Digital Commons Network^™

Two New Species Of Dulcicalothrix (Nostocales, Cyanobacteria) From India And Erection Of Brunnivagina Gen. Nov., With Observations On The Problem Of Using Multiple Ribosomal Operons In Cyanobacterial Taxonomy, Aniket Saraf, Prashant Singh, Naresh Kumar, Sagarika Paul, Jeffrey R. Johansen

2024 Faculty Bibliography

Two new species of Dulcicalothrix, D.adhikaryi sp. nov. and D.iyengarii sp. nov., were discovered in India and are characterized and described in accord- ance with the rules of the International Code of Nomenclature for algae, fungi, and plants (ICN). As a result of phylogenetic analysis, Calothrix elsteri is reas- signed to Brunnivagina gen. nov. During comparison with all Dulcicalothrix for which sequence data were available, we observed that the genus has six ribosomal operons in three orthologous types. Each of the three orthologs could be identified based upon indels occurring in the D1–D1′ helix sequence in the ITS rRNA region …

Four Novel Species Of Kastovskya (Coleofasciculaceae, Cyanobacteriota) From Three Continents With A Taxonomic Revision Of Symplocastrum, Brian Jusko, Jeffrey R. Johansen, Smail Mehda, Elvira Perona, M Angeles Muñoz-Martín

2024 Faculty Bibliography

Studies performed in North America, Africa, and South America have led to the isolation of four new species of Kastovskya, a filamentous cyanobacterial genus that before this manuscript had only one species, Kastovskya adunca from Chile. Kastovskya nitens and K. viridissima were isolated from soils on San Nicolas Island, K. sahariensis was isolated from hypolithic habitats from the Sahara Desert in Algeria, and K. circularithylacoides was isolated from hypolithic habitats in Chile. The molecular analyses are corroborated by morphological data, morphometric analysis, and ecological and biogeographical considerations for robust polyphasic descriptions of all taxa. The peculiar transatlantic distribution of this …

A Multivariate Analysis Of Phytoplankton Assemblages And Environmental Variables In Chautauqua Lake, New York, Emily Palmer

Masters Theses

No abstract provided.

Ms Environmental Biology Capstone Project, Klaudia Sowizral

Regis University Student Publications (comprehensive collection)

Thelephorales fungi are considered important ectomycorrhizal fungi (EMF) in forest ecosystems, yet the patterns of diversity and distribution and the processes that shape them remain poorly understood. This study aims to address this research gap by conducting an exploratory analysis of Thelephorales fungi in soil and litter across various habitat types and environmental characteristics. To do so, we used data collected and synthesized by the Climush project, a multi-year, systematic sampling of macrofungal diversity across North America, that aims to assess sexual (sporocarp and spore trap data) and asexual (soil and endophyte metabarcode data) diversity and distribution in relation to …

Ms Environmental Biology Capstone Project, Sarah Luper

Regis University Student Publications (comprehensive collection)

Recreational trails and the presence of invasive species such as Bromus inermis can both disturb grassland community composition. Trails can act as dispersal corridors for plant material, but can also be a source of trampling and compaction. Invasive grasses like Bromus inermis can easily establish in grasslands and decrease species richness by increasing competition. Understanding these effects, this study aims to understand how both the presence of recreational trails as well as the presence of Bromus inermis affect species richness and overall community composition at Two Ponds National Wildlife Refuge. Belt transect sampling took place in fall 2019 and again …

Patterns Of Genetic Structure In Spiders Beetles, Naiya Sims

Mahurin Honors College Capstone Experience/Thesis Projects

Spider beetles are a poorly known group of North American beetles in the family Ptinidae. Protection of biodiversity requires knowledge of species- and population-level distinctiveness, so data regarding genetic structure of spider beetles can shed light on conservation priorities. Spider beetles in the genus, Coleotestudus, are distributed broadly in the southwestern US. Given their small size and lack of flight, it is presumed that the dispersal capability of Coleotestudus is limited, leading to strong population structure on a small spatial scale. We used a three-enzyme restriction-site-associated DNA sequencing (3RAD) strategy to identify single nucleotide polymorphisms (SNPs) throughout the genome …

Analysis Of Protein-Protein Interactions Between Legionella Pneumophilia Effectors, Briana Harness

