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Dendritic Polymers As Bonded Stationary Phases In Capillary Electrochromatography, Chiayu Helen Chao

Seton Hall University Dissertations and Theses (ETDs)

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Magnetic Clusters On Single-Walled Carbon Nanotubes: The Kondo Effect In A One-Dimensional Host, Teri W. Odom, Jin-Lin Huang, Chin Li Cheung, Charles M. Lieber

Barry Chin Li Cheung Publications

Single-walled carbon nanotubes are ideal systems for investigating fundamental properties and applications of one-dimensional electronic systems. The interaction of magnetic impurities with electrons confined in one dimension has been studied by spatially resolving the local electronic density of states of small cobalt clusters on metallic single-walled nanotubes with a low-temperature scanning tunneling microscope. Spectroscopic measurements performed on and near these clusters exhibit a narrow peak near the Fermi level that has been identified as a Kondo resonance. Using the scanning tunneling microscope to fabricate ultra-small magnetic nanostructures consisting of small cobalt clusters on short nanotube pieces, spectroscopic studies of this …

Dynamics And Folding Of Single Two-Stranded Coiled-Coil Peptides Studied By Fluorescent Energy Transfer Confocal Microscopy, David Talaga, Wai Leung Lau, Heinrich Roder, Jianyong Tang, Yiwei Jia, William F. Degrado, Robin M. Hochstrasser

Department of Chemistry and Biochemistry Faculty Scholarship and Creative Works

We report single-molecule measurements on the folding and unfolding conformational equilibrium distributions and dynamics of a disulfide crosslinked version of the two-stranded coiled coil from GCN4. The peptide has a fluorescent donor and acceptor at the N termini of its two chains and a Cys disulfide near its C terminus. Thus, folding brings the two N termini of the two chains close together, resulting in an enhancement of fluorescent resonant energy transfer. End-to-end distance distributions have thus been characterized under conditions where the peptide is nearly fully folded (0 M urea), unfolded (7.4 M urea), and in dynamic exchange between …

Crystallization And Preliminary X-Ray Diffraction Studies On The Dna-Binding Domain Of The Multidrug Transporter Activation Protein (Mtan) From Bacillus Subtilis, M. H. Godsey, N. N. Baranova, A. A. Neyfakh, R. G. Brennan

CUP Faculty Research

The N-terminal DNA-binding domain of the multidrug transporter activation protein (MtaN) was crystallized by the hanging-drop vapour-diffusion method using lithium chloride as a precipitant. The crystals are orthorhombic and belong to the space group I2₁2₁2₁, with unit-cell parameters a = 49.4, b = 67.8, c = 115.0 Å. Diffraction data have been collected at 100 K to 2.75 Å resolution at a synchrotron-radiation source.

Nonsteroidal Anti-Inflammatory Drugs, Acetaminophen, Cyclooxygenase 2, And Fever, Daniel L. Simmons, David Wagner, Kenneth Westover

Faculty Publications

Nonsteroidal anti-inflammatory drugs (NSAIDs) are frequently used antipyretic agents that most probably exert their antifever effect by inhibiting cyclooxygenase (COX)–2. Thus, COX-2–selective drugs or null mutation of the COX-2 gene reduce or prevent fever. Acetaminophen is antipyretic and analgesic, as are NSAIDs, but it lacks the anti-inflammatory and anticoagulatory properties of these drugs. This has led to the speculation that a COX variant exists that is inhibitable by acetaminophen. An acetaminophen-inhibitable enzyme is inducible in the mouse J774.2 monocyte cell line. Induction of acetaminophen-inhibitable prostaglandin E2 synthesis parallels induction of COX-2. Thus, inhibition of pharmacologically distinct COX-2 enzyme activity by …

Copper Complexation And Speciation In The Western South And Equatorial Atlantic Ocean, John A. Consolvo

Chemistry & Biochemistry Theses & Dissertations

Presented here are the first data on copper complexation and speciation in the South Atlantic Ocean. Samples were collected at six vertical profile stations and along the surface (1m) transect during the 1996 IOC Baseline Contaminant Survey. Copper complexation measurements were made for the surface transect (1m) samples and three of the six vertical profile stations (1m - ~500m) using differential pulse anodic stripping voltammetry (DPASV) with a thin mercury film, rotating glassy carbon disk electrode (TMFRGCDE).

