Digital Commons Network^™

Investigating The Effects Of The Plasticizers Bisphenol A And Di (2-Ethylhexyl) Phthalate On Dopaminergic Neurons In A C. Elegans Parkinson's Disease, Amanda Valera

Undergraduate Honors Theses

Parkinson's disease (PD) is a neurodegenerative disorder characterized by loss of dopamine (DA) containing neurons in the substantia nigra of the brain. Though the cellular pathways that lead to PD are varied and not well understood, elevated levels of reactive oxygen species (ROS) and inhibition of the mitochondrial electron transport chain enzyme complex I have been associated with PD pathogenesis. Environmental factors such as the plasticizers bisphenol A (BPA) and di(2-ethylhexyl) phthalate (DEHP) may also be involved in PD pathogenesis. In this research, three strains of the nematode Caenorhabditis elegans (C. elegans), a wild-type N2 strain, a ROS-sensitive nnt …

Catalytic Activity Of Titania And Titania-Containing Nanomaterials: And, Spatial Distribution Of Silica Surface Groups Using A Tethered Amine Catalyst, Ramkumar Samala

Masters Theses

Titania and titania-containing nanomaterials are semiconductor photocatalysts and are widely used to degrade (i.e. oxidize) organic matter. The adsorption and catalytic properties of highly dispersed titania prepared using sulfate and pyrogenic methods, and fumed containing mixed oxides, were studied using catalytic decomposition of methylene blue primarily by kinetic methods. Commercial ultrafine titania (PC-100, PC-105 and PC-500), fumed Ti 02, and the mixed oxide of 80% Silica/20% Titania (ST20) were studied. Catalytic activity as measured by methylene blue decomposition kinetics was highest per gram for non-treated ultrafine titania PC- 500 which has the highest SsET and smallest particle size. However this …

Fourier Transform Mass Spectrometry For The Molecular Level Characterization Of Natural Organic Matter: Instrument Capabilities, Applications, And Limitations, Rachel L. Sleighter, Patrick G. Hatcher, Goran Nikolić (Ed.)

Chemistry & Biochemistry Faculty Publications

No abstract provided.

Characterization Of Heterogeneities And Domains In Aquatic And Sedimentary Organic Matter By 1 H Spin Diffusion: Potential For Elucidating The Formation Mechanisms, Jingdong Mao, Xiaoyan Cao

Chemistry & Biochemistry Faculty Publications

Although the information on domains and heterogeneities of natural organic matter (NOM) can provide insights into its formation mechanisms, the appropriate solid-state NMR technique for measuring them is still lacking. The traditional technique requires mobility differences in NOM whereas NOM components are primarily rigid. We introduced a new ¹H spin diffusion technique, ¹H-¹³C two-dimensional heteronuclear correlation (2D HETCOR) NMR with ¹H spin diffusion, for characterization of domains and heterogeneities in aquatic and sedimentary organic matter. It was achieved by collecting a series of 2D HETCOR spectra with a variable mixing time, t_m', and …

Synthesis And Biological Activity Of 5-Substituted-2-Amino-1,3,4-Oxadiazole Derivatives, Sanjeev Kumar

Turkish Journal of Chemistry

Electrical energy offers numerous benefits for performing synthesis, including increased reaction rates, enhanced yields, and cleaner chemistries. 5-Substituted-2-amino-1,3,4-oxadiazoles were synthesized directly from the semicarbazone at a platinum electrode under controlled potential electrolysis in an undivided cell assembly in acetonitrile. The compounds were screened for antibacterial and antifungal activity against Staphylococcus aureus, Klebsiella pneumoniae, Pellicularia salmonicolor, and Macrophomina phaseolina.

