Fillet Weight Comparison For Bluegill, Black Crappie, And Yellow Perch, Mikenna A. Pattrin

Journal of Earth and Life Science

Panfish, including bluegill Lepomis macrochirus, black crappie Pomoxis nigromaculatus, and yellow perch Perca flavescens are three sought-after species. Anglers often perceive a change in regulations as an attempt at limiting the amount of harvest. However, the goal of many regulation proposals is to increase the size structure of panfish, allowing anglers to achieve their ideal harvest with less fish. The primary objective of this study was to assess the relationship between panfish fillet weight and total length to estimate how many fillets would be needed to reach a harvest weight of 0.5 lbs. The secondary objective was to …

Specific Measurements Of A Yellow Perch Head Compared To The Total Length, Alex Timm

Journal of Earth and Life Science

Yellow Perch Perca flavescens is a popular fish for harvesting in Minnesota. Because of this the Minnesota Department of Natural Resources survey populations with gill nets, however, some water bodies have Rusty Crayfish Faxonius rusticus that commonly consume most of the body leaving only the head to be accurately measured. The goal of this research was to see if there is a relationship between specific measurements of the head and the total length of the fish. The number of Yellow Perch sampled in this study was 72 and all came from Lake Bemidji in Minnesota during the month of October …

Corals In Crisis: A Transcriptomic Investigation Of Stony Coral Tissue Loss Disease, Kelsey M. Beavers

Biology Dissertations - Archive

Coral reefs face existential threats due to climate change and human activities. The combined effects of ocean warming, overfishing, pollution, and habitat destruction have fundamentally altered the functionality of coral reefs and are driving a drastic increase in the prevalence and severity of coral disease outbreaks. Stony coral tissue loss disease (SCTLD) has emerged one of the most devastating disturbances to Caribbean reef ecosystems on record. Despite notable progress, the cellular mechanisms driving SCTLD pathogenesis remain poorly understood. To address this issue, my dissertation investigates the gene expression, histopathology, immune protein activity, and symbiont community dynamics involved in SCTLD progression …

South America Holds The Greatest Diversity Of Native Daisies (Asteraceae) In The World: An Updated Catalogue Supporting Continental-Scale Conservation, Andrés Moreira-Muñoz, Marcelo Monge, Mariana A. Grossi, Fabio Andrés Ávila, Vanezza Morales-Fierro, Gustavo Heiden, Berni Britto, Stephan Beck, Jimi N. Nakajima, Vanina G. Salgado, Juan Facundo Rodríguez-Cravero, Diego G. Gutiérrez

Publications and Research

Asteraceae is the world’s richest plant family and is found on all continents, in environments ranging from the coast to the highest mountains. The family shows all growth forms and, as in other angiosperm families, species richness is concentrated in tropical regions. South America has the highest diversity of Asteraceae in the world, yet taxonomic and distributional knowledge gaps remain. This study compiles an updated catalog of Asteraceae native to South America, based on national and regional checklists and ongoing large-scale flora projects. The resulting checklist includes a total of 6,940 species and 564 genera native to South America to …

Screening And Analysis Of The Urobiome For The Production Of Antimicrobial Peptides To Target Uropathogenic Escherichia Coli, Jennifer Jones

Theses

Urobiome research is currently at a nascent stage, due to a previously incorrect assumption that the bladder is a sterile environment. Improvements in bacterial culturing and DNA sequencing techniques have revealed a diverse resident bacterial community within the urinary tract (urobiome). As global incidences of multidrug- resistant urinary tract infections (UTIs) continue to increase, so too does the demand for novel antimicrobial therapies. Due to its relatively understudied nature, the urobiome represents a reservoir that could be mined as a potential source of novel antimicrobial compounds (e.g., bacteriocins). The aim of this thesis was to identify urobiome bacteriocins that could …

