence gut microbiome development and disease-related dysbiosis. We developed a bioinformatic marker gene approach (PolyProf) to quantify TSS including ~200 effector and immunity genes and applied it to ~15,000 publicly available human metagenomes. PolyProf alpha and beta diversity readily distinguished 12 different human disease states and enabled the construction of highly accurate linear regression classifier machine learning models. Elastic net machine learning models integrating bacterial taxonomy with PolyProf had strong predictive value for 12 disease …

Statewide Corridor Evacuation Response And Re-Entry Behaviors In Florida During Hurricane Irma, Xin Wang, Yuan Zhu, Hong Yang, Kun Xie

Electrical & Computer Engineering Faculty Publications

Hurricane Irma stands as one of the most destructive tropical storms to make landfall in the United States, particularly impacting the State of Florida, where it prompted the largest evacuation in history with approximately 7 million residents. The profound consequences of mass evacuation underscore the critical need to understand travel behaviors during hurricane evacuation and the recovery process. This research analyzes statewide evacuation and re-entry patterns, leveraging diverse datasets, including TTMS data from main corridors and GIS data. A statewide corridor-based empirical analysis framework is constructed to characterize evacuation and re-entry response patterns using sensor-based traffic observations. The results show …

Social Safety And Social Security: Validating Context-Specific Instruments For Slums, Liss D. Romero, Katherine Palacio, Zacheous Ako Abang, Valeria Silgado, Humberto Llinas, Leidy González, Erika Frydenlund, Daniel Bolivar, Jose J. Padilla

VMASC Publications

Social safety and social security are concepts that help explain a community's well-being by assessing how it manages and mitigate existing, or perceived, risks. However, these terms are often conflated, which can limit understanding, particularly in areas with unstable living conditions. This study explores both concepts in the context of residents living in slums. As the number of displaced people grows, slums and informal settlements are becoming increasingly common worldwide, making it essential to clarify these concepts. Residents of slums face numerous hazards, including crime, violence, inadequate housing, overcrowding, and limited access to essential services. To measure social safety and …

Probability Of Detection For Corrosion-Induced Mass Loss And Yield Strain In Metal Structures Using Fe-C Coated Long Period Fiber Gratings Sensors And Electroresistive Strain Gauges, Ying Zhuo

Doctoral Dissertations

"Graphene-based, Fe-C coated long-period fiber grating (LPFG) sensors individually reveal a causal relation between LPFG wavelength change and Fe-C mass loss. Their correlation parameters vary significantly between the sensors mainly because hydrophobic multilayer graphene and graphene oxide make sensor fabrication inconsistent. This study explores MXene-based, Fe-C coated LPFG sensors due to MXene’s inherent hydrophilic property in the presence of surface functional groups such as hydroxyl and oxygen and the probability of detection (POD) for mass loss from Fe-C coated LPFG sensors when deployed at a fixed location. A novel fabrication process incorporating Piranha solution pretreatment is proposed to ensure uniform …

Soil Texture And Organic Matter Influence Hydraulic Performance Of Stormwater Infiltration Systems Across Antecedent Moisture Conditions, Laura E. Andrade Barron

Graduate Studies Theses and Dissertations 2026

Stormwater infiltration systems are widely used to improve urban stormwater management by promoting drainage and groundwater recharge while treating nonpoint source pollution such as nutrients in surface runoff. Nutrient removal and hydrologic performance of these systems are closely coupled and both are dependent on characteristics of underlying soils. In this study, laboratory flow-through experiments were conducted using 30 intact cores taken from six soil types with different textures (0.99-16.63% clay content) and organic matter contents (OMC 0.44-93.3%). Measured cumulative fluxes from laboratory experiments were used to calibrate numerical models simulating flow through porous media (HYDRUS-1D). Calibrated models were used to …

Integrated Corridor Management Framework For Severe Freeway Incidents, Sanjida Afroz Iqra

