Digital Commons Network^™

Photon Emission Induced By The Scanning Tunneling Microscope, Richard Berndt

Scanning Microscopy

By using the tip of a scanning tunneling microscope (STM) as a local source for electrons (or holes) light emission can be excited from metals, semiconductors and molecules. Using this technique, it is possible to combine the high spatial resolution of STM with optical techniques. We review results obtained using a variety of modes of measurements including fluorescence spectroscopy, isochromat spectroscopy and simultaneous mapping of photon emission and surface topography. In spatial maps of the photon emission, clear contrasts are observed with lateral resolutions below 1 nm which are related to the geometric and electronic structure of the sample and …

Discovery Of The Federally Endangered Freshwater Mussel, Epioblasma Obliquata Obliquata (Rafinesque, 1820) (Unionidae), In Ohio, Michael A. Hoggarth, Daniel L. Rice, Diana M. Lee

Biology and Earth Science Faculty Scholarship

Discovery of the purple catspaw, Epioblasma obliquata obliquata, in Killbuck Creek, Coshocton County, OH, is reported. This subspecies of unionid mollusc was thought to have been extirpated from the state in the mid to late 1800s and was known only from two nonreproductive populations in Kentucky and Tennessee. The mussel was thought to be on the verge of extinction. Fifteen living and 23 dead specimens of this subspecies were collected in September 1994 from Killbuck Creek. This is the largest known population of this rare subspecies and it is the only known population to currently support breeding individuals. It is …

Pattern Of Disease After Murine Hepatitis Virus Strain 3 Infection Correlates With Macrophage Activation And Not Viral Replication, M. Pope, O. Rotstein, E. Cole, S. Sinclair, Rebecca D. Parr, B. Cruz, R. Fingerote, S. Chung, R. Gorczynski, L. Fung, J. Leibowitz, Y. S. Rao, G. Levy

Faculty Publications

Murine hepatitis virus strain (MHV-3) produces a strain-dependent pattern of disease which has been used as a model for fulminant viral hepatitis. This study was undertaken to examine whether there was a correlation between macrophage activation and susceptibility or resistance to MHV-3 infection. Peritoneal macrophages were isolated from resistant A/J and susceptible BALB/cJ mice and, following stimulation with MHV-3 or lipopolysaccharide (LPS), analyzed for transcription of mRNA and production of interleukin-1 (IL-1), tumor necrosis factor alpha (TNF-alpha), transforming growth factor beta (TGF-beta), mouse fibrinogen-like protein (musfiblp), tissue factor (TF), leukotriene B4, and prostaglandin E2 (PGE2). Macrophages from BALB/cJ mice produced …

On The Dangers Of Interpopulational Transfers Of Monarch Butterflies, Lincoln P. Brower, Linda S. Fink, Andrew Van Zandt Brower, Kingston L. H. Leong, Karen Oberhauser, Sonia Altizer, Orley Taylor, Daniel Vickerman, William H. Calvert, Tonya Van Hook, Alfonso Alonso-Mejia, Stephen B. Malcolm, Denis F. Owen, Myron P. Zalucki

Biological Sciences

No abstract provided.

The Impact Of The New Management Package On Smaller Operators In The Western Rock Lobster Fishery, Ross Gould

Fisheries Management Papers

For the 1993/94 western rock lobster fishing season several new management strategies were introduced. The objective of the changes to the management package was to protect the rock lobster fishery. It was also to provide sufficient breeding stock to ensure viability of the industry. The most significant new measure was a temporary (two seasons) 18 percent pot reduction. Other changes were also made. There were considered sound reasons for reviewing and changing the previous management package. Despite this, some fishermen were critical of the new management package, and claimed that it unfairly disadvantaged smaller operators. Against this background, the Department …

2,4-Dichlorophenoxyacetic Acid-Degrading Bacteria Contain Mosaics Of Catabolic Genes, R. R. Fulthorpe, C. Mcgowan, O. V. Maltseva, William E. Holben, J. M. Tiedje