The Effects Of Early Exposure To Prescription/Illicit Drugs And Drug Metabolites On Larval Zebrafish Behavioral And Motor Function Development, Jacob Thomas, Dena Weinberger, Bikram Subedi, Brandon Capps

Murray State Theses and Dissertations

THE EFFECTS OF EARLY EXPOSURE TO PRESCRIPTION/ILLICIT DRUGS AND DRUG METABOLITES ON LARVAL ZEBRAFISH BEHAVIORAL AND MOTOR FUNCTION DEVELOPMENT

A Thesis Presented to the Faculty of the Department of Biology

Murray State University

Murray, Kentucky

In Partial Fulfillment of the Requirements for the Degree of Masters In Science

By Jacob Thomas, B.S., Murray State University

December 2024

Acknowledgements

Brandon Capps, who pretty much did a whole third of the legwork on this project and saved me lots of headaches;

Chandler Maddox, one of the University of Kentucky’s finest undergrads who came in from the top rope with a folding chair …

Effect Of Bioactive Borate Glass On Printability And Physical Properties Of Hydrogels, Fateme Fayyazbakhsh, Mehedi H. Tusar, Yue-Wern Huang, Ming C. Leu

Mechanical and Aerospace Engineering Faculty Research & Creative Works

Hydrogels are a key component in bioinks and biomaterial inks for bioprinting due to their biocompatibility and printability at room temperature. The research described in the present paper contributes to the advancement of bioprinting by studying the effect of bioactive borate glass (BBG) incorporated into hydrogels on printability and physical properties. In this study, we fabricated 3D-printed hydrogel scaffolds using gelatin and alginate hydrogel mixture incorporated with various amounts of BBG, a bio ceramic rich in therapeutic ions including boron, calcium, copper, and zinc. We investigated the effect of incorporating BBG on the density, viscosity, physical interactions, chemical structure, and …

Spatiotemporal Distribution Of Mangrove Along The Egyptian Red Sea Coast And Analysis Of Hydrological Impact On Growth Patterns, H. Sewilam, B. T. Hassan, B. S. Khalil

Faculty Journal Articles

This study presents an in-depth spatiotemporal analysis of mangrove ecosystems along Egypt’s Red Sea coast, utilizing satellite imagery and GIS to examine changes from 2003 to 2022. We evaluate the effects of hydrological factors, specifically rainfall and runoff -presented by Stream Power Index-, on mangrove growth patterns. Results indicate a significant increase in mangrove areas, with a notable annual growth rate, despite a reduction in a specific region. This research highlights the integral role of catchment area runoff (R2 = 0.735, R = 0.857, P-value = 0.003 < 0.05, CV = 70.26%), rather than direct rainfall, in mangrove expansion, contributing to the understanding of mangrove resilience and informing sustainable coastal management strategies. The study bridges a significant research gap by mapping decadal mangrove changes, offering insights into the dynamics affecting these crucial ecosystems.

Using Habitat Modeling To Locate New Populations Of Dunn's Salamander (Plethodon Dunni) Near Its Southern Geographic Range Limit, Mary A. Mackey

Cal Poly Humboldt theses and projects

Habitat suitability models were utilized to direct survey efforts for Plethodon dunni in Northern California. Two models were created, one using traditional statistical methods (GLM or Generalized Linear Modeling) and the other using a machine learning method (MaxEnt or Maximum Entropy modeling). Plots were selected from areas of agreement and disagreement between the models to carry out presence surveys. The MaxEnt model yielded better predictions than the GLM model. The two models had three variables in common (annual temperature range, precipitation of driest month, and precipitation seasonality) and predicted suitable habitat within the known range of P. dunni. The …

Characterizing The Habitat Use Of Pacific Coast Feeding Group Gray Whales (Eschrichtius Robustus) And The Spatial And Temporal Variability Of Their Benthic And Planktonic Invertebrate Prey In Northern California, Robyn E. Norman