Graduate Studies Theses and Dissertations 2026

Traffic incidents are a major source of non-recurrent congestion on urban freeways, generating substantial mobility, safety, and economic impacts. Severe incidents that block multiple or all travel lanes are particularly disruptive because they degrade freeway operations and propagate congestion onto surrounding arterials. Effective Integrated Corridor Management (ICM) requires the ability to identify severe incidents, estimate their network-wide impacts, and anticipate the traffic conditions and driver behaviors that contribute to instability. This dissertation develops a data-driven ICM framework to address these challenges using real-world incident, crash, detector, and connected vehicle data from major Central Florida corridors, including I-4 and SR-417. The …

Generating Boundary Conditions For Compound Flood Modeling In A Probabilistic Framework, Pravin Maduwantha Mahanthe Gamage

Graduate Studies Theses and Dissertations 2026

Flooding in coastal riverine environments is often driven by the combined influence of multiple hydrometeorological flood drivers, including storm surge, rainfall, waves, and river discharge, which is referred to as compound flooding. A robust flood hazard assessment requires simulation of a wide range of flood driver conditions through dynamic compound flood models to capture the variability in resultant flooding. However, such assessments remain limited by the short length of observational records and the high computational cost of physics-based methods used to generate temporally varying boundary conditions. This dissertation develops a statistical framework to characterize compound flood drivers and generate large …

Discrete Element Modeling Of Granular Soils: Critical State Behavior Applied To Impact Pile Driving, Esteban Patino Marin

Graduate Studies Theses and Dissertations 2026

This thesis investigates the use of the Discrete Element Method (DEM) to study two complementary aspects of granular soil mechanics: critical state behavior of granular materials and dynamic response of driven piles in sand, both of which are governed by the same particle-scale mechanisms of dilation, contraction, and fabric evolution.

The first examines the critical state behavior and fabric anisotropy of granular soils through DEM simulations of direct shear, direct simple shear, and true triaxial tests. Sphere-cluster particles representative of a uniform sand are used in two assemblages of approximately twenty-five thousand and one hundred twenty-five thousand spheres to evaluate …

Understanding The Potential Biogeochemical Effects Of Alternative Restoration Materials: A Study Of Basalt And Other Materials, Cadie L. Barnes

Graduate Studies Theses and Dissertations 2026

Concern over the effects of microplastics on estuarine ecosystems and public health has prompted many restoration practitioners to switch from plastic materials to more “natural” substrates. These natural (BESE-biopolymer, cement-jute structures) and non-plastic (basalt fiber) materials should not contain harmful substances; however, their chemical composition is unknown. Natural materials may degrade faster in subtropical environments and release nutrients into surrounding waters, which is concerning for eutrophic restoration areas. Basalt fiber bags, made from melted basalt rock spun into fibers, have not been evaluated for biogeochemical impacts within estuaries. To address this knowledge gap, two field experiments and two laboratory experiments …

Predicting Safety And Mobility Parameters Based On Comprehensive Analytics Of Connected Vehicle Data, Lei Han

Graduate Studies Theses and Dissertations 2026

Traffic safety and mobility remain critical challenges for modern transportation systems. The emergence of connected vehicle (CV) data offers unprecedented opportunities to capture microscopic, non-aggregated driving dynamics to support precise and finer-grained traffic safety and mobility research. This dissertation develops a comprehensive CV data–driven analytical framework to advance traffic safety and mobility research across multiple roadway contexts, including intersections, segments, freeways, and urban arterial networks. For traffic safety, this research extracts both longitudinal and lateral risky driving behaviors from CV trajectories and integrates them with macro-level roadway, traffic, and visual environment features. A spatial machine learning framework is proposed for …

Computational Regolith Mechanics And Instrumentation Development For Lunar Exploration And Resource Utilization, Jared M. Long-Fox

Graduate Studies Theses and Dissertations 2026

Sustained exploration of the Moon requires quantitative understanding of lunar regolith properties to support scientific investigation, in situ resource utilization, excavation, and infrastructure development. This dissertation examines the mechanical interaction between robotic excavation systems and lunar regolith, emphasizing how regolith behavior both enables and constrains exploration-focused and exploration-enabled science. Computational excavation models were compared to laboratory data to evaluate prediction of excavation forces and to develop metrics of excavation efficiency. Laboratory experiments using high-fidelity lunar regolith simulants were conducted to characterize pressure-sinkage behavior, shear strength, and angle of repose across a range of material states. Common analytical excavation and terramechanics …

Bond Behavior Of Uhpc-Nsc Interfaces For Bridge Deck Repair Under Flexural Loading, Larissa Santiago La Banca

Graduate Studies Theses and Dissertations 2026

The use of ultra-high performance concrete (UHPC) has increased due to its superior mechanical properties and strong bond with normal-strength concrete (NSC). It is widely used as a repair material, particularly in bridge decks, where maintenance remains a challenge. However, the interface between UHPC and NSC is often the weakest region of the composite system and requires careful evaluation.

