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Articles 13171 - 13200 of 15534
Full-Text Articles in Entire DC Network
Synthesis And Characterization Of Platinum – Selenium Derivatives: X-Ray Structure Of Trans-Pt(Pet3)2(Seph)2, Martin D. Rudd, Sergey V. Lindeman
Synthesis And Characterization Of Platinum – Selenium Derivatives: X-Ray Structure Of Trans-Pt(Pet3)2(Seph)2, Martin D. Rudd, Sergey V. Lindeman
Chemistry Faculty Research and Publications
The crystal structure of trans-[((bis)triethylphosphine)(bis(phenylselenato))platinum (II)] has been determined by single crystal X-ray diffraction. Crystallization occurs in the triclinic space group P-1 (No. 2) with a = 8.9964(2) Å, b = 11.5103(2) Å, c = 14.9335(3) Å; α = 85.8750(10)°, β = 72.5350(10)°, γ = 68.4450(10)°. Details of the structure and spectroscopic results are presented and discussed and comparisons are made with related square planar platinum (II) structures.
Bioengineering Of Protein Nanotubes And Protein Nanomaterial Composites, Thilak Kumara Mudalige
Bioengineering Of Protein Nanotubes And Protein Nanomaterial Composites, Thilak Kumara Mudalige
Dissertations
Flagella of Mesophilic bacteria such as E. coli are extremely ordered structures consisting of self-assemblies of flagellin 11-mers resulting in protein nanotubes of 2--3 nm inner diameter, 23 nm outer diameter, several microns in length and 5.4 nm separation between 11-mer segments. They are as a result attractive scaffolds and templates for the generation of uniform nanotubes and ordered array of nanoparticles. In this study fusion protein of bacterial flagellin (Fli C) and core thioredoxin (Trx), pFliTrx was used as peptide display on bacterial flagella. This was accomplished in the current research by introducing various peptide loops such as cysteine, …
The High-Resolution Nmr Structure Of The R21a Spc-Sh3:P41 Complex: Understanding The Determinants Of Binding Affinity By Comparison With Abl-Sh3, Salvador Casares, Eiso Ab, Hendrik Eshuis, Obdulio Lopez-Mayorga, Nico A.J. Van Nuland, Francisco Conejero-Lara
The High-Resolution Nmr Structure Of The R21a Spc-Sh3:P41 Complex: Understanding The Determinants Of Binding Affinity By Comparison With Abl-Sh3, Salvador Casares, Eiso Ab, Hendrik Eshuis, Obdulio Lopez-Mayorga, Nico A.J. Van Nuland, Francisco Conejero-Lara
Department of Chemistry and Biochemistry Faculty Scholarship and Creative Works
Background. SH3 domains are small protein modules of 60-85 amino acids that bind to short proline-rich sequences with moderate-to-low affinity and specificity. Interactions with SH3 domains play a crucial role in regulation of many cellular processes (some are related to cancer and AIDS) and have thus been interesting targets in drug design. The decapeptide APSYSPPPPP (p41) binds with relatively high affinity to the SH3 domain of the Abl tyrosine kinase (Abl-SH3), while it has a 100 times lower affinity for the α-spectrin SH3 domain (Spc-SH3). Results. Here we present the high-resolution structure of the complex between the R21A mutant of …
Kinetic Studies Of 6-Halopurine Nucleoside In Snar Reactions; 6-(Azolyl, Alkylthio And Fluoro)-Purine Nucleosides As Substrates For Suzuki Reactions, Jiangqiong Liu
Theses and Dissertations
In chapter 1, we describe development of a mild and efficient method for SNAr iodination of 6-chloropurine 2'-deoxynucleosides and nucleosides. Our studies demonstrate that 6-iodopurine nucleosides are excellent substrates for certain transition metal-catalyzed cross-coupling reactions. In chapter 2, we describe synthesis of protected 6-fluoro, 6-chloro, 6-bromo and 6-sulfonylpurine nucleosides. Comparisons among 6-fluoro-, 6-chloro-, 6-bromo, 6-iodo and 6-sulfonylpurine nucleosides for SNAr reactions with various N, O and S nucleophiles were investigated. Our results demonstrate that the 6-fluoropurine nucleoside is the best substrate for SNAr reactions among the four 6-halopurine nucleosides with oxygen, sulfur and aliphatic amine nucleophiles, and also with an …