Cal Poly Humboldt theses and projects

As opportunistic foragers, the Eastern North Pacific population (~20,000) of gray whales (Eschrichtius robustus) feed on diverse benthic and planktonic invertebrates in northern Alaska foraging grounds before they undertake one of the largest yearly migrations of any mammal to breed in Baja California, Mexico. While most of the population travels to the summer foraging grounds in Alaska, a sub-group of whales (~230) called the Pacific Coast Feeding Group (PCFG) summer between British Columbia, Canada, and northern California. The diet of PCFG whales typically includes high-density and/or high-caloric prey items like mysids and diverse species of amphipods, yet a …

Using Biological Parameters And Traditional Ecological Knowledge To Study The Status Of Spirinchus Starksi (Night Smelt) In Northern California, Z. Zenobia

Cal Poly Humboldt theses and projects

Night smelt spawns from central California to southeast Alaska, on the shore of sandy beach surf zones at night. This species is a vital part of regional food webs and, in California, is fished commercially primarily in Humboldt and Del Norte counties. It has cultural importance for dietary and subsistence needs to the Tribes across the coast, as well as inland. The objectives of this thesis are as follow: study the status of the population of night smelt in Humboldt and Del Norte counties by (A) comparing the abundance, length, weight, age, sex ratio, and timing of reproduction of the …

Assessing The Effects Of Remaining Northern California Kelp Forest Mesopredators On Purple Sea Urchin Abundance, Distribution, And Feeding Activity, Sandra E. Traverso

Cal Poly Humboldt theses and projects

Kelp forests are threatened by regional abiotic and biotic stressors, including overgrazing by sea urchins. On the north coast of California, purple sea urchins (Strongylocentrotus purpuratus) are prolific grazers of kelp and with the regional extinction of their main predator (sunflower stars, Pycnopodia helianthoides), it is unknown whether any remaining mesopredators could exert top-down control of purple urchin populations. Other known predators of purple urchins in northern California include rock crabs, which have been shown to control sea urchin populations in Atlantic urchin barrens and indirectly cause phase shifts back to kelp forests. Yet, little is known …

Influence Of Seeding Strategy On Insect Communities Within Utility Lands, Kylee E. Nissen

Masters Theses

Pollinator populations are in decline globally due to anthropogenic changes, particularly in areas affected by agricultural expansion and urbanization. Utility lands - managed to prevent tall vegetation encroachment - represent an opportunity to establish native grasslands and support pollinator communities. This study investigates how different seeding strategies used by utility companies influence pollinator community composition within a 15-acre electric right-of-way (ROW) outside St. Louis, Illinois. Despite the logical benefits of native seeding to pollinators, utility companies are often hesitant to do this, often favoring seeding to turf. Seeded in late 2021, the site incorporates randomized plots with turfgrass seeding (no …

Nocturnal Behavior Of Communally Roosting American Crows (Corvus Brachyrhynchos), Caitlin M. Mrowiec

Masters Theses

During the winter months in Charleston, Illinois, thousands of American crows (Corvus brachyrhynchos) gather together each night to roost. While aspects of this impressive sight have been studied elsewhere, there is very limited information on how crows behave at night. Additionally, the mechanics and origins of communal roosting are not especially well understood, and the behaviors involved are not always consistently described. This study sought to provide a more complete assessment of crow communal roosting after sunset. I collected data between 2018 and 2020 by locating communal roosts and conducting continuous observations for 4 hours after sunset, with additional checks …

Diving At High Altitude: O2 Transport And Utilization In The Ruddy Duck And Torrent Duck In The Andes, Kevin G. Mccracken, Graham R. Scott, Luis Alza, Andrea Astie, Ciska Bakkeren, Emil Bautista, Mariana Bulgarella, Rebecca Cheek G. Cheek, Beverly A. Chua, Neal J. Dawson, Alexis Diaz, Catherine M. Ivy, Peter B. Frappell, Cecilia Kopuchian, Sabine L. Laguë, John N. Maina, Violeta Muñoz-Fuentes, Elizabeth R. Schell, Matthew M. Smith, Ryan J. Sprenger, Pablo L. Tubaro, Elizabeth R. Schell, Matthew M. Smith, Ryan J. Sprenger, Pablo L. Tubaro, Thomas Valqui, Roy E. Weber, Daniela Wilner, Robert E. Wilson, Julia M. York, William K. Milsom