A strong organic copper complexing ligand (L₁; log K' _cuL1/cu2+ > 11. 8 ± 0 .4) was detected in 57% of all …

Rnase L-Independent Specific 28s Rrna Cleavage In Murine Coronavirus-Infected Cells, Sangeeta Banerjee, Sungwhan An, Aimin Zhou, Robert H. Silverman, Shinji Makino

Chemistry Faculty Publications

We characterized a novel 28S rRNA cleavage in cells infected with the murine coronavirus mouse hepatitis virus (MHV). The 28S rRNA cleavage occurred as early as 4 h postinfection (p.i.) in MHV-infected DBT cells, with the appearance of subsequent cleavage products and a decrease in the amount of intact 28S rRNA with increasing times of infection; almost all of the intact 28S rRNA disappeared by 24 h p.i. In contrast, no specific 18S rRNA cleavage was detected in infected cells. MHV-induced 28S rRNA cleavage was detected in all MHV-susceptible cell lines and all MHV strains tested. MHV replication was required …

Structural Biology With Carbon Nanotube Afm Probes, Adam T. Woolley, Chin Li Cheung, Jason H. Hafner, Charles M. Lieber

Barry Chin Li Cheung Publications

Carbon nanotubes represent ideal probes for high-resolution structural and chemical imaging of biomolecules with atomic force microscopy. Recent advances in fabrication of carbon nanotube probes with sub-nanometer radii promise to yield unique insights into the structure, dynamics and function of biological macromolecules and complexes.

Measurements Of Excess O3, Co2, Co, Ch4, C2h4, C2h2, Hcn, No, Nh3, Hcooh, Ch3cooh, Hcho, And Ch3oh In 1997 Alaskan Biomass Burning Plumes By Airborne Fourier Transform Infrared Spectroscopy (Aftir), Jon G. Goode, Robert J. Yokelson, Darold E. Ward, Ronald A. Susott, Ronald E. Babbitt, Mary Ann Davies, Wei Min Hao

Chemistry and Biochemistry Faculty Publications

We used an airborne Fourier transform infrared spectrometer (AFTIR), coupled to a flow-through, air-sampling cell, on a King Air B-90 to make in situ trace gas measurements in isolated smoke plumes from four, large, boreal zone wildfires in interior Alaska during June 1997. AFTIR spectra acquired near the source of the smoke plumes yielded excess mixing ratios for 13 of the most common trace gases: water, carbon dioxide, carbon monoxide, methane, nitric oxide, formaldehyde, acetic acid, formic acid, methanol, ethylene, acetylene, ammonia and hydrogen cyanide. Emission ratios to carbon monoxide for formaldehyde, acetic acid, and methanol were 2.2±0.4%, 1.3±0.4%, and …

Effect Of Collagen Turnover On The Accumulation Of Advanced Glycation End Products, Nicole Verzijl, Jeroen Degroot, Suzanne R. Thorpe, Ruud A. Bank, J. Nikki Shaw, Timothy J. Lyons, Johannes Wj Bijlsma, Floris Pjg Lafeber, John W. Baynes, Johan M. Tekoppele

Faculty Publications

Collagen molecules in articular cartilage have an exceptionally long lifetime, which makes them susceptible to the accumulation of advanced glycation end products (AGEs). In fact, in comparison to other collagen-rich tissues, articular cartilage contains relatively high amounts of the AGE pentosidine. To test the hypothesis that this higher AGE accumulation is primarily the result of the slow turnover of cartilage collagen, AGE levels in cartilage and skin collagen were compared with the degree of racemization of aspartic acid (% D-Asp, a measure of the residence time of a protein). AGE (Ne- (carboxymethyl)lysine, Ne-(carboxyethyl)lysine, and pentosidine) and % D-Asp concentrations increased …

Risk Assessments For Chemical Stockpile Incinerators: Is The Supporting Guidance Adequate, Lawrence V. Tannenbaum

RISK: Health, Safety & Environment (1990-2002)

The author identifies potential deficiencies in guidance used in the United States for risk assessments of chemical weapons incinerators.