Dna-Templated Nanomaterials, Hector Alejandro Becerril-Garcia
Dna-Templated Nanomaterials, Hector Alejandro Becerril-Garcia
Theses and Dissertations
Nanomaterials display interesting physical and chemical properties depending on their shape, size and composition. Self assembly is an intriguing route to producing nanomaterials with controllable compositions and morphologies. DNA has been used to guide the self assembly of materials, resulting in: (1) metal nanowires; (2) metal or semiconductor nanorods; (3) carbon nanotubes; and (4) semiconductor, metal or biological nanoparticles. My work expands the range of DNA templated nanomaterials and develops novel ways of using DNA to pattern nanostructures on surfaces. I have performed the first synthesis of silver nanorods on single stranded DNA, an attractive material for localizing DNA coupled …
Investigation Of Novel Microseparation Techniques, Yansheng Liu
Investigation Of Novel Microseparation Techniques, Yansheng Liu
Theses and Dissertations
Ultrahigh pressure liquid chromatography (UHPLC) makes it possible to use very small particles (< 2 µm) as packing materials to provide high column efficiencies. Results from a careful comparison of small porous and nonporous particles show that when the particle size is small enough (< 2 µm), both porous and nonporous particles give excellent performance, and the differences in column efficiencies between porous and nonporous particles become insignificant. Columns packed with bare diamond particles could separate small molecules, especially polar molecules, however, severe tailing occurred for less polar compounds. The polybutadiene coated diamond particles gave greater retention and better separation of small molecules compared to bare particles, although no improvement in column efficiency was observed. Changes in surface bonding of thermally hydrogenated diamond particles was achieved by chemical modification using various organic peroxides with or without reagents containing long carbon chain functional groups. It appears that the alkyl groups were attached onto the diamond surface with limited coverage. LC experiments did not demonstrate good separation; however, changes in LC behavior were observed. A repetitive solvent programming approach was successfully applied to the analysis of a continuous sample stream in microbore LC. Each analysis cycle consisted of three steps: pseudo-injection, elution and rinse. In the pseudo-injection step, elution with a non- or poor-eluting solvent produced a concentrated sample plug due to on-column focusing. Factors influencing peak symmetry, resolution and analysis cycle length were investigated. Quantitative analysis of a continuous sample stream is possible under certain operating conditions. Electric field gradient focusing (EFGF) devices with distributed resistor substrates could focus proteins in the separation channel, however, the focused bands were not stable, and the repeatability was poor due to the formation of bubbles and pH gradient in the separation channel. Both fiber-based and porous glass capillary-based planar EFGF devices with changing cross-sectional area (CCSA) channels were constructed and evaluated with the aid of a home-made scanning laser-induced fluorescence detection system. The fiber-based CCSA EFGF devices gave poorer performance compared with glass capillary based devices. Porous glass capillary-based EFGF devices could focus single proteins and separate mixtures of two to three proteins.
Ua66 2007 Student Awards Ceremony, Wku Ogden College Of Science & Engineering
Ua66 2007 Student Awards Ceremony, Wku Ogden College Of Science & Engineering
WKU Administration Documents
Program recognizing Ogden College students with brief list of activities for each student.