This study investigates the bond behavior between UHPC and NSC using different surface preparations, test setups, and UHPC materials. The experimental program included unreinforced beams with vertical interfaces tested under three- and four-point flexural loading, and reinforced slabs with horizontal interfaces …

Shm For Incipient Buckling Detection In Overloaded Structures Using Nonlinear System Identification Algorithms On Redundant Data Sets, Padmanabh Shridhar Desai

Dissertations, Master's Theses and Master's Reports

Structural health monitoring (SHM) detects and characterizes damage to predict failure, but failures such as buckling, which are not predicated on traditional damage modalities, are harder to detect. Direct load measurements are costly and difficult to implement (especially for dead loads) as they require copious numbers of sensors, which must be installed before loading is present. Vibration-based detection is a good alternative because it can infer global structural characteristics with relatively few sensors. This dissertation presents an SHM approach for detecting incipient buckling in structures under excessive loads based on non-linear models fit from measurements of small lateral vibrations due …

Modeling And Testing Chain Trencher Excavator And Cone Penetrometer Robotic Prospecting Systems For Lunar In-Situ Resource Utilization, Marcello C. Guadagno

Dissertations, Master's Theses and Master's Reports

The Artemis Missions aim to establish a sustained human presence on the Moon, requiring In-Situ Resource Utilization (ISRU) of water-ice deposits in permanently shadowed regions. Two critical capabilities must be developed to enable ISRU at scale: prospecting instruments that can characterize the spatial distribution and geotechnical properties of icy regolith in situ, and excavation systems that can extract hardened icy regolith efficiently. This dissertation addresses both needs through the development and testing of a Percussive Heated Cone Penetrometer (PHCP) for geotechnical prospecting and a chain trencher excavator for icy regolith mining.

The PHCP was developed across eight design iterations and …

Study Of Bearing Capacity Testing And Soil Preparation Techniques In Lunar Highlands Simulant At Field Scale, Christi A. Lecaptain

Dissertations, Master's Theses and Master's Reports

Humanity seeks to return to the surface of the Moon with the advent of the Artemis missions. These endeavors plan to be the beginning of a new era as NASA and other space organizations seek to establish a lunar base. Ahead of any astronauts or mining infrastructure, the physical groundwork will need to be laid to support the arrival of rockets, boots, and rover wheels. As surfaces are prepared, they will need to be tested and verified to ensure the stability of any structures placed on top. Understanding the bearing capacity is vital to soil quality testing. A standard terrestrial …

Application Of Passive Samplers For Exploring Remedial Progress In The Torch Lake Aoc And Interlake Variability Of Pcbs, Cailin B. Bishop

Dissertations, Master's Theses and Master's Reports

This study evaluates changes in dissolved polychlorinated biphenyl (PCB) concentrations in Torch Lake, Michigan, an Area of Concern shaped by decades of legacy contamination and evolving restoration policy. Passive samplers deployed across sites and seasons (2024–2025) show total PCB concentrations ranging from below detection to 110 pg/L (mean = 16.8 pg/L), representing an approximate 90% decline since 2005. Comparisons with regional reference lakes indicate no statistically significant difference (p = 0.84), suggesting concentrations may approach background atmospheric levels despite continued variability. Congener profiles indicate a shift toward lower-chlorinated PCBs, though interpretation of higher-chlorinated congeners is limited by slow sorption kinetics. …

Performance Comparison Of A Low Mass Vibratory Lunar Surface Compactor In Vacuum Versus Atmosphere, Robin D. Austerberry