Review Of: Joe Thornton, Pandora's Poison: Chlorine, Health, And A New Environmental Strategy, William Ronnenberg Jr.

RISK: Health, Safety & Environment (1990-2002)

Review of the book Pandora's Poison: Chlorine, Health, and a New Environmental Strategy by Joe Thornton, (M.I.T. Press 2000). Appendices, notes, references, index. LC 99-057011; ISBN 0-262-20124-0 [599 pp. $34.95 cloth, Five Cambridge Center, Cambridge MA 02142-1493] .

Structural Relatedness Of Distinct Determinants Recognized By Monoclonal Antibody Tp25.99 On Ss2-Microglobulin-Associated And Ss2-Microglobulin-Free Hla Class I Heavy Chains, Smruti A. Desai, Xinhui Wang, Elvyra J. Noronha, Qinwei Zhou, Vera Rebmann, Hans Grosse-Wilde, Franklin J. Moy, Robert Powers, Soldano Ferrone

Department of Chemistry: Faculty Publications

The association of HLA class I heavy chains with ß₂-microglobulin (ß₂m) changes their antigenic profile. As a result, Abs react with either ß₂m-free or ß₂m-associated HLA class I heavy chains. An exception to this rule is the mAb TP25.99, which reacts with both ß₂m-associated and ß₂m-free HLA class I heavy chains. The reactivity with ß₂m-associated HLA class I heavy chains is mediated by a conformational determinant expressed on all HLA-A, -B, and -C Ags. This determinant has been mapped to amino acid residues 194–198 in the …

Design And Characterization Of A Synthetic Electron-Transfer Protein, Anna Y. Kornilova, James F. Wishart, Wenzhong Xiao, Robin C. Lasey, Anna Fedorova, Yeon-Kyun Shin, Michael Y. Ogawa

Chemistry Faculty Publications

A 30-residue polypeptide [H21(30-mer)] with the sequence Ac-K(IEALEGK)(2)(IEALEHK)-(IEALEGK)G-NH2 was synthesized. The circular dichroism (CD) spectrum of the peptide shows minima at 208 and 222 nm and theta(222)/theta(208) = 1.06, which indicates the formation of a self-assembled coiled-coil when dissolved in aqueous solution. The concentration dependence of the CD data can be fit to an expression that describes a two-state monomer-dimer equilibrium for the apopeptide (K-d = 1.5 +/- 0.4 mu M and theta(max) = -23 800 +/- 130 deg cm(2) dmol(-1)), showing that it has a maximum helicity of 69%. A [MTSL-C21(30-mer)] dimer was also prepared in which MTSL is …

Studies Of Sulfur Reduction Of Taurine And Taurine-Conjugated Bile Acids By Bile Acid 7Α-Dehydroxylating Bacteria, Jiang Qian

Masters Theses & Specialist Projects

Bile acids are C24 steroids that are derived in the liver from cholesterol and secreted into the intestinal lumen to aid in emulsification of dietary lipids and lipid-soluble vitamins. The indigenous intestinal microflora modify bile acids, producing up to 20 unique bile acid metabolites. The 7α-dehydroxylation of the bile acids is the most physiologically important bile acid biotransformation. All known intestinal bacteria capable of bile acid 7α-dehydroxylation are anaerobic, gram-positive rods of the genera Clostridium and Eubcicterium. Bile acid 7α-dehydroxylating bacteria often contain bile salt hydrolase, which hydrolyzes the peptide bond in taurine-conjugated bile acids to yield a free bile …

Reducing Mass Degeneracy In Sar By Ms By Stable Isotopic Labeling, Chris Bailey-Kellogg, John J. Kelley Iii, Cliff Stein, Bruce Randall Donald

