Digital Commons Network^™

Synthesis And Characterization Of Silver-Gold Nanocage With Enhanced Thermal Stability, Victoria Ten

Honors Undergraduate Theses

Silver-gold nanocages have attracted considerable research interest recently due to their excellent performance in the fields of biomedicine and photocatalysis. These applications oftentimes manipulate at elevated temperatures and therefore impose demands on the thermal stability of the cage structures. To better understand this subject, in this work, we systematically evaluated the thermal stability of two nanocages with different wall thicknesses of 3.8 nm and 13 nm, both in the solution-phase (diethylene glycol) and solid-phase (in-situ STEM). The results revealed that the nanocages with thicker walls exhibited better thermal stabilities in both phases. By monitoring and analyzing the morphology changes of …

Whole Exome Sequencing Identifies A Novel Mutation In Aspm And Ultra-Rare Mutation In Cdk5rap2 Causing Primary Microcephaly In Consanguineous Pakistani Families, Ehtisham Ul Haq Makhdoom, Haseeb Anwar, Shahid Mahmood Baig, Ghulam Hussain

Department of Biological & Biomedical Sciences

Background & objectives: Primary Microcephaly (MCPH) is a rare neurogenetic disease, manifesting congenitally reduced head circumference and non-progressive intellectual disability (ID). To date, twenty-eight genes with biallelic mutations have been reported for this disorder. The study aimed for molecular genetic characterization of Pakistani families segregating MCPH.
Methods: We studied two unrelated consanguineous families (family A and B) presenting >2 patients with diagnostic symptoms of MCPH, born to asymptomatic parents. We employed whole-exome sequencing (WES) of probands to find putative causal mutations. The candidate variants were further confirmed and analyzed for co-segregation by Sanger sequencing of all available members of each …

Characterization Of Nanoparticles Using Inductively-Coupled Plasma Mass Spectrometry, Jabez D. Campbell

Graduate Theses/Dissertations

Nanomaterials are a relatively new class of materials that have many applications which span a wide host of fields from medical products to consumer products. The possible compositions and forms of nanomaterials are just as varied as the applications. Therefore, a versatile characterization method is needed for researchers and regulators alike to ensure nanomaterials are properly used. Single Particle Inductively Coupled Plasma Mass Spectrometry (SP-ICP-MS) is a functional method that could fill the characterization need in the nanomaterial research field. Using data from both SP-ICP-MS tests and data from literature established characterization methods, the viability of making SP-ICP-MS the standard …

Synthesis And Characterization Of Chitosan Derivatives Intended For Gene Delivery Applications, Alex M. Mcmullen

Graduate Theses/Dissertations

Chitosan has been studied as a non-viral vector capable of efficient gene delivery due to its favorable properties such as biodegradability, biocompatibility, and is non-toxic to mammalian cells. Incorporating electrostatic interactions in non-viral vectors enhance the vector permeability. This work focuses on two parts. Firstly, cationic chitosan derivatives were synthesized using quarternary ammonium and phosphonium groups. This was achieved by coupling carboxylic acid ligands with these quarternary groups to chitosan through an amide bond. The carboxylic acid ligands were synthesized from 4-methylbenzoic acid and either triethyl phosphine or triethyl amine. The ligand was then attached to chitosan through an amide …

Development Of Peg-B-Pla Based Micelles For Neutralization Of A Toxic Peptide, Giselle Campos

Graduate Theses/Dissertations

I herein report the preparation and characterization of PEG-b-PLA block copolymer micelles and PEG-b-PLA/PLA mixed micelles as potential “plastic antidotes” for a toxic peptide, melittin. PEG-b-PLA micelles have been used in a number of biomedical applications for their biodegradability and biocompatibility. Along these lines, I investigated the colloidal stability and the peptide absorption properties of PEG-b-PLA/PLA mixed micelles. A series of PEG-b-PLA block copolymer micelles and PEG-b-PLA/PLA mixed micelles were prepared, and their colloidal stability was studied. The hydrodynamic diameters of stable micelles were determined by using Dynamic …

Nonhematopoietic Erythropoietin: A Study Of Signaling, Structure, And Behavior, Nicholas John Pekas