Biophysical Characterization Of A Beta-Peptide Bundle: Comparison To Natural Proteins, E. James Petersson, Cody J. Craig, Douglas S. Daniels, Jade X. Qiu, Alanna S. Schepartz
Biophysical Characterization Of A Beta-Peptide Bundle: Comparison To Natural Proteins, E. James Petersson, Cody J. Craig, Douglas S. Daniels, Jade X. Qiu, Alanna S. Schepartz
Chemistry Faculty Publications
We recently described the high-resolution X-ray structure of a helical bundle composed of eight copies of the β-peptide Zwit-1F. Like many proteins in Nature, the Zwit-1F octamer contains parallel and antiparallel helices, extensive inter-helical electrostatic interactions, and a solvent-excluded hydrophobic core. Here we explore the stability of the Zwit-1F octamer using circular dichroism (CD) spectroscopy, analytical ultracentrifugation (AU), differential scanning calorimetry (DSC), and NMR. These studies demonstrate that the thermodynamic and kinetic properties of Zwit-1F closely resemble those of α-helical bundle proteins. Together these studies should provide a model for the design of β-peptide proteins with biological functions.
Chemistry & Biochemistry Newsletter, Department Of Chemistry & Biochemistry, South Dakota State University
Chemistry & Biochemistry Newsletter, Department Of Chemistry & Biochemistry, South Dakota State University
Chemistry & Biochemistry Newsletter: 2002-2015
Inside:
Page 2-3 A Semester Break in Antarctica
Page 4 Chemistry Student Receives Goldwater Scholarship; Recent Publications by the Department’s Faculty
Page 5 Hach Scientific Foundation provides two new scholarships; Recent Publications by the Department’s Faculty
Page 6 Chemistry Alum elected to National Academy of Sciences; Recent Funding by the Department Faculty
Page 7 2007 Lardy Lecture; Scholarships and Awards
Page 8 2007 Chemistry and Biochemistry Graduates
Classification Of Chemical Substances Using Particulate Representations Of Matter: An Analysis Of Student Thinking, Marilyne Stains, Vicente Talanquer
Classification Of Chemical Substances Using Particulate Representations Of Matter: An Analysis Of Student Thinking, Marilyne Stains, Vicente Talanquer
Department of Chemistry: Faculty Publications
We applied a mixed-method research design to investigate the patterns of reasoning used by novice undergraduate chemistry students to classify chemical substances as elements, compounds, or mixtures based on their particulate representations. We were interested in the identification of the representational features that students use to build a classification system, and in the characterization of the thinking processes that they follow to group substances in different classes. Students in our study used structural and chemical composition features to classify chemical substances into elements, compounds, and mixtures. Many of the students’ classification errors resulted from strong mental associations between concepts (e.g., …
Structural Studies Examining The Substrate Specificity Profiles Of Pc-Plcbc Protein Variants, Aaron P. Benfield, Nina Goodey, Lauren T. Phillips, Stephen F. Martin
Structural Studies Examining The Substrate Specificity Profiles Of Pc-Plcbc Protein Variants, Aaron P. Benfield, Nina Goodey, Lauren T. Phillips, Stephen F. Martin
Department of Chemistry and Biochemistry Faculty Scholarship and Creative Works
The phosphatidylcholine preferring phospholipase C from Bacillus cereus (PC-PLCBc) catalyzes the hydrolysis of phospholipids in the following order of preference: phosphatidylcholine (PC) > phosphatidylethanolamine (PE) > phosphatidylserine (PS). In previous work, mutagenic, kinetic, and crystallographic experiments suggested that varying the amino acids at the 4th, 56th, and 66th positions had a significant influence upon the substrate specificity profile of PC-PLCBc. Here, we report the crystal structures of the native form of several PC-PLCBc variants that exhibited altered substrate specificities for PC, PE, and PS at maximum resolutions of 1.90-2.05 Å. Comparing the structures of these variants to the structure of the wild-type …