Dartmouth Scholarship

Mass spectrometry (MS) promises to be an invaluable tool for functional genomics, by supporting low-cost, high-throughput experiments. However, large-scale MS faces the potential problem of mass degeneracy -- indistinguishable masses for multiple biopolymer fragments (e.g. from a limited proteolytic digest). This paper studies the tasks of planning and interpreting MS experiments that use selective isotopic labeling, thereby substantially reducing potential mass degeneracy. Our algorithms support an experimental-computational protocol called Structure-Activity Relation by Mass Spectrometry (SAR by MS), for elucidating the function of protein-DNA and protein-protein complexes. SAR by MS enzymatically cleaves a crosslinked complex and analyzes the resulting mass spectrum …

Reaction Of Caffeic Acid With Amino Acids, Yonggang Wang

Masters Theses

The reaction of caffeic acid with tryptophan was studied as a model for the reaction of caffeic acid with amino acids in the aquatic environment. Although the autoxidation reaction of caffeic acid in aqueous solution with subsequent dimerization had been previously studied, it was examined as well for comparison purposes. The present studies demonstrate that oxidized caffeic acid would react with tryptophan. The reaction, like the dimerization reaction, was catalyzed by the presence of iron(III) ions at low pH ( <4) and by hydroxide ions at high pH (10). The reaction of caffeic acid with itself yielded six products, four of which were identified by mass spectroscopy as dimers, with the other two being trimers. The reaction of caffeic acid with tryptophan yielded three product peaks. Two of the product peaks had similar retention times to the dimers from the self-reaction of caffeic acid; the third was a new product resulting from the reaction of caffeic acid with the tryptophan.

A mechanism for the reaction of caffeic acid with tryptophan has been proposed. This mechanism was based on the analysis …

Cyclodextrin Inclusion Complexes Of Betamethasone-Related Steroids Studied Using Hplc, Keith Gerald Flood

Seton Hall University Dissertations and Theses (ETDs)

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High Efficiency Separation Of Microbial Aggregates Using Capillary Electrophoresis, J. M. Schneiderheinze, Daniel W. Armstrong, G. Schulte, David J. Westenberg

Chemistry Faculty Research & Creative Works

Recent advances in the technique of capillary electrophoresis have demonstrated fast, highly efficient separation of mixtures of intact microbes. This paper describes the application of this technique for the separation of microbial aggregates of Micrococcus luteus, Saccharomyces cerevisiae, or Alcaligenes faecalis. The aggregates of these microbes were resolved into several highly efficient peaks with analysis times under 10 min and efficiencies approaching 1 000 000 plates m-1 in some cases. A reproducible relationship was found between the electrophoretic mobility and the aggregation number or size of the cluster under a given set of experimental conditions. Often, cellular aggregation was reversible …

42nd Rocky Mountain Conference On Analytical Chemistry

Rocky Mountain Conference on Magnetic Resonance

Abstracts from the 42nd annual meeting of the Rocky Mountain Conference on Analytical Chemistry, co-sponsored by the Colorado Section of the American Chemical Society and the Rocky Mountain Section of the Society for Applied Spectroscopy. Held in Broomfield, Colorado, July 30 - August 3, 2000.

Pyridoxamine, An Inhibitor Of Advanced Glycation Reactions, Also Inhibits Advanced Lipoxidation Reactions: Mechanism Of Action Of Pyridoxamine, Joelle M. Onorato, Alicia J. Jenkins, Suzanne R. Thorpe, John W. Baynes

Faculty Publications

Maillard or browning reactions lead to formation of advanced glycation end products (AGEs) on protein and contribute to the increase in chemical modification of proteins during aging and in diabetes. AGE inhibitors such as aminoguanidine and pyridoxamine (PM) have proven effective in animal model and clinical studies as inhibitors of AGE formation and development of diabetic complications. We report here that PM also inhibits the chemical modification of proteins during lipid peroxidation (lipoxidation) reactions in vitro, and we show that it traps reactive intermediates formed during lipid peroxidation. In reactions of arachidonate with the model protein RNase, PM prevented modification …