Dissertations, Master's Theses and Master's Reports

As space agencies prepare to return to the moon, an emphasis is being placed on establishing a sustained human presence that requires permanent structures and supporting infrastructure, making site preparation a critical factor. Michigan Technological University’s Planetary Surface Technology Development Lab has developed a novel low-mass surface compaction tool for use on a site preparation vehicle in collaboration with Colorado School of Mines. Testing in vacuum is necessary to simulate a relevant environment, which is required to increase the technology readiness level of this tool to TRL 5. Testing concluded significant interactions between the presence of atmosphere and other factors. …

Accelerating Circular Economy Transition For A Sustainable Built Environment: A Systems-Based Framework, Radwa Walid Yassin Eissa

Doctoral Dissertations

"The Circular Economy (CE) has gained momentum as a transformative framework for steering the construction value chain towards greater sustainability. However, this transition requires shifts in production and consumption patterns, adoption of circular business models, and the replacement of linear practices. Despite growing interest, CE adoption in construction faces persistent challenges, including sectoral fragmentation, lack of integrated governance frameworks, and limited coordination among stakeholders. This dissertation aims to accelerate the CE transition in the built environment through a multi-scale, interdisciplinary approach spanning five modules: (1) Module 1 develops a construction value chain-structured portfolio of CE strategies and assesses their implementation; …

Deep Learning And Computer Vision-Based Modeling For A Real-Time Traffic Congestion Monitoring Framework, Neil Dustin Benedict A. Agner, Angelo B. Dela Cruz, Aster Benedict A. Mangabat, Raphael B. Alampay, Patricia Angela R. Abu

Ateneo Laboratory for Intelligent Visual Environments

As intelligent traffic systems evolve to manage complex urban mobility, conventional congestion estimation techniques, such as the time-windowed Volume-to-Capacity (V/C) ratio, fail to capture capture the real-time traffic situation. Because these methods rely on vehicles crossing a specific point, they often fail to register stopped cars, creating a ‘zero flow’ paradox where complete gridlock is incorrectly categorized as an empty, free-flowing road. To address these limitations, this study proposes an end-to-end computer vision framework utilizing the Real-Time DEtection TRansformer (RT-DETR) model to quantify vehicle volume and immediately classify a roadway’s Level of Service (LOS) through spatial density. In processing video …

Comparative Life Cycle Assessment Of End-Of-Life Crystal Silicon Photovoltaic Panels: Recovery Methods And Extended Life In Agricultural Application, Patima Chaichana, Vacharaporn Soonsin, Nattapong Tuntiwiwattanapun

Applied Environmental Research

The increasing deployment of crystalline silicon (c-Si) photovoltaic (PV) panels has raised concerns about their waste management. This study evaluated management strategies for discarded c-Si PV panels in Thailand, integrating environmental and economic analyses. Life cycle assessment (LCA) and cost-effectiveness analysis (CEA) were applied. The LCA can be divided into 2 parts: (1) secured landfill vs decentralized recycling by existing facilities vs centralized full recovery and (2) reusing PV panels in agricultural applications. The results revealed that secured landfills were the most environmentally burdensome (34.43 Pt), whereas centralized recycling achieved net benefits (-211.93 Pt) through emission reductions and recovery of …

Life Cycle Assessment Of Co2-To-Methanol: Comparative Evaluation Of Direct And Alcohol-Assisted Hydrogenation Routes, Chayet Worathitanon, Naphat Chansonthi, Pawat Pinthong, Kritsana Suwanamad, Viganda Varabuntoonvit

Applied Environmental Research

The increasing severity of global warming, primarily driven by greenhouse gas emissions, underscores the urgent need for CO2 reduction and utilization strategies. Converting CO2 into methanol presents a promising approach, as methanol serves both as a fuel and a feedstock in various industries. This study evaluates the life cycle environmental impacts of three methanol production routes: (1) direct CO2 hydrogenation, (2) ethanol-assisted CO2 hydrogenation, and (3) propanol-assisted CO2 hydrogenation. Two energy scenarios are considered: conventional energy and wind power. Process simulations were performed using Aspen Plus V.14, and inventories were analyzed through Life Cycle Assessment (LCA) using the ReCiPe 2016 …

Unveiling Microplastic Removal And Characteristics In Wastewater From Two Municipal Wastewater Treatment Facilities In Indonesia, Nurul Setiadewi, Prayatni Soewondo, Cynthia Henny