Dissertations and Theses

Erythropoietin (EPO) is a cytokine hormone known for initiating red blood cell proliferation by binding to its homodimer receptor (EPOR)2 in the bone marrow. Recent progress in neurobiology has shown that EPO also exerts robust neurotrophic and neuroprotective activity in the CNS. It is widely thought that EPO’s neurotrophic activity is centrally involved in its antidepressant and cognitive enhancing effects. However, EPO’s potent erythropoietic effects prevent it from being used in the clinic to treat psychiatric disorders. A chemically engineered non-erythropoietic derivative of EPO, carbamoylated EPO (CEPO), produces psychoactive effects without activating hematopoiesis. However, CEPO is expensive to produce and …

Investigating Synthetic Methods For Tio2-Nayf4 Hybrid Nanocrystals, Nurul Muttakin

Dissertations and Theses

The capacity to develop and expand the utility of a single nanostructure is one of the major issues in the field of hybrid nanocrystals. Major advancements in the fabrication of materials with multiple functionalities by combining many materials into a single nanoparticle entity are intriguing, but they still pose obstacles that must be addressed. This trend has been spurred by significant progressions in the wet-chemical synthesis of durable and easily programmable nanocrystals with various morphologies. The extent of the structural complexity of solution-based nanocrystals looks to be one of the inevitable avenues along which nanoscience will increasingly focus. We have …

Extending Plasma Proteome Coverage To Enable Biomarker Discovery, Jordan Bruce Burton

Wayne State University Dissertations

Two features make plasma a valued source of health information: First, plasma contains secreted proteins from all tissues in the body and can, therefore, provide information about the health status of all tissues. Second, plasma is available in large quantity using a minimally invasive procedure that is well tolerated. The status of plasma as a valued source of health information is matched by the difficulty in extracting proteome information from the samples. Using state of the art instrumentation a standard analysis of plasma yields quantitative information on approximately 300 proteins. Extreme fractionation strategies coupled with increased mass spectrometry time extends …

The Effect Of Autophagy Related Protein 10 And Its Mutants On Autophagic Activity, Sk Nadia Rahman Silvia

Senior Honors Theses and Projects

Autophagy is the cellular degradation process in which cellular contents are encapsulated by double-membrane vesicles, autophagosomes, and delivered to the vacuole to be degraded and recycled. This process is important for cell health and homeostasis. There are approximately 32 different autophagy-related proteins involved. Atg10 is an enzyme that may affect overall autophagic activity by changing autophagosome size and/or number. Our goal is to find mutants that cause a significant, partial loss in Atg10’s activity by mutating some residues near the active site and testing the functionality of these mutants by performing western blots and enzymatic assays. Here we show that …

Introducing An H113a Mutation Into Atg10 Y73q To Reduce Autophagic Activity And Understand The Effect Of Atg On Autophagosome Size And Number, Konrad L. Lautenschlager

Senior Honors Theses and Projects

Autophagy is an essential recycling process that occurs within eukaryotic cells, however, the individual functions of the current thirty-two known autophagic proteins are not yet entirely understood. At this time, it is known that the autophagic protein Atg7 works upstream of both Atg3 and Atg10. Atg3 is affected by Atg7 and allows for the attachment of Atg8 and the lipid PE which is part of the autophagosome membrane. The Atg10 pathway is also affected by Atg7 but attaches Atg12 to Atg5 which upregulates the function of Atg3 and ultimately Atg8 lipidation. These protein interactions are necessary for forming autophagosomes, large …

Photophysical, Electrochemical, And Catalytic Studies Of Anthraquinone And Pyridoxyl-Based Sensors And Development Of Ruthenium Photosensitizers, Anwar Hussain

Dissertations and Theses

In the past, we have demonstrated the photophysical properties of several anthraquinone derivatives that act as a luminescent host for various environmental and biological cations. Here we extend our expertise in photochemistry to the class of chemicals containing the pyridoxal moiety. Several ligands were synthesized using eco-friendly, simple, one-step reactions via Schiff base and condensation reactions. The optical properties of these ligands were examined with a series of cations. We demonstrated the ability to detect the biologically important zinc ion in living cells such as RAW 264.7 and HEK 293 via fluorescence signaling. In addition, we extend our explorations to …

