Digital Commons Network^™

Measuring The Properties Of Rod-Shaped Bacteria By Single-Entity Electrochemistry, Ashley Tubbs

Theses and Dissertations

Antibiotic-resistant bacteria pose a significant and escalating threat to hospitals around the world, necessitating the development of rapid and sensitive detection methods. Single-entity electrochemistry has emerged as a promising approach for detecting and identifying such bacteria, and monitoring the efficacy of antibiotics in real-time. Herein, we employ the translational diffusion equation for circular cylinders to predict the collision frequency of rod-shaped bacteria, informing our experimental setup. Our work demonstrates that lab-fabricated Pt ultramicroelectrodes can sensitively detect bacteria at femtomolar concentrations under migration-controlled conditions. Further, we present a method implemented in MatLab to automate the analysis of step-like signals observed in …

Asymmetric Cuh-Catalyzed Reductive Coupling Of Allenamides With Carbonyl And Imine Electrophiles, Stephen Collins

Theses and Dissertations

The carbon scaffold of many drugs and natural products contain multiple stereogenic centers bearing heteroatoms. As a result of this, chemists have long sought methods to efficiently install these multi-heteroatom functionalities. Reductive coupling reactions have been extensively studied over the past decades, and the allylation of carbonyls via the reductive coupling approach has been a key method for generating chiral allylic alcohols. This work utilizes inexpensive Cu for the asymmetric reductive coupling of allenamides with carbonyls or imines to simultaneously install two heteroatoms (either oxygen and nitrogen or nitrogen and nitrogen, respectively) onto the product. These molecules have a polarity …

Scattering Of Larger Molecules – Part 1: General Discussion, Dmitri Babikov

Chemistry Faculty Research and Publications

No abstract provided.

Inhaling The Unseen: Exploring The Presence Of Microplastics In The Human Respiratory Tract, Kara Coffman-Rea

Graduate Research Theses & Dissertations

Microplastics (plastic pieces less than 5 mm) have emerged as a pervasive form of pollution acknowledged as a universal threat to both environmental and human health. Their small size and widespread distribution pose significant risks to marine life, terrestrial ecosystems, and ultimately human health. Microplastics have been reported in food and drink items designated for human consumption, in cosmetics and consumer goods designed for human use, and within the air we breathe, each providing an entry route for microplastics to enter the human body. Recently, microplastic particles have been detected in a variety of human tissue samples (e.g., lung tissue). …

Addressing The Effects Of Counterion Size On The Properties Of Electrochemically Doped Conjugated Polymers, Kyle Baustert

Theses and Dissertations--Chemistry

Conjugated polymers (CPs) are an emerging class of materials that are attractive for many applications due to their low cost, flexibility, and ease of processing. Both chemical and electrochemical doping of CPs is done to alter important properties such as their electrical conductivities and optical absorbances. This ability to tune their properties allows for their use in devices such as organic electrochemical transistors (OECTs) for biosensing and bioelectronics, electrochromic devices for color changing windows, as well as wearable thermoelectrics to use body heat to power wearable electronics. There are several factors that can influence the properties of doped CPs including …

Single-Atom Catalysts For Electrochemical Energy Conversion: Copper Single-Atom Catalyst For Oxygen Reduction Reaction And Quantification Of Site Density By Co Stripping Voltammetry, Dawatage Perera

Theses and Dissertations--Chemistry

Fuel cells are considered a promising technology for achieving cleaner and more sustainable energy production and utilization. However, one of the current major challenges is the economic viability associated with the extensive use of Pt group metal (PGM) catalysts, particularly on the cathode side. Therefore, non-PGM single-atom catalysts (SACs) have received considerable attention as alternatives for PGM catalysts in the oxygen reduction reaction (ORR), which occurs at the cathode of the fuel cell. Among various SAC structures, the non-PGM/nitrogen-doped carbon-based structure (M-N-C) stands out for its excellent ORR performance.