Polarographic Determination Of Anticancer Drug Vitamin K_3 With Direct And Indirect Methods/Application To Serum And K_3 Injection Solution, Ümmi̇han Taşkoparan Yilmaz, Güler Somer

Turkish Journal of Chemistry

In this work, direct and indirect methods for determination of vitamin K_3 were developed using differential pulse polarography. The reaction between sulfite and the quinone (Q) form of vitamin K_3 was used for indirect determination, since the sulfite peak at -0.7 V is sharp and very reproducible in 0.1 M HAc NaAc (pH = 5.5). It was found that at pH 4.5-5.5, this reaction was quantitative and very fast when the temperature was 45 °C. For its direct determination, on the other hand, vitamin K_3 was standardized by the indirect method using standard sulfite as the reducing agent. The calibration …

Synthesis And Anti-Helicobacter Pylori Activity Of (4-Nitro-1-Imidazolylmethyl)-1,2,4-Triazoles, 1,3,4-Thiadiazoles, And 1,3,4-Oxadiazoles, Asal Fallah-Tafti, Tahmineh Akbarzadeh, Parastoo Saniee, Farideh Siavoshi, Abbas Shafiee, Alireza Foroumadi

Turkish Journal of Chemistry

A series of [(4-nitro-1H-imidazol-1-yl)methyl]-1,2,4- triazoles and 1,3,4-thiadiazoles were prepared and evaluated for their activity against sensitive and resistant H. pylori strains. Study of the structure-activity relationship of these series of compounds indicated that the type of nitroimidazole moiety and the pendent group on the heteroaryl analog dramatically impact the anti-H. pylori activity. In triazole series, compound 5d, containing a 4-methyl phenyl group on the triazole ring, was the most potent compound tested against both metronidazole-sensitive and -resistant strains at a concentration of 8 \mu g.

E)--2--Acetyl--4--(4--Methoxyphenyldiazenyl) Phenol: X--Ray And Dft--Calculated Structure, Serap Yazici, Çi̇ğdem Albayrak, İsmai̇l Erdem Gümrükçüoğlu, İsmet Şenel, Orhan Büyükgüngör

Turkish Journal of Chemistry

The crystal structure of the title compound, (E)-2-acetyl-4-(4-methoxyphenyldiazenyl) phenol, displays a trans configuration of the azo moiety as found for other azo (diazene) derivatives. The aromatic mean planes are nearly coplanar and the dihedral angle between the 2 aromatic rings is 3.04(8)°. The molecules, with strong intramolecular O--H...O hydrogen bonding, are linked by weak van der Waals interactions in the 3-dimensional network. The molecular geometry, determined using X-ray diffraction techniques, was also calculated with the density functional theory (DFT), employing the hybrid exchange-correlation functional B3LYP. Experimental and theoretical IR spectra of the compound were also calculated for comparison. The results …

Qsar And Docking Studies Of Inhibition Activity Of 5,6-Dihydro 11-Alkylbenzo[\Alpha]Carbazole Derivatives Against Estrogen Receptor, Tuğba Taşkin, Fatma Sevi̇n

Turkish Journal of Chemistry

In the present study, QSAR and docking studies were applied to understand the nature of 5,6-dihydro 11-alkylbenzo[\alpha]carbazole derivatives and to investigate the interactions of homolog series with binding sites on selected a-chains of human estrogen receptors (hER). The best QSAR model was selected, having the correlation coefficient r = 0.924, squared correlation coefficient r^2 = 0.854, standard deviation s = 0.357, and cross-validated squared correlation coefficient Q^2 = 0.755. The QSAR model indicated that the descriptors E-HOMO and heat of formation play an important role in human estrogen receptor inhibitor activities. A docking study was also utilized to visualize the …

In Silico Design Of Novel And Highly Selective Lysine-Specific Histone Demethylase Inhibitors, Ebru Demet Akdoğan, Burak Erman, Kemal Yelekçi̇

Turkish Journal of Chemistry

Histone lysine-specific demethylase (LSD1) is involved in a wide range of epigenetic processes and plays important roles in gene silencing, DNA transcription, DNA replication, DNA repair, and heterochromatin formation. Its active site shows a resemblance to those of 2 homologous enzymes, monamine oxidase A and B (MAO-A and MAO-B.) In the present work, starting from suitable scaffolds and generating thousands of structures from them, 10 potential inhibitors were obtained with structural and physicochemical properties selectively suitable for inhibiting LSD1. iLib Diverse software was used to generate the diverse structures and 3 docking tools, CDOCKER, GOLD, and AutoDock, were used to …