Establishing A Biochemical System For The Purification And Atpase Activity Of Gst-Dbp5, Sarah R. Utley, Rachel E. Rigsby Phd, Rebecca L. Adams Phd

Science University Research Symposium (SURS)

The export of mRNA out of the nucleus is a crucial step for eukaryotic gene expression. The export of mRNA transcripts is aided by Mex67, which allows export through the nuclear pore complex doorways in the nuclear envelope. Once out of the nucleus, a protein known as Dbp5, bound to ATP, Gle1, and Nup42 aids in the directionality of mRNA export by helping remove Mex67 from the mRNA strand. Following interaction with RNA, Dbp5 then hydrolyzes ATP so that it unbinds the mRNA, allowing for enzyme recycling. Previous efforts worked towards the purification of Dbp5, but the attempts were unsuccessful …

A Novel Series Of Putative Brugia Malayi Histone Demethylase Inhibitors As Potential Anti-Filarial Drugs, Tamara Kreiss, Tyler Eck, Brittany Hart, Sreedhar Tummalapalli, David Rotella, John Siekierka

Department of Chemistry and Biochemistry Faculty Scholarship and Creative Works

Filariasis, caused by a family of parasitic nematodes, affects millions of individuals through-out the tropics and is a major cause of acute and chronic morbidity. Current drugs are largely used in mass drug administration programs aimed at controlling the spread of disease by killing microfilariae, larval forms of the parasite responsible for transmission from humans to humans through insect vectors with limited efficacy against adult parasites. Although these drugs are effective, in some cases there are toxic liabilities. In case of loiasis which is caused by the parasitic eyeworm Loa loa, mass drug administration is contraindicative due to severe side …

Indoor Air Quality Through The Lens Of Outdoor Atmospheric Chemistry, Jonathan P.D. Abbatt, Douglas B. Collins

Faculty Contributions to Books

Outdoor atmospheric chemistry and air quality have been the topic of research that intensified in earnest around the mid-20^th century, while indoor air quality research has only been a key focus of chemical researchers over the last 30 years. Examining practices and approaches employed in the outdoor atmospheric chemistry research enterprise provides an additional viewpoint from which we can chart new paths to increase scientific understanding of indoor chemistry. This chapter explores our understanding of primary chemical sources, homogeneous and multiphase reactivity, gas-surface partitioning, and the coupling between the chemistry and dynamics of indoor air through the lens of …

Synthesis Of Functional Chalcone Library For Use In Aza- Dipyrromethene Dye Systems, Kendal Crawley

Murray State Theses and Dissertations

Over the past decade, Aza-Bodipy dyes (ADPs), a derivative of the extensively studied BF₂-dipyrromethene (BODIPY), have become a growing field of research due to their unique photophysical properties, high yielding synthesis, and relative stability. They possess a unique spectral window of 600 to 750 nm which is the red to near-IR region, evidenced by the blue color of many of these dyes. Increasing interest in these dyes is due to this near-IR window which is important for many applications.^1-4 ADP chromophores also have a common core motif to that of phthalocyanines which allow for coordination at their …

Development Of An Hipsc-Cortical Neuron Long-Term Potentiation Model And Its Application To Alzheimer's Disease Modeling And Drug Evaluation, Kaveena Autar

Electronic Theses and Dissertations, 2020-2023

Alzheimer's disease (AD) is commonly characterized by a loss of cognitive function due to the deterioration of neuronal synapses from the presence of senile amyloid beta-42 (Aß42) plaques. Evaluating cognitive deficits caused by Aß42 using human cortical neurons poses a challenge due to sourcing difficulties, and the use of animal models to assess drug efficacy creates biological hurdles from lack of species translatability. Recent advances in induced-pluripotent stem cell technology have enabled the development of mature, human-based cortical neuron models. The development of an hiPSC-cortical neuron differentiation protocol facilitates the exploration of disease onset and functional analysis from a patient-derived …

Development Of A Computational Application To Aid With Chemometric And Forensic Analysis Of Fire Debris Samples, Michelle Corbally