Interaction Of Mitochondrial Elongation Factor Tu With Aminoacyl-Trna And Elongation Factor Ts, Ying Chun Cai, James M. Bullard, Nancy L. Thompson, Linda L. Spremulli

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Chemistry)

Elongation factor (EF) Tu promotes the binding of aminoacyl-tRNA (aa-tRNA) to the acceptor site of the ribosome. This process requires the formation of a ternary complex (EF-Tu·GTP·aa-tRNA). EF-Tu is released from the ribosome as an EF-Tu·GDP complex. Exchange of GDP for GTP is carried out through the formation of a complex with EF-Ts (EF-Tu·Ts). Mammalian mitochondrial EF-Tu (EF-Tu_mt) differs from the corresponding prokaryotic factors in having a much lower affinity for guanine nucleotides. To further understand the EF-Tu_mt subcycle, the dissociation constants for the release of aa-tRNA from the ternary complex (K _tRNA) and for …

Synthesis And Antimalarial Activity Of Sixteen Dispiro-1,2,4,5-Tetraoxanes: Alkyl-Substituted 7,8,15,16-Tetraoxadispiro[5.2.5.2]Hexadecanes, Jonathan L. Vennerstrom, Yuxiang Dong, Walter Reed Army Institute Of Research, Arba L. Ager Jr., Hong-Ning Fu, Sheri M. Walters, James K. Wood, Geoffrey Edwards, Alexandra D. Holme, W. Graham Mclean

Chemistry Faculty Publications

Sixteen alkyl-substituted dispiro-1,2,4,5-tetraoxanes (7,8,15,16-tetraoxadispiro[5.2.5.2]hexadecanes) were synthesized to explore dispiro-1,2,4,5-tetraoxane SAR and to identify tetraoxanes with better oral antimalarial activity than prototype tetraoxane 1 (WR 148999). The tetraoxanes were prepared either by peroxidation of the corresponding cyclohexanone derivatives in H₂-SO₄/CH₃CN or by ozonolysis of the corresponding cyclohexanone methyl oximes. Those tetraoxanes with alkyl substituents at the 1 and 10 positions were formed as single stereoisomers, whereas the five tetraoxanes formed without the stereochemical control provided by alkyl groups at the 1 and 10 positions were isolated as mixtures of diastereomers. Three of the sixteen …

Carbon Nanotube-Based Nonvolatile Random Access Memory For Molecular Computing, Thomas Rueckes, Kyoungha Kim, Ernesto Joselevich, Greg Y. Tseng, Chin Li Cheung, Charles M. Lieber

Barry Chin Li Cheung Publications

A concept for molecular electronics exploiting carbon nanotubes as both molecular device elements and molecular wires for reading and writing information was developed. Each device element is based on a suspended, crossed nanotube geometry that leads to bistable, electrostatically switchable ON/OFF states. The device elements are naturally addressable in large arrays by the carbon nanotube molecular wires making up the devices. These reversible, bistable device elements could be used to construct nonvolatile random access memory and logic function tables at an integration level approaching 1012 elements per square centimeter and an element operation frequency in excess of 100 gigahertz. The …

Investigations On The Use Of Ion Mobility Spectrometry For Clinical Chemistry Applications, Henri Parson Patten

Theses and Dissertations in Biomedical Sciences

The major objective of this research is to examine ion mobility spectrometry as a rapid screening tool for specific application to clinical chemistry research and laboratory use. Methodology was developed for target analytes representing several classes of physiologically active substances, including anesthetics, illicit drugs, and their metabolites. The IMS characteristics of animal tissues and other compounds such as amino acids and proteins were determined. Quality assurance and control procedures were developed for specific quality data objectives. Criteria were established relating to use of IMS for assessing the precision and accuracy of data, qualitative screening, and semi-quantitative analyses.