Effect Of Structure And Stereochemistry On Cytotoxicity Of Ruthenium Polypyridyl Complexes, Arthi Krishnan
Effect Of Structure And Stereochemistry On Cytotoxicity Of Ruthenium Polypyridyl Complexes, Arthi Krishnan
Chemistry & Biochemistry Theses - Archive
Efforts to develop novel non-platinum, metal-based antitumor drugs have been pursued by many groups and ruthenium complexes have drawn a lot of attention as prospective transition metal-based antineoplastic agents. Recently, it was discovered that complex [(phen)2Ru(tatpp)Ru(phen)2]+4 shows biological activity both in vitro and in vivo. Expanding on this area of research, in depth cytotoxicity studies in human lung cancer cells and healthy cells were carried out in five different ruthenium(II) polypyridyl complexes as racemic mixtures and also their enantiopure forms. This study was carried out by performing MTT-cytotoxicity assays on non small cell lung cancer cells (NSCLC), H358 - Human …
Green Chemistry Using Bismuth Salts Bismuth (Iii) Iodide Catalyzed Deprotection Of Acetals And Ketals In H2o, Aaron D. Bailey '07
Green Chemistry Using Bismuth Salts Bismuth (Iii) Iodide Catalyzed Deprotection Of Acetals And Ketals In H2o, Aaron D. Bailey '07
Honors Projects
Since the Pollution Prevention Act was passed in 1990, synthetic organic chemists have focused on the use of environmentally friendly reagents. Often, many synthetic labs use metal catalysts (compounds containing Hg, Ni, Pb, & Sn) that are toxic to or have detrimental effects on the environment. Unlike many heavy metal compounds, bismuth and its compounds have been found to be relatively non-toxic and environmentally friendly. Due to poor shielding of the nucleus by the f electrons bismuth compounds have been shown to be efficient Lewis acid catalysts for many reactions.
The goal of this project to utilize bismuth compounds, specifically …
Development Of Scanning Electrochemical Microscopy For Studying Electron Transport In Lipid Monolayers And Gold Nanoparticle Films, Violeta Stoycheva
Development Of Scanning Electrochemical Microscopy For Studying Electron Transport In Lipid Monolayers And Gold Nanoparticle Films, Violeta Stoycheva
Masters Theses
The focus of this thesis is the scanning electrochemical microscopy (SECM) investigation of the electron transport in lipid monolayers and in films of gold nanoparticles. The quality and stability of lipid monolayers were characterized by various analytical techniques such as fluorescence microscopy and spectroscopy, contact angle, and electrochemistry using a monolayer modified electrode. In the SECM measurement, the monolayer electron transport was not detected. The microscopic monolayer quality turned out to be not suitable for studying the electron transport.
The conductivity of mono layer protected gold clusters (MPCs) with different core sizes (1-3 nm diameter) were investigated using SECM. These …
Transcriptional Regulation Of Glucose-6-Phosphate Dehydrogenase (G6pdh) By Glucose, Pramod U. Thekkat
Transcriptional Regulation Of Glucose-6-Phosphate Dehydrogenase (G6pdh) By Glucose, Pramod U. Thekkat
Masters Theses
In liver, insulin and glucose regulate the expression of important genes for lipid and carbohydrate homeostasis. Studies on the effects of glucose and insulin, including effects on cell signaling, are vital since deficiencies in glucose utilization in cells and/or insulin secretion contribute to conditions like obesity and diabetes. In liver, the pentose phosphate pathway is one of the primary pathways that can utilize the excess carbohydrate. Glucose-6-phosphate dehydrogenase (G6PDH) is an important rate limiting enzyme in this pathway. Our laboratory has shown that both insulin and glucose induce the expression of G6PDH, although the mechanism by which this transcriptional regulation …
Heterogeneous Formation Of Hono On Hno3 Pre-Conditioned Hydrophobic, Hydrophilic And Ionic Surfaces At Various Relative Humidities, Dustin S. Wier