Electronic Theses and Dissertations, 2020-2023

Fire debris analysis is a forensic science discipline that determines if an ignitable liquid residue is present or absent in a fire debris sample. Currently, fire debris analysis results in categorical statements based on qualitative data, not the quantitative evidentiary value of data. The purpose of this research was to develop a novel software application to aid fire debris analysts in the identification and classification of ignitable liquid residues that are found in fire debris samples. The developed application uses target factor analysis (TFA) and Pearson correlation for compound identification in gas chromatograms using mass spectral comparison and allows for …

Polymer Derived Ceramic For Lithium-Ion Storage, And Electrospun Polyelectrolyte Fiber For Heavy Metal Ions Removal, Zeyang Zhang

Electronic Theses and Dissertations, 2020-2023

This dissertation includes two major projects. The first project investigated the great potential of polymer-derived ceramics (PDCs) as lithium-ion battery anode materials with good cycling stability and large capacity. SiCNO ceramic nanoparticles were produced by pyrolysis of polysilazane nanoparticles synthesized via an oil-in-oil emulsion crosslinking. The SiCNO nanoparticles had an average particle size of around 9 nm and contained graphitic carbon, Si3N4, and SiO2 domains. The electrochemical behavior of SiCNO nanoparticles anode was investigated to evaluate the Li-ion storage performance and understand its mechanism of Li-ion storage. The lithiation of SiCNO was observed at ~0.385 V versus Li/Li+. The anode …

Qualitative Analysis Of Agarwood Oil By Two-Dimensional Thin Layer Chromatography, Phawida Yodthongchai

Chulalongkorn University Theses and Dissertations (Chula ETD)

A comprehensive two-dimensional thin layer chromatography (2D-TLC) has been developed for the separation of agarwood oil. The system employed a single stationary phase of silica gel 60 and two different mobile phases from the set of 9:1 (v/v) hexane/ethyl acetate, 1:1 (v/v) hexane/dichloromethane, dichloromethane, and acetonitrile. The best mobile phase system was found to be dichloromethane and 9:1 (v/v) hexane/ethyl acetate in the first and second dimensional separations, respectively. This showed the greater separation results with the orthogonality (A0) of 0.6636 based on the asterisk approximation which separated 14 spots of the agarwood sample compared with 9 spots separated by …

Analyzing The Free Energy Of Ions Sampling A Voltage Gated Sodium Ion Channel, Isabel Varghese

Honors Theses

Voltage gated sodium ion channels are implicated in cardiac diseases, seizures, etc., and they play a role in maintaining ionic homeostasis in cells. Computational studies use prokaryotic model because they are simpler but function similarly to human voltage gated sodium ion channels. This study uses molecular dynamics (MD) to study three specific questions regarding voltage gated sodium ion channels of Magnetococcus marinus. The first question in this study is how the free energy of sodium diffusion compares to that of calcium ion diffusion. We were not able to find any physically significant information due to poor sampling and a lack …

Insights Into The Deglacial Variability Of Phytoplankton Community Structure In The Eastern Equatorial Pacific Ocean Using [231Pa/230Th]Xs And Opal-Carbonate Fluxes, Danielle Schimmenti, Franco Marcantonio, Christopher T. Hayes, Jennifer Hertzberg, Matthew Schmidt, John Sarao

OES Faculty Publications

Fully and accurately reconstructing changes in oceanic productivity and carbon export and their controls is critical to determining the efficiency of the biological pump and its role in the global carbon cycle through time, particularly in modern CO₂ source regions like the eastern equatorial Pacific (EEP). Here we present new high-resolution records of sedimentary ²³⁰Th-normalized opal and nannofossil carbonate fluxes and [²³¹Pa/²³⁰Th]xs ratios from site MV1014-02-17JC in the Panama Basin. We find that, across the last deglaciation, phytoplankton community structure is driven by changing patterns of nutrient (nitrate, iron, and silica) availability which, in …