Applied Environmental Research

Wastewater treatment plants (WWTPs) are considered an entrance pathways for microplastic (MP) pollution in aquatic environments. This study reveals the removal and characteristics of MPs in wastewater from two municipal WWTPs in Indonesia. The influent contained 17.1 ± 5.65 particles L-1 (WWTP A) and 15.45 ± 4.31 particles L-1 (WWTP B), whereas the effluent contained 1.41 ± 0.01 and 1.5 ± 0.16 particles L-1. The removal efficiency was 91.75% for WWTP A and 90.32% for WWTP B, with no statistically significant difference (p > 0.05). WWTP A employed advanced treatment units, whereas WWTP B used a conventional pond-based system. MPs were …

Assessment Of The Influence Of Human Activities On The Occurrence Of Forest Fires In Thailand Via Multiple Linear Regression (Mlr), Sittipong Ruktamatakul, Jirarat Insuk, Benjaporn Pinwongpet, Sarisa Ruktametakul, Pornpis Yimprayoon

Applied Environmental Research

Forest fires represent one of the most critical environmental challenges in Thailand, with impacts varying depending on forest type, fuel characteristics, terrain conditions, fire intensity, and the frequency of fire occurrence on the same landscape. While forest fires can contribute to ecosystem degradation, biodiversity loss, and the depletion of natural resources, such effects are not uniformly severe across all forest ecosystems. Understanding the human-induced factors contributing to forest fire occurrence is crucial for developing effective prevention strategies and promoting sustainable forest management. This study aimed to identify the anthropogenic factors influencing forest fire areas in Thailand via multiple linear regression …

Effect Of Chromium Doping On The Uv- And Sunlight-Driven Photocatalytic Performance Of Srtio3, Ro’Ikhatul Jannah, Dianisa Khoirum Sandi, Fahru Nurosyid, Risa Suryana, Didier Fasquelle, Yofentina Iriani

Applied Environmental Research

Chromium (Cr)-doped strontium titanate (SrTiO3, STO) photocatalysts with compositions of SrTi1-xCrxO3 (x = 0, 5, and 10%) were prepared via the coprecipitation method. This study aimed to investigate the effects of Cr doping on structural, morphological, and optical properties. Furthermore, this work aimed to examine the photocatalytic performance of pure and Cr-doped STO against methylene blue (MB) degradation under ultraviolet (UV) and sunlight exposure. X-ray diffraction confirmed the formation of the cubic STO phase and the insertion of the Cr dopant in the STO structures. Furthermore, Cr doping reduced the lattice constant, crystallite size, and average particle size and narrowed …

Fabrication Of Acid-Modified Corn Plant By-Product-Based Biochar For Efficient Adsorption Of Sulfamethoxazole From Aqueous Solutions, Thi An Hang Nguyen, Thi Duyen Le, Thi Hang Bui

Applied Environmental Research

Antibiotic pollution is of great interest owing to growing concerns about antibiotic resistance worldwide. This study aims to fabricate acid-modified biochar (CBM-A) from corn plant byproducts (CRs) for sulfamethoxazole (SMX) adsorption in aqueous solutions. CBM-A was synthesized via pyrolysis at 700 °C and modified with 14% H3PO4. Kinetics, isotherms, and thermodynamics were investigated in combination with material characterization to elucidate the adsorption behaviors and mechanisms. The results showed that pyrolysis and acid modification effectively enhanced SMX adsorption by CR because of the increased number of binding groups, specific surface area, and porosity. SMX adsorption on CBM-A was optimized at a …

Blue Carbon Stock Assessment And Climate Resilience Potential Of Mangrove Forest In Hung Thang Commune, Vietnam, Hla Phong Ko, Pham Hong Tinh, Nguyen Thuy Duong

Applied Environmental Research

Mangrove forests are vital blue carbon sinks that contribute to climate change mitigation and coastal resilience. This study assessed the carbon stock and spatial‒temporal dynamics of a mangrove forest in Hung Thang commune, Hai Phong Province, Vietnam, via a combination of field measurements, soil organic carbon (SOC) analysis, and normalized difference vegetation index (NDVI)-based remote sensing models. The results revealed that mangroves in the Hung Thang community store an average of 87.42 tC ha-1, with SOC accounting for approximately 19% of the total carbon. A generalized additive model (GAM) analysis revealed a consistent increase in carbon stocks between 1996 and …