Heterogeneous Formation Of Hono On Hno3 Pre-Conditioned Hydrophobic, Hydrophilic And Ionic Surfaces At Various Relative Humidities, Dustin S. Wier
Masters Theses
Nitric acid (HNO3) is a major sink for NOx (NO+NO2 ) and is known to be removed from the atmosphere as a result of wet and dry deposition where it is then deposited on various surfaces in the environment. As these surfaces are photolyzed HONO is produced which affects the overlying troposphere. This study examines the amount of HONO (Nitrous Acid) produced by the photolysis of adsorbed HNO3 as a function of changing relative humidity on hydrophobic, hydrophilic, and inorganic ionic salt surfaces. The amount of HONO produced was measured in long path cell using …
Global And Quantitative Gene Expression Analysis Of The Effects Of Drinking Water Exposure To Lead Acetate In Fisher 344 Male Rats Liver, Worlanyo Eric Gato
Global And Quantitative Gene Expression Analysis Of The Effects Of Drinking Water Exposure To Lead Acetate In Fisher 344 Male Rats Liver, Worlanyo Eric Gato
Dissertations
The primary objective of this research is to analyze global gene expression patterns occurring in Fisher 344 rat livers exposed to varying levels of lead and times. The hypotheses were that: (1) effects associated with Pb exposure are both dose and time dependent and (2) several genes will be over-expressed or repressed including transcripts associated with calcium signaling. Initially, the effects of Pb exposures upon morphometnc indices, liver and kidney tissue histology, Pb distribution, Pb interaction with other trace metals including Zn, Cu, Co, Fe, Ni and Ca were assessed. Results showed a significant accumulation of lead in blood, liver, …
The Role Of Phosducin-Like Protein As A Co-Chaperone With The Cytosolic Chaperonin Complex In Assembly Of The G Protein Βγ Subunit Dimer, Paul Jayson Ludtke
The Role Of Phosducin-Like Protein As A Co-Chaperone With The Cytosolic Chaperonin Complex In Assembly Of The G Protein Βγ Subunit Dimer, Paul Jayson Ludtke
Theses and Dissertations
Phosducin-like protein (PhLP) has been shown to interact with the cytosolic chaperonin containing TCP-1 (CCT), and the βγ subunit dimer of heterotrimeric G proteins (Gβγ). Here we provide details obtained from cryo-electron microscopic and biochemical studies on the structure of the complex between the cytosolic chaperonin CCT and PhLP. Binding of PhLP to CCT occurs through only one of the two chaperonin rings, making multiple contacts with CCT through both its N- and C-terminal domains. In addition, we show that PhLP acts as a co-chaperonin along with CCT in mediating the assembly of the G protein βγ subunit and that …
Size Dependence Of Static And Dynamic Magnetic Properties In Nanoscale Square Permalloy Antidot Arrays, Minghui Yu, Leszek M. Malkinski, Leonard Spinu, Weilie Zhou, Scott L. Whittenburg
Size Dependence Of Static And Dynamic Magnetic Properties In Nanoscale Square Permalloy Antidot Arrays, Minghui Yu, Leszek M. Malkinski, Leonard Spinu, Weilie Zhou, Scott L. Whittenburg
Chemistry and Biochemistry Faculty Publications
Permalloy antidot arrays with different square hole sizes ( , , and ) have been fabricated by means of electron-beam lithography and lift-off techniques. The smaller square hole size results in enhanced remanence and reduced coercivity in the antidot array. Multiple resonance modes were clearly observed for the magnetic field applied normal to the array plane, and double uniform resonance modes occurred when the field deviated more than 30° from the normal to the plane. Two distinct dipolar field patterns with different orientations and magnitudes split the uniform resonance into double resonance modes. The double resonance modes show uniaxial in-plane …
The Niemann-Pick Type C2 Protein Loads Isoglobotrihexosylceramide Onto Cd1d Molecules And Contributes To The Thymic Selection Of Nkt Cells, Paul B. Savage, Nicolas Schrantz, Yuval Sagiv, Yang Liu, Albert Bendelac, Luc Teyton