Mahurin Honors College Capstone Experience/Thesis Projects

Legionella pneumophila an intracellular, opportunistic pathogen that is the causative agent of Legionnaires’ disease and Pontiac fever. A key component of Legionella’s pathogenicity is a series of effector proteins, which aid in the establishment of the Legionella-containing vacuole (LCV). The abundant library of effector proteins L. pneumophila has within its arsenal gives L. pneumophila the ability to infect several different hosts. The pathogenesis of L. pneumophila within various hosts depends on its ability to modulate the activity of its effector proteins through protein-protein interactions within effectors and eukaryotic host cell proteins. By understanding how L. pneumophila regulates its effectors, a …

Mercury Content In The Baleen Plates Of Rorqual Whales, David L. Taylor, Ava Cieplinkski, Max Ajemian, Matthew Savoca

Student Research Symposium

Mercury is a persistent environmental contaminant posing significant risks to wildlife health due to its propensity for bioaccumulation in organismal tissues. This study investigated total mercury concentrations in the baleen plates of rorqual whales (Family Balaenopteridae), specifically the Fin whale (Balaenoptera physalus), Blue whale (B. musculus), and Rice’s whale (B. ricei). Archived baleen samples were sourced from the Smithsonian’s National Museum of Natural History and analyzed for total mercury (Hg) content (ppm dry weight) using atomic absorption spectroscopy. Male Fin and Blue whales from the Antarctic, South Pacific region (1947-1948), with body lengths ranging from 21 to 24 m, exhibited …

What Is The Best Way To Combat The Symptoms Of Knee Osteoarthritis?, Anna Reich

The Science Journal of the Lander College of Arts and Sciences

Osteoarthritis is a debilitating disease that a significant percentage of adults contend with. This degenerative joint disease causes the breakdown of tissue at the joint, which leads to symptoms of pain, decreased function, and limited range of motion. There are various methods of combating these symptoms. Treatment options include basic lifestyle modifications and other nonpharmacological methods, oral and topical drugs, intraarticular injections, and surgery. There are benefits and risks, as well as a lack of effectiveness associated with these treatments. The purpose of this paper is to determine whether there is an optimal treatment for this disease. Based on the …

Environmental Biology Masters Capstone, Antonio Gonzalez-Pita

Regis University Student Publications (comprehensive collection)

Human wildlife interactions (HWI) pose a complex challenge for wildlife managers. Human encroachment into wildlife habitat and the growing number of outdoor recreationists are increasing the frequency of contact and conflict, especially in regions such as the Front Range of Colorado. Geographic information systems (GIS), which use a combination of remote sensing and environmental survey data, allow for predictive spatial analyses of where human wildlife interactions are likely to occur. I used publicly reported observations of moose to create spatial predictive maps in a species distribution model framework. Slope and elevation were shown to be the strongest predictors of HWI, …

The Influence Of Abiotic Stress And Cultivar Variation On Plant Defenses And Resistance To Emerald Ash Borer (Agrilus Planipennis) In Cultivated Olive (Olea Spp), Idris B. Elesin

Browse all Theses and Dissertations

Emerald ash borer (EAB), Agrilus planipennis, is an invasive pest that significantly impacts olive trees (Olea europaea). This study aimed to assess the role of abiotic stress factors such as drought and salinity in influencing plant defenses and resistance to EAB, while also examining cultivar variation in resistance. The study specifically aimed to address: (1) What effects do varying degrees of abiotic stress (drought, salinity) have on olive trees' antioxidant and peroxidase activity in olive tree? (2) Do distinct olive cultivars exhibit varying levels of resistance to EAB under various stressors? We used a controlled experimental design with two stress …

Role Of Insulin-Like Growth Factor-1 Signaling In Diet-Enhanced Bone Elongation, Cassaundra A. White

Theses, Dissertations and Capstones

Childhood obesity has increased precipitously to the point that almost 20% of children between the ages of 2 and 19 have been diagnosed with obesity. While obesity is a complex metabolic disorder, one contributing factor is diet, particularly a diet high in fat. Among many problems associated with diet-induced obesity, the impact on skeletal health is often overlooked. In addition to increased stress on the skeleton due to excess weight, obesity also disrupts the endocrine and immune systems that, in turn, can secondarily alter skeletal growth. Obesity during the early years of childhood is particularly detrimental because the skeleton is …

Locus-Specific Differential Expression Of Human Satellite Sequences In The Nuclei Of Cancer Cells And Heat-Shocked Cells, Christina Rabeler, N. Paterna, Rajiv Potluri , '20, Lia R. D’Alessandro , '21, Anusha Bhatia , '24, Shu Yi Chen , '24, Johanna Lee , '23, Bereketab Abeje , '23, Benjamin Lipchin , '25, B. R. Carone, Dawn M. Carone