Occasional Papers of the Museum of Natural Science, Louisiana State University

Hypoxia and cold temperatures create unique physiological challenges for high-altitude organisms that can vary depending on lifestyle. While nearly all studies of air-breathing animals at high altitude are from terrestrial species, species that breath-hold dive underwater at high altitude encounter a very different set of selective pressures influencing their phenotype. The goal of this publication is to highlight the changes in O2 transport and utilization in high-altitude diving birds relative to divers at sea level, and the extent to which these changes are qualitatively distinct from phenotypic changes in non-diving species at high altitude. For example, while high capacities for …

Development Of Innovative Flocculation Technologies For Agricultural Water Treatment, Noor Haleem

Electronic Theses and Dissertations

The development of innovative flocculation technologies is essential for addressing the challenges of agricultural water treatment. These technologies play a crucial role in removing contaminants such as suspended solids and nutrients, thereby ensuring safer water for irrigation and livestock consumption. By enhancing water quality and wastewater management, they contribute significantly to environmental sustainability and public health in agricultural communities. This comprehensive thesis extensively explores various dimensions of flocculation, with a focused effort on methodologies and resources aimed at strengthening sustainability and efficiency. A pivotal aspect of the research involves synthesizing cationic starch (CS), a flocculant derived from an underutilized resource, …

A Genus In The Bacterial Phylum Aquificota Appears To Be Endemic To Aotearoa-New Zealand, Jean F. Power, Carlo R. Carere, Holly E. Welford, Daniel T. Hudson, Kevin C. Lee, John W. Moreau, Anna-Louise Reysenbach, Thijs J.G. Ettema, Multiple Additional Authors

Biology Faculty Publications and Presentations

Allopatric speciation has been difficult to examine among microorganisms, with prior reports of endemism restricted to sub-genus level taxa. Previous microbial community analysis via 16S rRNA gene sequencing of 925 geothermal springs from the Taupō Volcanic Zone (TVZ), Aotearoa-New Zealand, revealed widespread distribution and abundance of a single bacterial genus across 686 of these ecosystems (pH 1.2-9.6 and 17.4-99.8 °C). Here, we present evidence to suggest that this genus, Venenivibrio (phylum Aquificota), is endemic to Aotearoa-New Zealand. A specific environmental niche that increases habitat isolation was identified, with maximal read abundance of Venenivibrio occurring at pH 4-6, 50-70 °C, and …

Considerations And Applications Of Environmental Dna In Biodiversity Studies, Sarah Tomke

Theses and Dissertations--Forestry and Natural Resources

Environmental DNA (eDNA) sampling—the detection of species through genetic material shed into the environment—has become an efficient and reliable method for biodiversity assessments. The method has grown in popularity due to its non-invasive and non-destructive nature, and has revolutionized monitoring efforts for rare, elusive, and cryptic species for which traditional sampling approaches are often costly and ineffective. Hundreds of studies have utilized this technique to study species occupancy, delineate distributions, and assess relative community composition. Although eDNA sampling is an effective strategy for many conservation and ecological studies, recently, light has been shed on some of its potential drawbacks and …

Ua94/6/18 Stephen Flora Student / Alumni Papers, Wku Archives

WKU Archives Collection Inventories

Records created by and about Stephen Flora during his years as a student at Western Kentucky University.