It was found …

Effects Of Ozone/Hydrogen Peroxide Pretreatment On Aerobic Biodegradability Of Nonionic Surfactants And Polypropylene Glycol, Mehmet Kitis, Craig D. Adams, John Kuzhikannil, Glen T. Daigger

Civil, Architectural and Environmental Engineering Faculty Research & Creative Works

Studies were conducted which used the ozone/hydrogen peroxide (O₃/H₂O₂) advanced oxidation process to pretreat three classes of compounds prior to aerobic biological treatment. The study compounds included ethylene oxide/propylene oxide (EO/PO) block copolymers, polypropylene glycols (PPGs), linear secondary alcoholethoxylates (LSAES), and alkylphenolethoxylates (APEs). After preoxidation with ozone and hydrogen peroxide (added at their stoichiometric ratio), 300 mg/L as COD samples were bioassayed in aerobic batch bioassays with a mixed liquor suspended solids concentration of 1500 mg/L. It was found that unoxidized polypropylated compounds (EO/PO block copolymers and PPGs) and LSAEs tended to be biorecalcitrant, …

Spectroscopy Of Hydrogen-Bonded Formanilide Clusters In A Supersonic Jet: Solvation Of A Model Trans Amide, A. V. Fedorov, John R. Cable

Chemistry Faculty Publications

The gas-phase structures of trans-formanilide (FA) clusters containing varying numbers of water and ammonia molecules have been investigated by resonant two-photon ionization spectroscopy in a supersonic jet expansion. A single structure is found for the 1:1 cluster of FA with ammonia in which the amide NH group functions as a hydrogen bond donor to the ammonia nitrogen. In contrast, vibronically resolved spectra reveal two distinct structures for the 1:1 cluster with water in which either the amide NH group functions as a hydrogen bond donor or the carbonyl oxygen functions as a hydrogen bond acceptor. The 1:1 clusters with both …

Powder Microelectrode Modified With Nafion-Os(Bpy)3Â 2+ And Pvp Composite And Its Catalysis For No2- Reduction, Pei-Fang Liu, Jia-Wei Yan

Journal of Electrochemistry

The modified powder microelectrode was prepared by etching a Pt (0.1 mm diameter) disk microelectrode and filling in thus formed cavity with Nation-Os(bpy)₃²⁺/PVP composite modified carbon powder. The composite modified powder microelectrode showed cyclic voltammetric behaviors changing with the mole ratio (denoted X) of SO₃^- to Os(bpy)₃²⁺ in Nafion. When X=3, a single pair of current peaks appeared near 0.6V (vs. SCE) due to Os(bpy)₃^2+/3+ redox couple. In contrast, for X=20, a pair of additional current peaks occurred near 0.4V. Both X=3 and X=20 modified powder microelectrodes strongly catalyzed the first …

Growth And Fabrication With Single-Walled Carbon Nanotube Probe Microscopy Tips, Chin Li Cheung, Jason H. Hafner, Teri W. Odom, Kyoungha Kim, Charles M. Lieber

Barry Chin Li Cheung Publications

Single-walled carbon nanotube (SWNT) probe microscopy tips were grown by a surface growth chemical vapor deposition method. Tips consisting of individual SWNTs (1.5–4 nm in diameter) and SWNT bundles (4–12 nm in diameter) have been prepared by design through variations in the catalyst and growth conditions. In addition to high-resolution imaging, these tips have been used to fabricate SWNT nanostructures by spatially controlled deposition of specific length segments of the nanotube tips.

Phage Therapy : An Alternative To Antibiotics, Maria A. Appeaning

Electronic Dissertations and Theses

Bacteria resistant to most or all available antibiotics are causing increasingly serious problems and raising widespread fears of returning to a pre-antibiotic era of untreatable infections and epidemics. Despite intensive work by drug companies, no new classes of antibiotics have been found in the last 30 years . There are hopes that the newfound ability to sequence entire microbial genomes and to determine the molecular bases of pathogenicity will open new avenues for treating infectious disease, but other approaches are also being sought with increasing fervor. One result is a renewed interest in the possibilities of bacteriophage (phage) therapy - …