Chapter 2 illustrates the use of copper metal in place of …

Effect Of Π-Conjugated Ligands And A* Site Organic Cations On The Energetic Properties And Photovoltaic Performance Of Metal Halide Perovskites, Harindi R. Atapattu

Theses and Dissertations--Chemistry

Metal halide perovskites have gained interest in optoelectronic applications such as photovoltaics, lasers, LEDs, transistors, and photodetectors due to their excellent semiconducting properties considering their low cost. Metal halide perovskite (HP) photovoltaics have rapidly increased in power conversion efficiency (PCE), which now exceeds 25%. HPs have gained attention in these applications due to their high tolerance towards defects, long charge carrier diffusion lengths, high charge carrier mobility, high optical absorption, and bandgaps that are tunable over a large range. Even though HP photovoltaic PCEs are improved these are still not commercially available due to them showing lower stability and energy …

Understanding Of Processing Additives Influence In Tin Halide Perovskites: Chemistry, Defect, And Photovoltaic Performance, Syed Rahmath Ullah Joy

Theses and Dissertations--Chemistry

Metal halide perovskite semiconductors have attracted much interest for various applications, such as solar cells, light emitting diodes, photodetectors, and lasers, due to their excellent optoelectronic properties. Photovoltaic cell development is centered on Pb-based perovskites, which have equal photovoltaic performance compared to the traditional silicon photovoltaic. But concerns arising from the usage of toxic lead metal have motivated the research community to seek an alternative derivative. Among those, tin halide perovskites show much promise as an alternative to Pb-counterparts due to their ideal bandgap for single junction photovoltaics and similar optoelectronic properties to Pb perovskites. Nevertheless, tin perovskites suffer from …

Synthetic Strategies Toward The Development Of Stable Gold-Based Anticancer Agents And Their Mechanistic Insight, Adedamola Arojojoye

Theses and Dissertations--Chemistry

Despite notable advancements in the design and synthesis of novel chemotherapeutic drugs, cancer continues to be a leading cause of death in the United States. Metallodrugs, especially Au complexes, have played a prominent role in the search for the next generation of chemotherapeutic agents. Herein, I report on the synthetic strategies towards the rational design of stable Au (Au)-based agents, study their reactivity in biological environment, and offer insights into the cytotoxic mechanism of action in cancer. Chemotherapeutic Au compounds exist mainly in +I or +III oxidation states. Repurposing of the Au(I) FDA approved auranofin for the treatment of diseases …

Synthesis, Functionalization, And Application Of Polymeric Membrane Blends Of Polysulfone, Poly-Ether Ether-Ketone, And Natural Fiber Additive Biochar For Optimal Water Treatment., Abelline Katusiime Fionah

Theses and Dissertations--Chemistry

According to the Center for disease control (CDC), an estimated 1.7 to 2.2 million persons die from waterborne diseases annually. The majority of individuals dying from diseases resulting from unsafe drinking water, such as diarrhea and gastroenteritis, are children. This has in turn created a global water crisis. Different methods have been developed to treat contaminated water in response to the global water crisis such as adsorption, filtration, ozonolysis, catalysis, etc. Of the methods available, filtration via polymeric membranes has been one of the most successfully applied. A membrane is a thin semi-permeable barrier (often made of a polymer) used …

Applying Synchrotron Saxs And Xas To Study The Microstructure Of Energy Conversion And Storage Materials, Lingzhe Fang

Graduate Research Theses & Dissertations

The microstructure of energy conversion and storage materials is a key determinant of physical properties and electrochemical performance. Synchrotron X-ray techniques, with their strengths of high flux and exceptional brightness, play an irreplaceable role in understanding nano and sub-nano structures. This helps the study of reaction mechanisms and benefits material design in energy conversion and storage area. Electrifying CO2 transformation using renewable energy offers a carbon-neutral solution to CO2 recycling and fuel generation. Among various feedstocks from the CO2 reduction reaction, CO, HCOOH, and CH4 have approached the performance thresholds for industry implementation. The application of single atom catalysts (SACs) …

Gas-Phase Mass Spectrometry Studies Of Ternary Metal Carboxylate Complexes, Anthony James Fanizza

Graduate Research Theses & Dissertations

In the wake of climate change from rising CO2 emissions and with peak oil looming, the dive into sustainable fuels and energy is becoming increasingly essential. This dissertation investigates ternary ligand-metal cationic complexes for potential catalytic applications in the decarboxylation of carboxylic acids to produce bioavailable and carbon-neutral fuel sources. By utilizing gas-phase reactivity studies via mass spectrometry, namely, collision-induced dissociation and ion-molecule reactions, mechanisms can be elucidated in a regulated chemical environment. When paired with density functional theory calculations for molecular geometries, chemical interactions, charge densities, and energetics, system efficiencies can be further clarified presenting a more complete mechanistic …