Fabrication Of Urea With Amorphous Silica To Increase Rice Growth In Saline Soils, Thi Ha Chi Nguyen, Thi Hang Thuc Ha, Minh Phuong Nguyen, Ngoc Chuc Pham, Quang Bac Nguyen, Nguyen Huy Tuan Do, Ngoc Nhiem Dao, Trung Kien Nguyen

Applied Environmental Research

In recent decades, the decrease in rice cultivation areas in Vietnam, particularly in the Mekong River Delta, caused by climate change and soil salinization, has posed serious challenges for sustainable development. In addition to irrigation and agronomic practices, fertilizers that sustain rice growth under saline conditions play a crucial role in improving crop productivity. Amorphous silica has been reported to increase plant tolerance to drought, salinity, and heavy metal stress. In this study, nanosilica-coated urea (UCS) fertilizers were synthesized by coating urea granules with 1–5 wt% amorphous silica. The products were characterized by SEM, XRD, FTIR, TG‒DSC, and EDX to …

Heavy Metals And Organic Carbon In Sediments Of Seagrass Sediments Of Trang Province, Thailand, Siriporn Pradit, Pornthep Wirachwong, Thongchai Nitiratsuwan, Sujaree Bureekul, Supraewpan Lohalaksanadech, Thawanrat Kobkeatthawin, Monticha Jirajaras, Prakrit Noppradit, Sanya Sirivithayapakorn

Applied Environmental Research

In this study, the accumulation of heavy metals (Cd, Cr, Cu, Fe, and Pb) in water, suspended sediments, sediments, and seagrass in Kalase Bay, Trang Province, Thailand, during the 2024 dry season was investigated. These findings indicate that the enrichment factor (EF) for all the metals was less than 1, suggesting that anthropogenic contamination is not a significant concern in the area. The translocation factor (TF) values were less than 1 for all the metals except Cu, whose TF was greater than 1; however, these values were not statistically significant, indicating limited phytoextraction capacity. The bioconcentration factor (BCF) values for …

Spatial Modeling Of Natural Disaster Risk By Integrating Hazard, Vulnerability, And Exposure Factors Using Geospatial Techniques : Evidence From Mueang Tak District, Thailand, Suphatphong Ruthamnong

Applied Environmental Research

This study presents a comprehensive multihazard risk assessment for Mueang Tak District, Thailand, that integrates hazard, vulnerability, and exposure (H-V-E) dimensions. By utilizing geographic information systems (GIS) and remote sensing, the analytic hierarchy process (AHP) was employed to prioritize critical risk factors. GIS analysis integrated multisource spatial data, including Landsat 9 and Sentinel-2 imagery, CHIRPS precipitation, and SRTM-derived topography, while AHP weights were established on the basis of expert judgment and socioeconomic indices such as the relative wealth index (RWI) and population statistics. The results delineate distinct spatial risk clusters: high landslide potential is concentrated in the steep terrain of …

Carbon Stock Assessment In Sonneratia Apetala Afforested Mangroves : A Case Study From Cox’S Bazar, Bangladesh, Mohammad Ismail, Sayed Abu Johany, Tanmoy Dey, Zakia Sultana Teasa, Trishna Das, Prabal Barua, Tonima Hossain, Sajib Ahmed

Applied Environmental Research

Sonneratia apetala is a key species for mangrove afforestation projects in Bangladesh and plays a crucial role in ecosystem restoration and carbon sequestration. The research on how the total carbon stock (TCS) varies across S. apetala plantations in Cox’s Bazar remains limited. Thus, in this study, the biomass and soil carbon stock were quantified across nine S. apetala afforested sites in Cox’s Bazar to assess spatial variation and influencing factors. The total biomass carbon (TBC) was calculated by summing the aboveground (AGBC) and belowground (BGBC) biomass carbon, while the soil organic carbon stock (SOCS) was determined from the 0–40 cm …