Biology Faculty Works

Human satellites (HSats) are pericentric, tandemly repeating satellite DNA sequences in the human genome. While silent in normal cells, a subset of HSat2 noncoding RNA is expressed and accumulates in the nucleus of cancer cells. We developed a FISH-based approach for identification of the distribution of three subfamilies of HSat2 (A1, A2, B) sequences on individual human chromosomes. Further, using the HSat subfamily annotations in the T2T completed centromere satellite (CenSat) sequence, we isolated, defined and mapped differentially expressed sequence variants of nuclear-restricted HSat2 and HSat3 RNA from cancer cell lines and heat-shocked cells. We identified chromosome-specific and subfamily-specific expression …

The Iglon Family Of Cell Adhesion Molecules Expressed In Developing Neural Circuits Ensure The Proper Functioning Of The Sensory System In Mice, K. Singh, M. Jayaram, A. Hanumantharaju, T. Tõnissoo, T. Jagomäe, K. Mikheim, S. Muthuraman, Scott F. Gilbert, M. Plaas, M. K. E. Schäfer, J. Innos, K. Lilleväli, M.-A. Philips, E. Vasar

Biology Faculty Works

Deletions and malfunctions of the IgLON family of cell adhesion molecules are associated with anatomical, behavioral, and metabolic manifestations of neuropsychiatric disorders. We have previously shown that IgLON genes are expressed in sensory nuclei/pathways and that IgLON proteins modulate sensory processing. Here, we examined the expression of IgLON alternative promoter-specific isoforms during embryonic development and studied the sensory consequences of the anatomical changes when one of the IgLON genes, Negr1, is knocked out. At the embryonal age of E12.5 and E13.5, various IgLONs were distributed differentially and dynamically in the developing sensory areas within the central and peripheral nervous …

Noise And Light Pollution Elicit Endocrine Responses In Urban But Not Forest Frogs, J. A. H. Smit, R. Vooijs, P. Lindenburg, Alexander T. Baugh, W. Halfwerk

Biology Faculty Works

Urban areas are characterised by the presence of sensory pollutants, such as anthropogenic noise and artificial light at night (ALAN). Animals can quickly adapt to novel environmental conditions by adjusting their behaviour, which is proximately regulated by endocrine systems. While endocrine responses to sensory pollution have been widely reported, this has not often been linked to changes in behaviour, hampering the understanding of adaptiveness of endocrine responses. Our aim was, therefore, to investigate the effects of urbanisation, specifically urban noise and light pollution, on hormone levels in male urban and forest túngara frogs (Engystomops pustulosus), a species with …

Lyme Disease Ecology In The Eastern United States: An Overview, Aliya C. Aguirre

Biology Student Work

Lyme disease is the most common vector-borne disease in the United States of America (USA). In North America, Lyme disease is caused by Borrelia burgdorferi sensu stricto (s.s.) and vectored by the blacklegged tick, Ixodes scapularis. Historically, Lyme disease has been primarily restricted to the northeastern United States, despite I. scapularis occurring throughout the entire eastern region. There are genetically unique northern and southern populations of I. scapularis. The differences between these two populations have been hypothesized to be driving the difference in Lyme disease case incidence in the northeastern and southeastern United States. This review will examine …

Editorial: Volume Ii: Fibrotic Tissue Remodeling As A Driver Of Disease Pathogenesis, Arkadeep Mitra, Sarika Saraswati, Trayambak Basak

Biology Faculty Research

No abstract provided.

How Does Marijuana Affect Reproductive Health?, Miriam Blatner

The Science Journal of the Lander College of Arts and Sciences

Marijuana use has become prevalent worldwide, especially amongst men and women of reproductive age. Marijuana acts on Cannabinoid receptors, which are a part of the Endocannabinoid system. CB1 and CB2 receptors are most found in humans. Activation of Cannabinoid receptors in males cause a reduction in healthy sperm parameters and inhibits the acrosomal reaction, and therefore minimizes fertility potential. Researchers have not yet discovered any significant interactions between marijuana and the female reproductive system. There has also been limited evidence displaying the effects that marijuana has on pregnancy and breastfeeding of infants. Nevertheless, physicians have recommended against marijuana use while …

What Is Aphthous Stomatitis? What Are The Possible Causes And Treatments?, Shirah Balakhane