Synthesis And Antimicrobial Activities Of Some Bridged Bis-Benzimidazole Derivatives, Hasan Küçükbay, Ülkü Yilmaz, Ni̇hat Şi̇reci̇, Ayşe Ni̇lay Güvenç

Turkish Journal of Chemistry

Some bis-benzimidazoles derivatives bearing allyl, crotyl, cinammyl, furfuryl, and thenyl groups were synthesized and their in vitro antimicrobial activity determined against gram-positive and gram-negative bacteria, and fungi by disk-diffusion method. The structures of all new compounds were identified by ^1H-NMR, ^{13}C-NMR, and FT-IR spectroscopic techniques and elemental analysis. All the compounds synthesized in this work were examined for their in vitro antimicrobial activities against gram-positive (Staphylococcus aureus and Bacillus megaterium) and gram-negative bacteria (Klebsiella pneumoniae and Escherichia coli), and the yeasts like fungi (Candida globrata and Candida tropicalis). Compared to the reference substances, Cefozine and nystatin, most of the compounds …

Constituents Of Plantago Major Subsp. Intermedia With Antioxidant And Anticholinesterase Capacities, Ufuk Kolak, Mehmet Boğa, Emi̇ne Akalin Uruşak, Ayhan Ulubelen

Turkish Journal of Chemistry

The methanol extract of Plantago major subsp. intermedia (Gilib.) Lange afforded 4 known compounds, namely isomartynoside (1), 10-hydroxymajoroside (2), \beta -sitosterol (3), and ursolic acid (4). Their structures were established by spectroscopic methods. After determination of the total phenolic and flavonoid contents of the methanol extract, the antioxidant potentials of the crude extract and isolated compounds 1-4 were determined by \beta -carotene bleaching, DPPH free radical and ABTS cation radical scavenging, and cupric reducing antioxidant capacity methods. The methanol extract, rich in phenolic contents, indicated the same DPPH free radical scavenging activity (72\% inhibition) as a standard compound, butylated hydroxytoluene, …

Preparation And Characterization Of A Series Of Thiourea Derivatives As Phase Change Materials For Thermal Energy Storage, Cemi̇l Alkan, Yusuf Tek, Derya Kahraman

Turkish Journal of Chemistry

A series of solid-liquid phase change materials, thiourea derivatives, were prepared via condensation of thiourea with the respective carboxyl chlorides (lauroyl chloride, myristoyl chloride, and palmitoyl chloride) and were then characterized by using FT-IR, ^1H-NMR, differential scanning calorimetry (DSC), and thermogravimetric (TG) analysis. The thiourea derivatives (1,3-didodecanoyl thiourea, 1,3-ditetradecanoyl thiourea, and 1,3-dihexadecanoyl thiourea) were structurally symmetric and had long alkyl groups to crystallize. Thermal analysis by DSC and spectroscopic investigation by FT-IR spectroscopy were performed on the samples before and after thermal cycling tests to determine thermal reliability. The maximum latent heats of melting and freezing of the thiourea derivatives …

Analysis Of Gaba And Glutamate In The Mouse Dorsal Striatum, Stella Wisidagamage

Wayne State University Theses

ABSTRACT

ANALYSIS OF GABA AND GLUTAMATE IN MICE BRAIN

by

STELLA WISIDAGAMA

May 2011

Advisor: Dr. Tiffany Mathews

Major: Chemistry (Analytical)

Degree: Master of Science

GABA and glutamate are the predominant inhibitory and excitatory amino acid neurotransmitters in the central nervous system (CNS), respectively. However, their altered levels cause several neurological diseases including Parkinson's and Huntington's disease, schizophrenia, and epilepsy. It is important to measure their levels in the extra- and intracellular environments to better understand and develop improved therapeutics that will treat these neurological disorders. The principle aim of this study is to study the impacts of different endogenous …