Pathology And Diagnosis In Inflammatory-Related Diseases: Covid-19 And Age-Related Macular Degeneration, Zane Russell Lacasse

Graduate Research Theses & Dissertations

Chronic inflammation and dysfunctional inflammatory responses are believed to be contributing factors to the severity of many diseases. Since the emergence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), it has been recognized that levels of inflammatory markers and the severity of coronavirus disease-2019 (COVID-19) cases are closely related. The work within this dissertation begins with establishing an alternative platform for the diagnosis of COVID-19 and explores ways to enhance the diagnostic utility of this platform. An alternative route for COVID-19 diagnosis was explored using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-ToF MS). The platform utilizes a non-invasive sampling technique …

Dna I-Motifs: Biophysical Characterization And Structure-Property Correlation As Foundation For Functional Material Design, Alexander Minasyan

Graduate Research Theses & Dissertations

Over the past decades, nucleic acids have emerged as crucial frameworks with significance in biological systems and functional material engineering. Cytosine-rich deoxyribonucleotide sequences can form quadruplex structures a.k.a. i-motifs. Recently, i-motifs have attracted scientific interest in biological and material design areas.

In this work, we systematically investigate an effect of structured and unstructured modifications such as hairpins, stems, loops and overhangs on the kinetic and thermodynamic properties of DNA i-motifs. We demonstrate that the modifications can influence i-motif’s stability and folding/unfolding rates: thus, double stranded stems and hairpins are the best at stabilizing i-motifs and increasing kinetic rates of folding. …

Studies Towards Mechanistic Understanding Of The Suzuki-Miyaura Catalyst-Transfer Polymerization, Mitchell Tyler Howell

Graduate Research Theses & Dissertations

Semiconducting organic conjugated polymers show major promise for the manufacturing of organic electronic and optoelectronic devices. Their utility comes from inherent conductivity, elasticity, processability and low weight paving the way towards novel materials and applications. The molecular weight, polydispersity, and precise incorporation of structural elements into the conjugated backbone are among the important parameters that affect a conjugated polymer’s mechanical and electrical properties. Therefore, precise control over such parameters provides a path for electronic materials with tunable properties tailored for a specific application. Recent success in this endeavor has been achieved with Suzuki-Miyaura Catalyst-Transfer Polymerization (SCTP) which is a transition …

Synthesis Of A Basket-Shaped Host Molecule Based On P-Tert-Butylcalix[4]Arene Featuring Pyridinyl Groups For Volatile Guest Molecule, Boluwatife S. Ajewole

Masters Theses

Supramolecular and Molecular chemistry offer an expanding array of applications for the development of smart devices, with calixarene-based molecular baskets playing a pivotal role in host-guest chemistry. A key concept in this field is the design of "smart" molecules with gate-like features, which can selectively transport chemical or biochemical species that are volatile, reactive, or sensitive to typical solution environments. These molecular hosts are engineered with predefined groups that respond to external stimuli, such as changes in concentration, temperature, or pH.

Molecular baskets are synthetic host molecules designed to capture guest molecules selectively through adjustable gates. In our study, we …

Stability Of Organic Metal Halide Perovskites, S S M Tareq Hossain

Theses and Dissertations--Chemistry

Perovskites have emerged as a promising candidate for low-cost production of solar cells. However, the most critical barrier for commercialization of perovskite solar cells (PSCs) is the inadequate stability of the organic metal halide perovskites (OMHPs). The degradation of OMHPs is induced by light, heat, air, and electrical bias. The known degradation pathways involve the oxidation of I- and Sn2+, dissolution of perovskites by moisture, irreversible reactions with water, ion migration, and ion segregation. To improve the stability of OMHPs various methods are adopted, such as additive engineering, perovskite surface treatment, and composition engineering. Surface ligands are used on top …

Fundamental Studies Of Optical Properties And Electrocatalytic Properties Of Low Dimensional Nanomaterials Carbon Nano Dots And 2d Transition Metal Dichalcogenides, Nadeesha Kothalawala

Theses and Dissertations--Chemistry

Low dimensional nanomaterials are widely used in a variety of applications such as opto-electronics, energy production and storage, and bio-medical applications due to their unique optical, catalytic, electronic, and mechanical properties. Most of the nanomaterials offer a plethora of modifications in their structure, composition, morphology, and dimensionality that can lead to the manipulation of their physiochemical properties. This dissertation presents insight into two types of compelling nanomaterials: carbon nanodots (CND) and transition metal dichalcogenides (TMD), investigating their optical and electrocatalytic properties respectively.