The Science Journal of the Lander College of Arts and Sciences

The historical understanding of Recurrent Aphthous Stomatitis (RAS), also known as canker sores, has evolved. This paper aims to collect data that determines the underlying factors that can cause RAS and highlights treatments or preventive measures one should take. RAS is a common mucosal disease of the mouth that affects healthy people and presents atypically in immunocompromised people. Geographical, age, and gender-related factors can all affect the prevalence. RAS still has no known cause; however, several systemic, local, immunologic, genetic, dietary, allergy, and microbiological factors—including immunosuppressive medications and stress—have been suggested as potential culprits. Using topical and systemic medicines, the …

Ethanol-Containing Mouthwash: Is It Safe? Exploring The Potential Risks And Benefits, Michoel Adler

The Science Journal of the Lander College of Arts and Sciences

This thesis investigates the safety of ethanol-containing mouthwash, focusing on the risks and benefits associated with the ethanol in mouthwash and its metabolic product, acetaldehyde. While ethanol is an effective antimicrobial agent, its carcinogenic and cytotoxic effects raise some concerns. This paper examines ethanol and acetaldehyde exposure, its toxicity, and its effects on oral health. Existing studies have found risks associated with ethanol exposure and have not found decreased effectiveness in ethanol-free mouthwash controlling oral bacteria. Further research is needed to determine the exact risks associated with ethanol-containing mouthwash and should focus on identifying the most effective and safest combination …

The Impact Of Maternal Thyroid Dysfunction During Pregnancy On Fetal Development, Ariella Eisig

The Science Journal of the Lander College of Arts and Sciences

Thyroid dysfunction during pregnancy significantly impacts both maternal and fetal health, posing physical and neuropsychological development risks for the neonate. This paper reviews the mechanism of thyroid function, the etiology, screening for hypothyroidism and hyperthyroidism, and the effects on fetal development and pregnancy outcomes. Multiple studies have shown that maternal thyroid dysfunction can lead to various complications such as IUGR, preterm birth, neonatal Grave’s disease, and adverse neuropsychological outcomes in children. Proper screening, monitoring, and management of maternal thyroid function are essential to lessen these risks and ensure optimal fetal development. Further research is warranted to better understand the complex …

Fungal Endophytes In Native Prairie Plants Vs. Lespedeza Cuneata, Ilyana Martinez, Ilana Fay Zeitzer, Noah Brown, Anthony Yannarell

Parkland Science Scholars

Fungal leaf endophytes(FLE) are microorganisms that live in the leaf tissues of plants, influencing plant health, growth, and stress resistance. The prairie ecosystem, with its diverse flora, provides an ideal environment for studying the symbiotic relationships between endophytes and plants.

In recent years, the invasive species Lespedeza cuneata has become increasingly prevalent, continuously invading native prairie communities. The Phillips Tract Research Area (PHRE), a prairie established in 2018 for research purposes, has also been invaded by L. cuneata. PHRE was designed to investigate the impact of pesticide drift on prairie restoration. Despite various management efforts, L. cuneata has persistently invaded …

The Effects Of Habitat Characteristics And Location On Brook Trout Size Distribution, Bryce Groves

Journal of Earth and Life Science

Adfluvial Brook Trout Salvelinus fontinalis are known to typically grow larger than riverine Brook Trout. The Kabekona River in Hubbard County, Minnesota exhibits suitable habitat for both fluvial and adfluvial Brook Trout populations. The objective of this study was to analyze the relationships between depth, stream width, canopy cover, water temperature, sediment size, and distance from Kabekona Lake on Brook Trout size distribution in the Kabekona River. Brook Trout (n=35) were angled from the Kabekona River from August 24 to September 26, 2023. Each fish was measured and released, with habitat metrics being recorded at time of release. ArcGIS was …

Avian Extraembryonic Membranes Respond To Yolk Corticosterone Early In Development, Emily P. Harders, Mitch Agustin, Ryan T. Paitz

Faculty Publications – Biological Sciences

During times of maternal stress, developing embryos can be exposed to elevated levels of glucocorticoids which can affect development and permanently alter offspring phenotype. In placental species, the placenta mediates fetal exposure to maternal glucocorticoids via metabolism, yet the placenta itself responds to glucocorticoids to regulate offspring growth and development. In oviparous species, maternal glucocorticoids can be deposited into the egg yolk and are metabolized early in development. This metabolism is mediated by the extraembryonic membranes, but it is unknown if the extraembryonic membranes also respond to maternal glucocorticoids in a way comparable to the placenta. In this study, we …