A Study Of Mo(4+)Quinoxalyl-Dithiolenes As Models For The Non-Innocent Pyranopterin In The Molybdenum Cofactor, Kelly G. Matz, Regina P. Mte, Rebecca Rothstein, Martin L. Kirk, Sharon J. Nieter Burgmayer

Chemistry Faculty Research and Scholarship

A model system for the molybdenum cofactor has been developed that illustrates the noninnocent behavior of an N-heterocycle appended to a dithiolene chelate on molybdenum. The pyranopterin of the molybdenum cofactor is modeled by a quinoxalyldithiolene ligand (S(2)BMOQO) formed from the reaction of molybdenum tetrasulfide and quinoxalylalkyne. The resulting complexes TEA[Tp*MoX(S(2)BMOQO)] [1, X = S; 3, X = O; TEA = tetraethylammonium; Tp* = hydrotris(3,5-dimethylpyrazolyl)borate] undergo a dehydration-driven intramolecular cyclization within quinoxalyldithiolene, forming Tp*MoX(pyrrolo-S(2)BMOQO) (2, X = S; 4, X = O). 4 can be oxidized by one electron to produce the molybdenum(5+) complex 5. In a preliminary report of …

Mechanisms Of Adsorption Of Copper And Silver Ions On Carbon Materials In An Open Circuit, Mikhail M. Goldin

Faculty Publications and Presentations

No abstract provided.

Effective Numbers Of Electrons As A Criterion Of Carbon Suitability As A Hemosorbent, Mogely Khubutiya, Boris Grafov, Mikhail M. Goldin, Alexei Davydov, Vladimir Kolesnikov, Mark Goldin

Faculty Publications and Presentations

The number of medical applications of electrochemistry has grown in recent years due to the increased applications of electrochemical concepts to various systems of the organism. This includes electrochemically controlled hemosorption detoxification, where the removal of toxicants is controlled by changing the potential of the hemosorbent. It is important to avoid Faradaic processes in the course of hemosorption, which can lead to the addition of electrochemically modified toxicants to blood. The probability of their occurrence should depend on the open-circuit potential of the activated carbon. In order to elucidate the identification of Faradaic reactions, a model system was investigated. The …

Supramolecular Organization Of Nanoparticles, Brenda M. Porta Linnell

Open Access Theses & Dissertations

The study of supramolecular structures with nano-architectures has become an active area of research in recent years. They have the potential to generate functional materials with applications in medicine and emerging technologies. In this dissertation, the supramolecular organization of gold nanoparticles (AuNP) and other nano-scale structures such as discrete styrene-based polymers was investigated. The synthesis and characterization of metal-mediated AuNPs systems using pendant ligands on the AuNP such as 11-diethylenetriamine-undecane-1-thiol, 11-Mercapto-undecanoic acid [2-(2-amino-ethylamino)-ethyl]-amide, Bis(11-oxo-nicotinic acid, undecine)disulfide, and 11-mercaptoundecanoic acid, and using Cu(II) to mediate the formation of supramolecular AuNP systems with sizes of 200 nm ¡V 3 fÃ?m, are …

Baseline Data Analysis Of The Throgren Basin Retrofit, Erin Argyilan, Jennifer Birchfield, Tom Goyne, Nicole Grabos, Caitlin Soley, Jennifer Wunsch

Symposium on Research and Creative Expression (SORCE)

The Thorgren Basin, located in Valparaiso, IN, was created as a component of the stormwater management system for the city. The basin’s primary function is to collect stormwater from two separate regions of the Salt Creek Watershed after large storm events, that is then discharged through a single outlet. In its current state the basin has limited infiltration capabilities due to a lack of vegetation and pervious surfaces. The Save the Dunes Conservation Fund, a local non-profit group, provided a cost share opportunity to naturalize Thorngren basin. The goal of the summer 2011 project was to create a monitoring strategy …

Preparation And Crystal Structures Of Chiral And Non-Chiral Mixed Ligand Copper Complexes Containing N-Methyl Imidazole And Various N-Phthaloylalanines, Hiral Patel