Carbon nanodots (CND) are a promising class of photoluminescent nanomaterials that hold a significant potential in many optoelectronic …

Investigating The Behavior Of Redox–Active Organic Molecules In Electrochemical Energy Storage Through Experiment–Guided Computational Simulations, Anton Perera

Theses and Dissertations--Chemistry

The long–anticipated implementation of using renewable sources such as solar and wind to meet the world’s energy demand is still limited by not having appropriate grid–level energy storage systems on a global scale. When considering grid–scale energy storage solutions, environmental concerns, and techno–economic viability play a crucial role in the practical implementation of such technology. To address this, redox–active organic molecules (ROMs) have been explored for many uses including serving as redox–active molecules in redox flow batteries (RFBs) and providing overcharge protection in lithium–ion batteries (LIBs).

Nevertheless, in order to be a major player in electrochemical energy storage, further optimization …

Impacts Of Key Degradation Byproducts On Amine Scrubbing For Post-Combustion Carbon Capture, Thomas Jorgensen

Theses and Dissertations--Chemistry

The increasing atmospheric CO₂ concentration causes significant concern about global warming and its environmental impact. Industrial sectors, including power generation, transportation, and production factories, contribute most of the anthropogenic sources of CO₂ emissions. Researchers search for methods to mitigate these CO₂ emissions without compromising the benefits of industrial processes, including CO₂ capture, utilization, and sequestration (CCUS). Post-combustion carbon capture (PCCC) by amine scrubbing is the most technology ready CCUS, with various pilot-scale projects worldwide showing small-scale to fully operational plants. While researchers have made significant progress in amine scrubbing, they strive to improve the efficiency and …

Addition Reactions Of Olefinic Heterocycles And 4-Hydroxycoumarins, Benjamin Goka

Graduate Research Theses & Dissertations

The work outlined in this dissertation describes acid-base catalyzed projects facilitating the construction of key synthetic analogs with vast therapeutic applications. Three major projects have been covered demonstrating various synthetic routes developed by our research group to furnish key derivatives of heterocyclic compounds, including coumarins, carbohydrate moieties, and beta-lactams. By their catalytic nature, acids, and bases are known to enhance the reactivities of compounds. This allows synthetic chemists to design or chart new and better reaction pathways leading to the delivery of desired reaction products. The first chapter features a summary of the main concepts underpinning the projects.

Chapter 2 …

Superelectrophile Promoted Syntheses Of Aromatic Spirocycles, Jeffrey Caz Ferreira

Graduate Research Theses & Dissertations

Aromatic spirocycles are crucial organic scaffolds that are at the forefront of innovation in various fields of organic electronics, as well as in drug design. The synthesis of these compounds is challenging, especially on an industrial scale and often have suboptimal yields in many traditional syntheses. New synthetic methodologies are being continually explored for the installation of sp3 hydridized spiro junctions. Our research group, as well as other groups, have done exploration of using superelectrophilic synthetic routes that are nicely applied to the formation of aromatic spirocycles. Most relevant to the results discussed in this dissertation are condensation chemistry using …

Phosphorescent Carbon Dots Doped Silica Nanomaterials Via Microwave-Assisted And Modified Stöber Methods For Anti-Counterfeiting And Biosensing, Weichao Liu

Dissertations and Theses

Phosphorescent materials are essential in bioimaging, anti-counterfeiting, and other applications due to their prolonged light emission. However, current phosphorescent materials face challenges such as complex synthesis, high costs, and instability. Carbon dots (CDs), with size less than 10 nm, are a promising alternative due to their biocompatibility, tunable optical properties, and simple synthesis. This thesis explores the synthesis of CDs using ethylenediamine (EDA) and phosphoric acid via a microwave-assisted method, followed by silica encapsulation using a modified Stöber process to form CDs@SiO2, aiming to enhance their stability and optical properties. Optical characterization showed a slight blue shift in the excitation …

Recovering Relativistic Effects In Electronic Structure Calculations Of F-Element Single Molecule Magnets, Nathan Roy Loutsch