Invasion Ecology Of Alternanthera Philoxeroides, Cyperus Blepharoleptos, Panicum Repens, And Triadica Sebifera, Samuel A. Schmid, Adrián Lázaro-Lobo, Cory M. Shoemaker, Andrew Sample, Mackenzie Cade, Gary N. Ervin, Gray Turnage

GRI Publications

Several invasion ecology hypotheses explain patterns of invasion, but these effects are often complex and multifaceted. Within the study of aquatic invasive species, small aquatic ecosystems are often neglected, despite them representing most global freshwater bodies. This study uses community composition and environmental and geographic factors to explain the occurrence of invasive species in small lakes in the southeastern United States. Specifically, this study predicted that several ecosystem factors would predict the probability of occurrence of invasive species of the lakes studied. Four of the most common invasive species were selected as the focus of this study: Alternanthera philoxeroides, Cyperus …

Reaching Across The Divide: Tools For Bridging Structural And Viral Genomics Using A Combination Of Biophysical Principles And Machine Learning, Diana Yvette Lee

CGU Theses & Dissertations

Bacteriophages are the most ubiquitous biological entity on the planet, but most viruses found in nature cannot be cultured in the laboratory and encode genes whose sequences lack similarity with current nucleotide and protein databases. New predictive methods are thus necessary to determine the phenotype of viruses. In this work, we leverage the physical geometrical constraints of viruses to quantify the correlation between the geometric and genomic characteristics of tailed phages, and predict physical features such as architecture and genome length of uncultured viruses using allometric models and machine learning algorithms. Here, we present a model to predict the T-number …

Plaster Creek Stewards Curb-Cut Rain Garden Social Impacts Study, Eleanor Vander Ark, Laura Luchies

Watershed Reports

As one method of minimizing pollutants in Plaster Creek, Plaster Creek Stewards (PCS) has installed Curb-Cut Rain Gardens (CCRGs) in the downstream neighborhoods of the Plaster Creek Watershed. CCRGs sit in the parkway between the sidewalk and the street, are planted with native plants, and have a cut in the curb to allow the influx of rainwater from the street. These gardens divert polluted rainwater from the creek by catching the water closer to where it falls and allowing it to filter into the ground.

As part of a grant from the Michigan Department of Environment, Great Lakes, and Energy …

Hen-Durance Training—Effects Of An Exercise Regimen On Laying Hen Muscle Architecture And Fracture Prevalence, Grace A.T. Hong, Bret W. Tobalske, Nienke Van Staaveren, Emily M. Leishman, Tina M. Widowski, Donald R. Powers, Alexandra Harlander

Faculty Publications - Department of Biological & Molecular Science

Domestic chickens kept for egg laying navigate inclines such as ramps in some commercial housing systems to aid in transitions between housing tiers. Laying hens use their wings and hindlimbs in a locomotion called wing-assisted incline running (WAIR) to ascend steep inclines. There is a potential relationship between the strength of the main flight muscles and the health of the keel bone from which they originate. We sought to test the effects of a controlled, WAIR-based exercise regimen during rearing on keel bone health and muscle properties of white- and brown-feathered laying hens. The WAIR exercise regimen, which consisted of …

The Professional Identity Of Stem Faculty As Instructors Of Course-Based Research Experiences, Quinn Vega

Department of Biology Faculty Scholarship and Creative Works

The professional identity of scientists has historically been cultivated to value research over teaching, which can undermine initiatives that aim to reform science education. Course-Based Research Experiences (CRE) and the inclusive Research and Education Communities (iREC) are two successful and impactful reform efforts that integrate research and teaching. The aim of this study is to explicate the professional identity of instructors who implement a CRE within an established iREC and to explore how this identity contributes to the success of these programs. 97 CRE instructors from the Science Education Alliance (SEA) iREC participated in a 2-year, multi-stage, qualitative research project …

Managing Stress: A Study Of Stress Response Mechanisms In Mycobacteria, Augusto C. Hunt Serracin

Biology Dissertations - Archive

Mycobacteria encompass many pathogenic species known to cause severe disease in humans. A well-known example is Mycobacterium tuberculosis (Mtb), the causative agent of the lung disease tuberculosis, which kills millions of humans worldwide yearly. Pathogenic mycobacteria like Mtb are challenging to treat because of their innate ability to adapt to environmental stress. Their unique cell physiology and conserved stress responses allow them to combat biological insults, regulate growth, and regulate genes involved in stress; all these responses increase tolerance to antibiotics. The current therapies to treat mycobacterial infections are lengthy and, at times, unsuccessful, partly due to antibiotic tolerance. A …