Theses, Dissertations and Culminating Projects

A quasiracemate is the cocrystallization of two similarly shaped but chemically distinct molecules of opposite handedness. There has been extensive work done in the field of organic quasiracemates by Dr. Kraig A. Wheeler. Limited work has been done in inorganic quasiracemates. The goal of this study was to prepare various metal based enantiomers, racemates, and quasiracemates using A-phthaloylalanines, and TV-methylimidazole as ligands bound to copper arranged in a centrosymmetric pattern. In this study, we developed a method to prepare A-phthaloylalanines and its copper complexes. Three complexes have yielded crystal structures: a racemate, bis(7V-methylimidazole) bis(D,L-3-chloro-7V-phthaloylalanato)copper(II); a quasiracemate, bis(A-methyhmidazole)(L-3-chloro-iV-phthaloylalanato)(D-3-methyl-7V-phthaloylalanato) copper(II); and an …

Distributions And Sources Of Hono In The Rural Troposphere, Ning Zhang

Legacy Theses & Dissertations (2009 - 2024)

Nitrous acid (HONO) is an important precursor of hydroxyl radical and plays an important role in the terrestrial boundary layer photochemistry. However, there are still many unknowns regarding HONO chemistry such as formation mechanisms and distributions in the troposphere, especially in rural and remote environments. In this research, we presented the first vertical concentration profiles of HONO in the troposphere, measured on a small aircraft platform. The HONO mixing ratios ranged from 4 to 17 pptv in the free troposphere and from 8 to 74 pptv in the rural boundary layer. The HONO distribution patterns were strongly correlated to the …

Single Cell Analysis For The Characterization Of Cell Populations Using A Live Cell Array, Maureen Ann Walling

Legacy Theses & Dissertations (2009 - 2024)

In the past decade, the shift from whole cell population analyses towards single cell measurement methods and techniques is based on experimental results that reveal significant levels of non-genetic heterogeneity in clonal cell populations. This heterogeneity manifests in multiple aspects of cell activity and is, in part, a result of stochastic noise in processes leading to gene expression, namely transcription and translation. The growing understanding of this occurrence has led to the development of methods to monitor and analyze heterogeneity for a more thorough description of cell populations and overall activity.

New Photoluminescent Copper(I) Complexes : Impact Of Bridging Carboxylates On Solid-State Structures And Photophysical Properties, Oleksandr Hietsoi

Legacy Theses & Dissertations (2009 - 2024)

Polynuclear copper(I) carboxylates exhibiting rich luminescent properties and a remarkable structural diversity have been the main focus of this investigation. In spite of the well-developed methods of copper(I) carboxylates synthesis, only a handful of complexes have been crystallographically characterized prior to our work. Notably, they all demonstrate different structural arrangements in the solid state. This dissertation describes the work that has been carried out towards the synthesis of new copper(I) carboxylates, the study of their molecular and solid-state structures, and their solid-state photoluminescent (PL) properties. In this work, we have prepared a series of new copper(I) carboxylates of the general …

Structural Interactions And Dynamics Of Disease Related Proteins By Using Nmr Spectroscopy, Shadakshara Swamy Puttamadappa

Legacy Theses & Dissertations (2009 - 2024)

Nuclear Magnetic Resonance (NMR) is a powerful spectroscopic technique to study the structure, molecular interactions, and dynamics of proteins. Modern NMR instrumentation, advancements in experimental techniques and revolutionary developments in recombinant DNA technology have made NMR a versatile and very convenient tool for biomolecule characterization.