The Niemann-Pick Type C2 Protein Loads Isoglobotrihexosylceramide Onto Cd1d Molecules And Contributes To The Thymic Selection Of Nkt Cells, Paul B. Savage, Nicolas Schrantz, Yuval Sagiv, Yang Liu, Albert Bendelac, Luc Teyton
Faculty Publications
The Niemann-Pick type C2 (NPC2) protein is a small, soluble, lysosomal protein important for cholesterol and sphingolipid transport in the lysosome. The immunological phenotype of NPC2-deficient mice was limited to an impaired thymic selection of Valpha 14 natural killer T cells (NKT cells) and a subsequent reduction of NKT cells in the periphery. The remaining NKT cells failed to produce measurable quantities of interferon-gamma in vivo and in vitro after activation with alpha-galactosylceramide. In addition, thymocytes and splenocytes from NPC2-deficient mice were poor presenters of endogenous and exogenous lipids to CD1d-restricted Valpha 14 hybridoma cells. Importantly, we determined that similar …
Unraveling The Catalytic Mechanism Of Nitrile Hydratases, Sanghamitra Mitra, Richard C. Holz
Unraveling The Catalytic Mechanism Of Nitrile Hydratases, Sanghamitra Mitra, Richard C. Holz
Chemistry Faculty Research and Publications
To elucidate a detailed catalytic mechanism for nitrile hydratases (NHases), the pH and temperature dependence of the kinetic constants kcat and Km for the cobalt-type NHase from Pseudonocardia thermophila JCM 3095 (PtNHase) were examined. PtNHase was found to exhibit a bell-shaped curve for plots of relative activity versus pH at pH 3.2–11 and was found to display maximal activity between pH 7.2 and 7.8. Fits of these data provided pKES1 and pKES2 values of 5.9 ± 0.1 and 9.2 ± 0.1 (kcat′ = 130 ± 1 …
Pyridinium Bis-Retinoids: Extraction, Synthesis, And Folate Coupling, Mary Allison Alvarez
Pyridinium Bis-Retinoids: Extraction, Synthesis, And Folate Coupling, Mary Allison Alvarez
Theses and Dissertations
This thesis is divided into two parts.Part I describes the organic extraction, separation, and liquid chromatographic-mass spectrometric analysis of chromophores from human and bovine retinal pigment epithelium. Flurorophores in the retinal pigment epithelium have been implicated in age related macular degeneration. In addition, the synthesis and characterization of a number of bis-retinoid type compounds that may potentially be found in such extracts, or that may be used for insight into pyridinium bis-retinoid reactivity, was accomplished.Part II describes a study of pyridinium bis-retinoid-folic acid coupling with respect to linker type, linker length, and nature of the linkage. Folic acid has been …
Doping Golden Buckyballs: Cu@Au16- And Cu@Au17- Cluster Anions, Lei-Ming Wang, Satya S. Bulusu, Hua-Jin Zhai, Xiao Cheng Zeng, Wang
Doping Golden Buckyballs: Cu@Au16- And Cu@Au17- Cluster Anions, Lei-Ming Wang, Satya S. Bulusu, Hua-Jin Zhai, Xiao Cheng Zeng, Wang
Xiao Cheng Zeng Publications
The discovery of the unique catalytic effects of gold nanoparticles on oxide substrates[1] has stimulated a flurry of research into the structures and properties of free gold nanoclusters, which may hold the key to elucidating the catalytic mechanisms of supported gold clusters. One of the most remarkable results has been the discovery of planar gold cluster anions (Aun-) of up to twelve gold atoms and the 2D to 3D transition for clusters with n larger than 12.[2]– [4] Among larger gold clusters, Au20 has been found to be a perfect tetrahedron.[5] A more recent study of …
Pressure Dissociation Of Integration Host Factor-Dna Complexes Reveals Flexibility-Dependent Structural Variation At The Protein-Dna Interface, Donald F. Senear, Vira Tretyachenko-Ladokhina, Michael L. Opel, Kimberly A. Aeling, G. Wesley Hatfield, Laurie M. Franklin, Reuben C. Darlington, J. B. A. Ross
Pressure Dissociation Of Integration Host Factor-Dna Complexes Reveals Flexibility-Dependent Structural Variation At The Protein-Dna Interface, Donald F. Senear, Vira Tretyachenko-Ladokhina, Michael L. Opel, Kimberly A. Aeling, G. Wesley Hatfield, Laurie M. Franklin, Reuben C. Darlington, J. B. A. Ross