Calcification, Dissolution And Test Properties Of Modern Planktonic Foraminifera From The Central Atlantic Ocean, Stergios D. Zarkogiannis, Shinya Iwasaki, James William Buchanan Rae, Matthew W. Schmidt, P. Graham Mortyn, George Kontakiotis, Jennifer E. Hertzberg, Rosalind E.M. Rickaby

OES Faculty Publications

The mass of well-preserved calcite in planktonic foraminifera shells provides an indication of the calcification potential of the surface ocean. Here we report the shell weight of 8 different abundant planktonic foraminifera species from a set of core-top sediments along the Mid-Atlantic Ridge. The analyses showed that near the equator, foraminifera shells of equivalent size weigh on average 1/3 less than those from the middle latitudes. The carbonate preservation state of the samples was assessed by high resolution X-ray microcomputed tomographic analyses of Globigerinoides ruber and Globorotalia truncatulinoides specimens. The specimen preservation was deemed good and does not overall explain …

Synthesis Of Functionalized Porphyrins For Application As Soft Materials, Dumrongsak Aryuwananon

Chulalongkorn University Theses and Dissertations (Chula ETD)

The series of functionalized porphyrins was designed and synthesized by varying para-substituents on meso-position of porphyrin ring as ether, ester, and urea with three different long alkyl chains (3-5, 7-9, 11). Afterwards, metalation of porphyrin derivatives by some 3d metals to serve as soft materials, liquid crystal, and axial ligands were introduced to provide spin-crossover property. Each series of functionalized porphyrin derivatives with three different chain lengths (3-5, 7-9, 11) and their Co(II) (3-5a,7-9a), Ni(II) (3-5b,7-9b), and Fe (III) (3-5c,7-9c) complexes were characterized by spectroscopic techniques consisting of NMR, IR, UV-visible and MS. The desired compounds were studied their mesomorphic …

Superhydrophobic Polydimethylsiloxane For Fabrication Of Digital Magnetofluidics, Pakakan Ngernpradab

Chulalongkorn University Theses and Dissertations (Chula ETD)

In this work, polydimethylsiloxane (PDMS), a well-known material for microfluidic devices, was used to fabricate a digital magnetofluidic device. The use of PDMS material allows for easy fabrication and flexibility. The superhydrophobic property of PDMS surface was easily achieved using a one-pot method by reduction between chloroauric acid and sodium formate. The superhydrophobic property of PDMS surface was investigated using water contact angle (WCA) and contact angle hysteresis, which were found to be 163.9° and 0°, respectively, indicating the superhydrophobic surface. The morphology of gold coated PDMS surface was characterized using a scanning electron microscope (SEM), an X-ray diffractometer (XRD), …

Unique Features Of Alarmone Metabolism In Clostridioides Difficile, Asia Poudel, Astha Pokhrel, Adenrele Oludiran, Estevan J. Coronado, Kwincy Alleyne, Marrett M. Gilfus, Raj K. Gurung, Surya B. Adhikari, Erin B. Purcell

Chemistry & Biochemistry Faculty Publications

The “magic spot” alarmones (pp)pGpp, previously implicated in Clostridioides difficile antibiotic survival, are synthesized by the RelA-SpoT homolog (RSH) of C. difficile (RSH_Cd) and RelQ_Cd. These enzymes are transcriptionally activated by diverse environmental stresses. RSH_Cd has previously been reported to synthesize ppGpp, but in this study, we found that both clostridial enzymes exclusively synthesize pGpp. While direct synthesis of pGpp from a GMP substrate, and (p)ppGpp hydrolysis into pGpp by NUDIX hydrolases, have previously been reported, there is no precedent for a bacterium synthesizing pGpp exclusively. Hydrolysis of the 5′ phosphate or pyrophosphate from GDP …

Microbial Labilization And Diversification Of Pyrogenic Dissolved Organic Matter, Aleksandar I. Goranov, Andrew S. Wozniak, Kyle W. Bostick, Andrew R. Zimmerman, Siddhartha Mitra, Patrick G. Hatcher