Biological Sciences Faculty Publications

DNA from 32 2,4-dichlorophenoxyacetic acid (2,4-D)-degrading bacteria from diverse locations was probed with the first three genes of the well-known 2,4-D degradation pathway found in Alcaligenes eutrophus JMP134(pJP4). The majority of strains did not show high levels of homology to the first three genes of the 2,4-D degradation pathway, tfdA, -B, and -C. Most strains showed combinations of tfdA-, B-, and C-like elements that exhibited various degrees of homology to the gene probes. Strains having the same genomic fingerprints (as determined by repetitive extragenic palindromic PCR) exhibited the same hybridization pattern regardless of the geographic origin of the …

Isolation And Analysis Of Nephritic-Producing Immune Complexes In Plasmodium Berghei-Infected Mice, Clarence Lee, Eric Toran

Department of Biology Faculty Publications

A nephritic condition was developed by infecting Swiss Webster albino mice with the malarial parasite Plasmodium berghei NK 65. These animals were tested for urinary protein and the presence of circulating immune complexes using reagent strips and a polyethylene glycol (PEG) precipitation assay. The circulating immune complexes were isolated from the sera using both affinity chromatography and PEG precipitation and from the kidney by acid elution. The isolated complexes were dissociated into their individual components and analyzed by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE). The components of the complexes were transferred to nitrocellulose sheets and probed for the presence of …

The Cytoplasmic Tail Domain Of The Vacuolar Protein Sorting Receptor Vps10p And A Subset Of Vps Gene Products Regulate Receptor Stability, Function, And Localization, Joan Lin-Cereghino, Eric G. Marcusson, Scott D. Emr

College of the Pacific Faculty Articles

VPS10 of Saccharomyces cerevisiae encodes a type I transmembrane receptor protein required for the sorting of the soluble vacuolar hydrolase carboxypeptidase Y (CPY). To characterize the essential structural features and intercompartmental transport itinerary of the CPY receptor, we have constructed mutant forms of Vps10p that alter the carboxyterminal cytoplasmic tail of the protein. In addition, we have analyzed the effect these mutations as well as mutations in several VPS genes have on the function, stability, and localization of Vps10p. Although wild-type Vps10p is very stable over a 3-h chase period, overproduction of Vps10p results in PEP4-dependent degradation of the receptor. …

Cells Are Not Just Bags Of Water: A Personal Appreciation Of The Work Of Dr. Brij L. Gupta And His Contribution To Biological X-Ray Microanalysis, Alice Warley

Scanning Microscopy

This paper surveys the contribution made by the work of Dr. B.L. Gupta to the science of biological X-ray microanalysis. A brief biographical sketch of Brij's early years is given, this is followed by considerations about the models for water transport across epithelia. The ultrastructural and histochemical studies carried out by Brij Gupta and colleagues are reviewed to introduce the historical need for the use of EPXMA for the study of ion and water transport in epithelia. The outstanding contribution made by Brij Gupta's work in this field is outlined, and his understanding of the subcellular distribution ions in other …

The Effect Of Ionizing Irradiation On Type I Collagen Of The Tail In Growing Mice: A Histology And Electron Microscopy Study, M. Q. Yang, E. Kjellén, C. H. Håkansson, M. Palmegren

Scanning Microscopy

In order to examine the effect of radiation on growing tissue, especially the fibroblasts and their end-product, the collagen fibres, tails from 24 mice were irradiated at an age of 8 days with 20 Gy and 30 Gy (>°Co). Tails from 18 animals served as controls. Six mice from each group were sacrificed on day 8, 20 and 30. Transmission electron microscopy was used to examine the fibroblasts and the collagen fibrils. Non-irradiated fibroblasts had a nucleus rich in chromatin and an abundant endoplasmic reticulum with cistemae and condensing vacuoles.