Chemistry and Biochemistry Faculty Publications
E. coli Integration host factor (IHF) condenses the bacterial nucleoid by wrapping DNA. Previously, we showed that DNA flexibility compensates for structural characteristics of the four consensus recognition elements associated with specific binding (Aeling et al., J. Biol. Chem. 281, 39236-39248, 2006). If elements are missing, high-affinity binding occurs only if DNA deformation energy is low. In contrast, if all elements are present, net binding energy is unaffected by deformation energy. We tested two hypotheses for this observation: in complexes containing all elements, (1) stiff DNA sequences are less bent upon binding IHF than flexible ones; or (2) DNA sequences …
Dynamic Polarizabilities Of Rare-Earth-Metal Atoms And Dispersion Coefficients For Their Interaction With Helium Atoms, Xi Chu, Alexander Dalgarno, Gerrit C. Groenenboom
Dynamic Polarizabilities Of Rare-Earth-Metal Atoms And Dispersion Coefficients For Their Interaction With Helium Atoms, Xi Chu, Alexander Dalgarno, Gerrit C. Groenenboom
Chemistry and Biochemistry Faculty Publications
The dynamic scalar and tensor polarizabilities of the rare-earth-metal atoms are calculated with time-dependent density functional theory. The frequency-dependent polarizabilities at imaginary frequencies are used to determine the isotropic and orientation-dependent van der Waals coefficients for the interactions of the rare-earth-metal atoms with helium atoms. The static polarizabilities are compared with other theoretical values and with experimental results. The agreement is satisfactory in most cases but there are some exceptions where the discrepancy between theory and experiment is significant. The derived isotropic van der Waals coefficients range between 37 and 50 E(H)a(0)(6) and the orientation-dependent coefficients between 2 and -1 …
Modification Of The Active Site Of Mycobacterium Tuberculosis Katg After Disruption Of The Met-Tyr-Trp Cross-Linked Adduct, Sofia M. Kapetanaki, Xiangbo Zhao, Shengwei Yu, Richard S. Magliozzo, Johannes Schelvis
Modification Of The Active Site Of Mycobacterium Tuberculosis Katg After Disruption Of The Met-Tyr-Trp Cross-Linked Adduct, Sofia M. Kapetanaki, Xiangbo Zhao, Shengwei Yu, Richard S. Magliozzo, Johannes Schelvis
Department of Chemistry and Biochemistry Faculty Scholarship and Creative Works
Mycobacterium tuberculosis catalase-peroxidase (Mtb KatG) is a bifunctional enzyme that possesses both catalase and peroxidase activities and is responsible for the activation of the antituberculosis drug isoniazid. Mtb KatG contains an unusual adduct in its distal heme-pocket that consists of the covalently linked Trp107, Tyr229, and Met255. The KatG(Y229F) mutant lacks this adduct and has decreased steady-state catalase activity and enhanced peroxidase activity. In order to test a potential structural role of the adduct that supports catalase activity, we have used resonance Raman spectroscopy to probe the local heme environment of KatG(Y229F). In comparison to wild-type KatG, resting KatG(Y229F) contains …
Supporting Information For "The Molecular Basis Of High-Altitude Adaptation In Deer Mice", Jay F. Storz, Stephen J. Sabatino, Federico G. Hoffmann, Eben J. Gering, Hideaki Moriyama, Nuno Ferrand, Bruno Monteiro, Michael W. Nachman
Supporting Information For "The Molecular Basis Of High-Altitude Adaptation In Deer Mice", Jay F. Storz, Stephen J. Sabatino, Federico G. Hoffmann, Eben J. Gering, Hideaki Moriyama, Nuno Ferrand, Bruno Monteiro, Michael W. Nachman
Hideaki Moriyama Publications
Figure S1: Variation in Site-Specific Levels of Altitudinal Differentiation across the 5′ α- Globin Gene of P. maniculatus
Figure S2: Relationship between Pairwise Linkage Disequilibrium and Distance in bp
Genbank Accession Numbers
Table S1: Amino Acid Variation in the α-Globin Genes of High- and Low-Altitude Deer Mice: Amino acid replacement polymorphisms in deer mice where the derived variant is present at a frequency of >0.100 in the high-altitude sample.