In-Cell And In Vitro Studies Of Disease Related Protein-Protein Interactions Using Nmr-Spectroscopy, Andres Yudiel Maldonado

Legacy Theses & Dissertations (2009 - 2024)

The receptor for advanced glycation end products (RAGE) is a multiligand cell surface macromolecule that plays a central role in the etiology of diabetes, inflammation, and neurodegeneration. The cytoplasmic domain of RAGE, ctRAGE, is critical for RAGE-dependent signal transduction. As the most membrane proximal event, mDia1 binds to ctRAGE and is essential for RAGE ligand-stimulated phosphorylation of AKT and cell proliferation/migration. We show that ctRAGE contains an unusual alpha-turn that mediates the mDia1-ctRAGE interaction and is required for RAGE dependent signaling. The results establish a novel mechanism through which an extracellular signal initiated by RAGE ligands regulates RAGE signaling in …

A Biophysical Study Of Small Molecule-Nucleic Acid Interactions, Rajiv Thapa

Legacy Theses & Dissertations (2009 - 2024)

Nucleic acids are the biomolecules that encodes all the genetic information necessary for cellular metabolism. Binding of small molecules to DNA or RNA can alter their structures; perturb their functions as well as interactions with proteins and other ligands. This thesis focuses on the biophysical study of the interactions of three planar compounds with TAR 32 DNA (32 ntds DNA in HIV-1 LTR, Figure. The purpose for this study is to understand the binding modes of some of the potential drug target compounds, which will be useful for future rational drug design strategies.

Advanced Statistical Methods For Biochemical And Forensic Applications Of Raman Spectroscopy, Vitali Sikirzhytski

Legacy Theses & Dissertations (2009 - 2024)

This work is dedicated to the development and application of advanced statistical methods for biochemical and forensic applications of Raman spectroscopy. We developed a new concept of multidimensional Raman signatures for forensic identification of body fluid traces, which was successfully applied to the study of dried blood, semen, saliva, sweat and vaginal fluid stains. Several alternative advanced chemometric techniques were also successfully tested for the problems of pure body fluids discrimination and mixture analysis. Studies of body fluid mixtures with low blood and semen concentrations indicated that the detection limit of a minor contributor was as low as a few …

Synthesis And Characterization Of Diallylic Polysulfanes And Study Toward The Synthesis Of Thiarubrine E, Kai Wang

Legacy Theses & Dissertations (2009 - 2024)

Garlic oil contains diallyl polysulfanes as major components, which have been used as environmentally benign bird repellants and nematicides. While previous studies found that the biological activity of polysulfanes increases with numbers of sulfur atoms, higher diallyl polysulfanes are currently unavailable. A simple approach was developed, using liquid sulfur as a reagent, to the synthesis of diallyl polysulfanes containing chains of more than 20 sulfur atoms. This method was successfully applied to other diallylic disulfides and to garlic oil to give new families of polysulfanes. Some diallyl polysulfanes were isolated in a pure form by preparative high performance liquid chromatography …

Homologous And Heterologous Crystallin Protein Interactions As The Molecular Basis Of Inherited Cataract, Priya Ranjan Banerjee

Legacy Theses & Dissertations (2009 - 2024)

Age-related cataract is the most common cause of blindness worldwide. Nearly fifty percent of Americans above the age of 75 are diagnosed with this disease (http://www.nei.nih.gov/eyedata/pbd_tables.asp), and surgical intervention is the sole method of treatment at present (http://www.nei.nih.gov/healthyvision/objective/cataracts.asp). In the developing world, even this treatment is not readily available. These are compelling reasons to search for better treatments to delay, prevent or arrest cataract formation. Recent evidence suggests that age-related cataracts also have a genetic component. Therefore, determining the mechanisms underlying genetic cataracts with a known association to a protein-mutation is one important strategy towards understanding the molecular basis for …

Biophysical Investigations Of The Molecular Basis Of Cataract Associated With The R76s Mutation In Human Gammad-Crystallin, Vurghun Ahmadov

Legacy Theses & Dissertations (2009 - 2024)

Cataract disease results when the eye lens becomes opaque and scatters a significant part of the incoming light into the eye. The lens contains very high concentrations of the lens proteins, called crystallins, which are present at concentrations comparable to those found in protein crystals (about 400-600 mg/mL). Chemical modifications of the crystallins, such as oxidation and deamidation, or genetic mutations are known to result in increased light-scattering in vitro, and are implicated in cataract formation in vivo. Here we present the in vitro work on a mutant protein of human gammaD crystallin (HGD), namely R76S (i.e. Arg 76 to …