On day 20, approximately 50 % , and on …

Elicitor-Induced Resistance In Tomato Plants Against Fungal Pathogens: Ultrastructure And Cytochemistry Of The Induced Response, Nicole Benhamou

Scanning Microscopy

The introduction of gold cytochemistry in plant pathology has opened new avenues for accurately localizing molecules thought to play important biological functions in the plant metabolism. In an effort to understand the process associated with the induction of plant disease resistance, we investigated the effect of fungal elicitors on the cellular response of tomato root tissues during attack by Fusarium oxysporum f. sp. radicis-lycopersici, the causal agent of tomato crown and root rot. Chitosan was found to induce marked morphological and ultrastructural changes in the fungus grown in pure culture, including cytoplasm aggregation and abnormal deposition of an amorphous …

Morphological Effects Of Glycosaminoglycans On Calcium Oxalate Monohydrate Crystals, Y. Shirane, Y. Kurokawa, Y. Sumiyoshi, S. Kagawa

Scanning Microscopy

The effects of individual glycosaminoglycan (GAG) species on calcium oxalate monohydrate (COM) crystal growth were studied in vitro by the observation of crystal morphology grown in a supersaturated calcium oxalate solution in the presence of GAGs using optical and scanning electron microscopes. GAGs affected the morphology of COM crystals differently depending on the species. The growth rates of the crystals formed in the presence of chondroitin-6-sulfate (ChS-C) were higher in length and lower in width and thickness than those of control crystals. The incorporation of dermatan sulfate or heparin into the crystals formed in the presence of these GAGs was …

Vitamin B6 Deficiency And Galactose Induced Alterations In Morphology And Osmotic Fragility Of Rat Erythrocytes, P. Kaul, H. Sidhu, S. K. Thind, S. K. Sharma, R. Nath

Scanning Microscopy

Recently, red blood cells have been investigated mainly for alterations in ion transporting capacity, membrane bound enzymes or modifications in the structure of its individual constituents in clinical and experimental urolithiasis. However, the implication of such modifications on the physical state or morphology of cells has not been investigated. Scanning electron microscopic studies performed in vitamin B₆ deficient and/or galactose fed rat (established hyperoxaluric models) erythrocytes, showed the presence of large number of stomatocytes, spherocytes and other variously deformed cells as compared to discocytic cells seen in normal control group. These changes in shape were in concurrence with red …

The Formation Of Filopodia-Like Protrusions During Preparation Of Cell Suspensions For Scanning Electron Microscopy, Yuri A. Rovensky

Scanning Microscopy

The standard preparation of cell suspensions (e.g., blood cells, cell suspensions derived from monolayer cultures or from various tissues, etc.) for scanning electron microscopy (SEM) includes fixation of the cells in suspension and subsequent dehydration and critical point drying (CPD) of the cells after their preliminary attachment to the special substrata. In the course of the SEM examination of cell suspensions of various origins, unusual morphological cell surface structures, filopodia-like protrusions (FLP), were consistently detected in 3-20% of the cells in the populations. FLP can be effectively observed only by using a stage tilt angle of no less than 30°. …

Shoot Structure Of Boschniakia Hookeri Walpers (Orobanchaceae), John Leland Babur

Dissertations and Theses

Boschniakia hookeri Walpers has been found to parasitize the roots of Gaultheria shallon Pursh, Arctostaphylos uva-ursi (l.) Spreng, and Vaccinium ovatum Pursh, all members of the Ericaceae. This is the first documented report of the parasitism of Vaccinium ovatum. The subterranean shoot of B. hookeri originates endogenously from the perennial tubercle of the parasite. The shoot has an eustele, composed of collateral vascular bundles, arranged in four composite fronts and separated by four wide 'leaf gaps.' Pits on metaHylem vessels range from nearly circular to laterally elongated. Rll vessel members have simple perforations. Ouerall, the Hylem of subterranean shoots contained …

Comparative Analysis Of Patch Lesions In The Chick Inner Ear Following Acoustic Trauma: Optical Versus Scanning Electron Microscopy, H. J. Adler, J. Mantooth, Y. Raphael

Scanning Microscopy

Neonatal chicks were exposed to an octave band noise with a center frequency of 1.5 kHz at 116 dB SPL for 4 hours. Seven days following overstimulation, the birds were sacrificed. Their basilar papillae were re-moved, fixed in 4% paraformaldehyde, and processed in two steps. First, the ears were immunostained with a supernatant of mouse anti-tectorial membrane antibodies, followed by a diaminobenzidine process. Examinations of the papillae under an optical stereo microscope revealed a patch site with a partially regenerated tectorial membrane (referred to as the honeycomb).