Table S2: Additional Information on Sequenced Loci: Primer sequences for nuclear loci in P. maniculatus.
The Molecular Basis Of High-Altitude Adaptation In Deer Mice, Jay F. Storz, Stephen J. Sabatino, Federico G. Hoffmann, Eben J. Gering, Hideaki Moriyama, Nuno Ferrand, Bruno Monteiro, Michael W. Nachman
The Molecular Basis Of High-Altitude Adaptation In Deer Mice, Jay F. Storz, Stephen J. Sabatino, Federico G. Hoffmann, Eben J. Gering, Hideaki Moriyama, Nuno Ferrand, Bruno Monteiro, Michael W. Nachman
Hideaki Moriyama Publications
Elucidating genetic mechanisms of adaptation is a goal of central importance in evolutionary biology, yet few empirical studies have succeeded in documenting causal links between molecular variation and organismal fitness in natural populations. Here we report a population genetic analysis of a two-locus a-globin polymorphism that underlies physiological adaptation to high-altitude hypoxia in natural populations of deer mice, Peromyscus maniculatus. This system provides a rare opportunity to examine the molecular underpinnings of fitness-related variation in protein function that can be related to a well-defined selection pressure. We surveyed DNA sequence variation in the duplicated α -globin genes of P. maniculatus …
A Coarse Grain Model For Dna, Thomas A. Knotts Iv, Nitin Rathore, David C. Schwartz, Juan J. De Pablo
A Coarse Grain Model For Dna, Thomas A. Knotts Iv, Nitin Rathore, David C. Schwartz, Juan J. De Pablo
Faculty Publications
Understanding the behavior of DNA at the molecular level is of considerable fundamental and engineering importance. While adequate representations of DNA exist at the atomic and continuum level, there is a relative lack of models capable of describing the behavior of DNA at mesoscopic length scales. We present a mesoscale model of DNA that reduces the complexity of a nucleotide to three interactions sites, one each for the phosphate, sugar, and base, thereby rendering the investigation of DNA up to a few microns in length computationally tractable. The charges on these sites are considered explicitly. The model is parametrized using …
Role Of Carbonate In The Cytotoxicity Of Carboplatin, Anthony J. Di Pasqua, Jerry Goodisman, Deborah J. Kerwood, Bonnie B. Toms, Ronald L. Dubowy
Role Of Carbonate In The Cytotoxicity Of Carboplatin, Anthony J. Di Pasqua, Jerry Goodisman, Deborah J. Kerwood, Bonnie B. Toms, Ronald L. Dubowy
Chemistry - All Scholarship
Carboplatin, [Pt(NH3)2(CBDCA-O,O')], 1, where CBDCA is cyclobutane-1,1-dicarboxylate, is used against ovarian, lung, and other types of cancer. We recently showed (Di Pasqua et al. (2006) Chem. Res. Toxicol. 19, 139-149) that carboplatin reacts with carbonate under conditions that simulate therapy to produce carbonato carboplatin, cis-[Pt(NH3)2(O-CBDCA)(CO3)]2-, 2. We use 13C and 1H NMR and UV-visible absorption spectroscopy to show that solutions containing carboplatin that have been aged in carbonate buffer under various conditions contain 1, 2, and other compounds. We then show that aging carboplatin in carbonate produces compounds that are more toxic to human neuroblastoma (SK-N-SH), proximal renal tubule (HK-2) …