Behavioral Ecology Of The Colorado Brown Tarantula (Aphonopelma Hentzi): Activities Displayed Around The Burrow Through Juvenile Group Dispersal, Bradley Allendorfer

Master's Theses and Doctoral Dissertations

The life history strategy of the Colorado brown tarantula (Aphonopelma hentzi) typically includes males spatially scattering in search for a female mate in the fall, followed by female attendance of fertilized eggs the following summer. Here, I highlighted aspects associated with this female parental care. Specifically, I compared the activities of maternal (egg-attending) tarantulas to their non-maternal (not egg-attending) counterparts, as this may be a costly time for these egg-attending individuals. I concluded that maternal individuals tended to show reduced activity at the burrow entrance, however; these, results were significant in only one comparison. After weeks of this parental care, …

Maxent Ecological Niche Models For Alternanthera Philoxeroides, Amynothrips Andersoni, And Agasicles Hygrophila, Samuel A. Schmid, Andrés F. Sánchez-Restrepo, Alejandro J. Sosa, Gray Turnage, Gary N. Ervin

CAS Publications

Alternanthera philoxeroides is an aquatic invasive weed from South America with a long history of biological control. The well-studied Agasicles hygrophila (alligatorweed flea beetle) successfully controls Al. philoxeroides in some parts of its invaded range, but Ag. hygrophila is unsuitable in other areas due to its intolerance to cold temperatures. An understudied biological control agent, Amynothrips andersoni (alligatorweed thrips) has shown greater tolerance to cold temperatures, but no research has been conducted to determine its ecological niche with respect to Al. philoxeroides. Additionally, climate change is predicted to shift the ecological niches of species globally, and these changes must be …

Male Beetle Courtship Dance Analysis By Deeplabcut Technology, Andrea Newbrough

Undergraduate Theses, Professional Papers, and Capstone Artifacts

No abstract provided.

Microbiological Investigation Of Local Native Clays And Samples From The Scripps Ceramic Studio, Kelly Fuller

Scripps Senior Theses

This study explores the relationship between microorganisms and clay using samples currently being utilized in the Lincoln Ceramics Studio at Scripps College. Clay science spans disciplines, from geology and soil science to industrial material development and artistic practices. Although biological processes have been thought to effect clay properties such as plasticity and malleability, the interplay between microorganisms and clay minerals has not been thoroughly investigated in the scientific community. Drawing from diverse disciplines, this research investigates the microbial ecology of clay bodies to unveil potential innovations in ceramics production. In this experiment, colony-forming unit (CFU) assays were performed in both …

Hamstring And Quadriceps Activation During Single Leg Hopping At Varying Frequencies: Electromyography Analysis, Jemma Bosselman

Scripps Senior Theses

Identification of knee motor control strategy is salient both for biomechanical understanding of the lower limb and for medical applications. Integral to knee function are the quadriceps and hamstring, an antagonistic muscle pair. Sub-optimal relative activation of the pair can increase injury potential. Muscle activation patterns are largely activity specific, necessitating muscle control research across various tasks. Single leg hopping has been sparsely studied, particularly for muscle activation in relation to hopping frequency. This project thus aimed to determine the effect of single leg hopping frequency on quadriceps and hamstring activation using surface electromyography (EMG), with the vastus lateralis (VL) …

Complete Genome Sequence Of Microbacterium Foliorum Phage Curie, A Podovirus Isolated From Soil In Spokane, Washington, Emma N. Horton, Kathryn T. Cook, Kyra G. Cronin, Avery T. Haag, Sierra M. Salter, Nicole A. Stojanovic, Zoe E. Fry, Brian M. Connolly, Rebekah F. Hare, Ann-Scott H. Ettinger, Marianne K. Poxleitner, Kirk Anders

Biology Faculty Scholarship

Bacteriophage Curie is a podovirus that infects Microbacterium foliorum. The Curie genome spans 16,810 bp, has 90 bp terminal inverted repeats, and includes 23 protein-coding genes. Its genome architecture resembles phage PineapplePizza and other phi29-like phages. Together, Curie and PineapplePizza form a new actinobacteriophage Cluster GI.