Dissertations and Theses

There has been a great interest in developing new information technologies. Single molecule magnets (SMMs) are emerging as materials for high density data storage, qubits, and molecular spintronics. SMMs containing lanthanide or actinide centers are of interest due to their potentially high magnetic anisotropy. This would enable the use of SMMs at higher temperatures. Accurately modelling the electronic structure of f-element complexes can be quite challenging. Density Functional Theory (DFT) is a popular choice for optimizing geometry and studying the electronic structure due to its relatively low cost. In certain cases, more accuracy is desired or necessary to predict experimental …

Fluorinated Thiophene Containing Aromatics And Their Polymers For Energy Storage And Semiconductor Applications, Blessing Damilola Ishola

Dissertations and Theses

The development of new fluorinated functional materials that are moisture and air-stable is crucial for the efficient production of n-type organic semiconductors. These semiconductors are integral components in electronic devices such as transistors, diodes, organic semiconductors, organic field-effect transistors, and organic light-emitting diodes. Organic materials have become increasingly popular for designing new semiconductors due to their flexibility compared to inorganic alternatives. By molecularly engineering the band gap and electron delocalization, we can improve the efficiency and performance of semiconductor devices. We design, synthesize, and characterize a new type of donor-acceptor molecule based on the structure-property relationship learned from the literature …

Designing Fluorescent Moscs For Potential Applications In Illicit Drugs Detection, Robyn Nicole Cook

Dissertations and Theses

Illicit and hazardous substances pose a serious effect on the human body which can create longer-term issues on the mental and physical health which potentially lead to fatalities. Current methods for detecting illicit substances include analytical techniques like mass spectrometry (MS) and gas/liquid chromatography (GC/LC) which are known for accuracy and sensitivity. However, these instruments are bulky, costly, time-consuming, and require highly trained personnel. An alternative approach to overcoming these limitations is to employ nanostructured molecule-based chemical sensing technologies that are user-friendly, portable, and cost-effective with the sensitivity for detecting illicit substances. One such candidate is metal-organic super-containers (MOSCs), which …

Mixed Quantum/Classical Theory For Rotationally Inelastic Scattering Of Identical Collision Partners: Revised, Dulat Bostan, Bikramaditya Mandal, Dmitri Babikov

Chemistry Faculty Research and Publications

Mixed quantum/classical theory (MQCT) for the treatment of rotationally inelastic transitions during collisions of two identical molecules, described either as indistinguishable or distinguishable partners, is reviewed. The treatment of two molecules as indistinguishable includes symmetrization of rotational wavefunctions, introduces exchange parity, and leads to state-to-state transition matrix elements different from those in the straightforward treatment of molecules as distinguishable. Moreover, the treatment of collision partners as indistinguishable is eight times faster. Numerical results presented herein for H₂ + H₂, CO + CO and H₂O + H₂O systems indicate good agreement of MQCT calculations …

Scattering In Extreme Environments: General Discussion, Dmitri Babikov

Chemistry Faculty Research and Publications

No abstract provided.

Scattering At Condensed-Phase Surfaces: General Discussion, Dmitri Babikov

Chemistry Faculty Research and Publications

No abstract provided.

Anticancer Drugs Of Lysine Specific Histone Demethylase-1 (Lsd1) Display Variable Inhibition On Nucleosome Substrates, Dulmi Senanayaka, Danyun Zeng, Emre Deniz, Indunil K. Priyankara, Joceline Helmbreck, Owen Schneider, Aashay Mardikar, Aykut Uren, Nicholas J. Reiter

Chemistry Faculty Research and Publications

Lysine specific demethylase-1 (LSD1) serves as a regulator of transcription and represents a promising epigenetic target for anticancer treatment. LSD1 inhibitors are in clinical trials for the treatment of Ewing’s sarcoma (EWS), acute myeloid leukemia, and small cell lung cancer, and the development of robust inhibitors requires accurate methods for probing demethylation, potency, and selectivity. Here, the inhibition kinetics on the H3K4me2 peptide and nucleosome substrates was examined, comparing the rates of demethylation in the presence of reversible [CC-90011 (PD) and SP-2577 (SD)] and irreversible [ORY-1001 (ID) and tranylcypromine (TCP)] inhibitors. Inhibitors were also subject to viability studies in three …