Chemistry & Biochemistry Faculty Publications

With the increased occurrence of wildfires around the world, interest in the chemistry of pyrogenic organic matter (pyOM) and its fate in the environment has increased. Upon leaching from soils by rain events, significant amounts of dissolved pyOM (pyDOM) enter the aquatic environment and interact with microbial communities that are essential for cycling organic matter within the different biogeochemical cycles. To evaluate the biodegradability of pyDOM, aqueous extracts of laboratory-produced biochars were incubated with soil microbes, and the molecular changes to the composition of pyDOM were probed using ultrahigh-resolution mass spectrometry (Fourier transform–ion cyclotron resonance–mass spectrometry). Given that solar irradiation …

Pd-Based Photocatalysts For Heck C-C Cross-Coupling Reactions, Suha Ali Alshehri

Masters Theses

Heck C-C cross-coupling reaction has been widely employed in synthetic organic chemistry because of its high efficiency and simplicity, however the conventional Heck C-C cross-coupling reaction conditions involve the use of an expensive toxicant phosphine-ligated palladium complexes, and high temperature. To address these drawbacks, a highly efficient, homogeneous photocatalyst based on BODIPY for the Heck C-C cross-coupling reactions of aryl iodide and methyl acrylate in DMF solvent under inert conditions has been developed. The 4-Py-BDP-Pd, 3-Py-BDP-Pd and, 2-Py-BOD-Pd catalysts were synthesized and purified using column chromatography. The optical properties of products and intermediates were studied by UV/vis absorption and fluorescence …

Progress Towards Next Generation Modulators Of Ctbp's Oncogenic Effects, Jacqueline L. West

Theses and Dissertations

Human C-terminal binding proteins (CtBP1 and CtBP2) are transcriptional coregulators of multiple genes in the human genome, including tumor suppressor genes (e.g., Bik, PTEN, BRCA1, and E-cadherin) as well as oncogenes (e.g. MDR1 and Tiam1). Both homologues of CtBP are overexpressed in many types of cancer, including breast cancer (92%), ovarian cancer (83%), colorectal cancer (64%), hepatocellular carcinoma (60%), gastric cancer, prostate cancer, and pancreatic adenocarcinoma. Further, expression levels of CtBP correlate with worse prognostic outcomes and more aggressive tumor features because it promotes proliferation, epithelial-mesenchymal transition, and cancer stem cell self-renewal activity.

Our laboratory has identified a lead inhibitor …

Investigation Of Antibacterial And Photocatalytic Efficiency Of Green Zno Nanoparticles That Synthesized With Celosia Cristata Flower Extract, Mahmure Özgür, Özgür Duygulu, Melda Altikatoğlu Yapaöz

Turkish Journal of Chemistry

Increasing interest in green chemistry has led scientists to an environmentally friendly nanoparticle synthesis approach that has many advantages, such as simple, affordable and versatility for a wide range of commercial production. In this study, green synthesis of zinc oxide nanoparticles (ZnO NPs), which is widely researched in the field of nanotechnology, was performed under different conditions (volume ratio of CC flower extract to Zn(CH3COO)2 solution, time, pH and temperature) using the aqueous extract of Amarant (Celosia cristata L., CC, cockscome) plant flowers. Produced ZnO NPs were characterized by UV-Vis absorption spectroscopy, Fourier transform infrared spectroscopy (FTIR), high-resolution transmission electron …

Supramolecular Solvent-Based Microextraction For The Preconcentration Of Pb2+ Andcd2+ Prior To Spectrophotometric Detection, Huma Zafar, Faheem Shah, Rafaqat Ali Khan, Asad Muhammad Khan, Jan Nisar, Bushra Ismail

Turkish Journal of Chemistry

Supramolecular solvent-based dispersive liquid-liquid microextraction technique has been developed as a preconcentration tool for the determination of trace level of Pb2+ and Cd2+. Dodecanol dispersed in tetrahydrofuran has been utilized as a supramolecular-solvent system for the extraction of analytes prior to their quantitative determination with graphite furnace atomic absorption spectrophotometer. Both Pb2+ and Cd2+, which were efficiently extracted by supramolecular solvent system, were complexed with dithizone followed by the addition of supramolecular solvent. The experimental variables that could possibly influence the extraction efficiency, i.e. pH value, temperature, sample volume, centrifugation time, rate of centrifugation, ionic strength, etc. were subjected to …