Persistence Of Wastewater-Associated Antibiotic Resistant Bacteria In River Microcosms, Aoife P. Mahaney

Theses and Dissertations

The spread of antibiotic-resistant bacteria (ARB) associated with wastewater is a significant environmental concern, but little is known about the persistence and proliferation of these organisms in receiving water bodies after discharge. To address this knowledge gap, we performed a series of microcosm experiments in which river water was amended with either untreated or treated wastewater, and the abundance of viable ciprofloxacin-, Bactrim-, and erythromycin-resistant bacteria was monitored for 72 hours.

Both types of wastewater amendments increased the initial abundance of ARB compared to microcosms containing only river water. The increase was greatest with untreated wastewater, but that effect decreased …

Dynamic Genomic Evolution Via Active Ltr Transposable Elements In Maize, Taylor Isles

Theses, Dissertations and Culminating Projects

Long terminal repeats (LTR) retrotransposons, found across eukaryotes, are transposable elements which can copy and insert themselves into other loci within a genome. These transposable elements are similar to retroviruses in that they rely on reverse transcriptase to “copy and paste” themselves elsewhere in the genome. From the RNA transcript they are able to use reverse transcriptase to make another DNA copy of themselves. This initially gave them the moniker, selfish genes. However, in the decades after the discovery of reverse transcriptase and LTR retrotransposons, it became known that non-genic DNA could have other functions. LTR retrotransposons are sources of …

Assessing The Feasibility Of Seaweed Farm-Offshore Wind Co-Location In New Jersey, Brianna Delaney Reynolds

Theses, Dissertations and Culminating Projects

New Jersey’s offshore wind energy sector may provide an opportunity to advance the seaweed farming industry through ocean multi-use. Yet, opportunities, constraints, and knowledge gaps for seaweed farm-offshore wind co-location remain largely uninvestigated. Here, I determine the suitability of native seaweed species for offshore cultivation in New Jersey and conduct a quick scoping review (QSR) to assess the knowledge base surrounding seaweed farm-offshore wind multi-use. Saccharina latissima and Fucus vesiculosus were identified as native species with commercial value for cultivation in New Jersey. Yet, offshore waters at the location of a wind development site had insufficient nutrients to meet the …

Plasmid-Borne Biosynthetic Gene Clusters Within A Permanently Stratified Marine Water Column, Paraskevi Mara, David Geller-Mcgrath, Elizabeth A. Suter, Gordon T. Taylor, Maria G. Pachiadaki, Virginia P. Edgcomb

BCES: Faculty Publications

Plasmids are mobile genetic elements known to carry secondary metabolic genes that affect the fitness and survival of microbes in the environment. Well-studied cases of plasmidencoded secondary metabolic genes in marine habitats include toxin/antitoxin and antibiotic biosynthesis/resistance genes. Here, we examine metagenome-assembled genomes (MAGs) from the permanently-stratified water column of the Cariaco Basin for integrated plasmids that encode biosynthetic gene clusters of secondary metabolites (smBGCs). We identify 16 plasmid-borne smBGCs in MAGs associated primarily with Planctomycetota and Pseudomonadota that encode terpenesynthesizing genes, and genes for production of ribosomal and non-ribosomal peptides. These identified genes encode for secondary metabolites that are …

Characterizing The Role Of Temperature On West Nile Virus Evolution And Vector-Virus Interactions, Rachel Lucy Fay

Legacy Theses & Dissertations (2009 - 2024)

West Nile virus (WNV) is the most common mosquito-borne disease in the contiguous U.S. WNV is a member of the Flaviviridae family which is group of single stranded positive sense RNA genome viruses. It is commonly vectored by Culex mosquitoes and is found in a transmission cycle between its amplifying hosts of birds. Incidental hosts of WNV include people and animals. WNV is known to cause flu-like illness and in rare cases can become neuroinvasive. There are currently no approved therapeutics on the market for WNV. Since the beginning of the 20th century the earth’s average temperature has increased by …