After the optical studies, the same ears were post-fixed in 1% osmium tetroxide, …

Consistency In Calibrated Backscattered Electron Images Of Calcified Tissues And Minerals Analyzed In Multiple Imaging Sessions, E. G. Vajda, J. G. Skedros, R. D. Bloebaum

Scanning Microscopy

Pure metal standards have been used to calibrate the operating environment in quantitative backscattered electron (BSE) imaging of mineralized tissue, allowing comparisons to be made between various mineralization states of bone at the microscopic level. It has not previously been documented that calibration procedures produce consistent, reliable results over multiple imaging sessions. In this study, BSE images were obtained from bones, pure metals, and a naturally occurring mineral in multiple imaging sessions over a six day period. The graylevel histogram profile (GHP) from each specimen was analyzed for changes in the shape and relative placement on the graylevel spectrum. Computer …

Backscattered Electron Imaging And Energy-Dispersive X-Ray Microanalysis Studies Of Evidence For Calcium Salt Heterogeneity In Fifteen Gallstones From An Elderly Human, Tetsuo Kodaka, Ryoichi Mori, Kazuhiro Debari, Reiji Takiguchi, Shohei Higashi

Scanning Microscopy

We examined 15 variably-sized gallstones, taken from an elderly male, by backscattered electron imaging and energy-dispersive X-ray microanalysis to learn the structural and distribution patterns of gallstone calcium (Ca-) salts. Of the 13 cholesterol-rich stones, nine stones had peripheral concentric layers of Ca-carbonate, whereas 2 stones had peripheral layers of Ca-phosphate. No Ca-salts were detected from 2 cholesterol-rich stones. The 2 stones containing Ca-phosphate had no Ca-salt cores, whereas the stones containing Ca-carbonate were separated into 3 different types: two stones with a Ca-carbonate core, four stones with several Ca-bilirubinate cores of glass-like structure, and 3 stones lacking Ca-salt cores. …

Confocal Laser Scanning Microscopic Studies On Alveolar Bone Remodeling With Orthodontic Tooth Movement And Retention, H. Yagishita, S. Iwatsubo, T. Aoba

Scanning Microscopy

Alveolar bone reconstruction in growing dog during the retention period following orthodontic tooth movement was studied. Three beagle dogs (8-10 kg body weight, about one-year-old) were used and two of the animals were subjected to histological observation. The upper 2nd and lower 3rd premolars on both sides were extracted prior to the orthodontic treatments. After a healing period of one month, the upper 3rd premolar and the lower 4th premolar on the right side were moved mesially with a conventional orthodontic force for 8 weeks, and then retained in their new position for 4 weeks. The contralateral corresponding premolars were …

Analysis Of Glycosaminoglycans Induced In Newly Formed Calcium Oxalate Crystals Using An Undiluted Urine System, Koji Suzuki, Ryuzo Tsugawa

Scanning Microscopy

The aim of this study was to examine the effect of sodium pentosan polysulfate (SPP) in an undiluted urine system and to study its relative affinity to calcium oxalate (CaOx) crystals in the presence or absence of heparan sulfate (HS). CaOx crystals were induced with an overload of oxalate above the metastable limit in spun and filtered urine (SF) and ultrafiltered urine (UF). Then, the crystals were dissolved with EDTA (ethylene-diaminetetraacetic acid), electrodialysed and lyophilized. The polyanions, HS or SPP were added to the UF prior to the addition of oxalate. Polyanions in crystal matrices were examined by cellulose acetate …

Improved Methods For Preserving Macromolecular Structures And Visualizing Them By Fluorescence And Scanning Electron Microscopy, Paul B. Bell Jr., Barbara Safiejko-Mroczka

Scanning Microscopy

To determine the optimal procedures to preserve cytoskeletal and other macromolecular structures for microscopic studies we have evaluated the effects of various methods to extract cultured cells. In this report, we compare results using different fixatives, crosslinking reagents, and permeabilization methods on (1) the labeling of cells for fluorescence microscopy with phalloidin or antibody against tubulin; and (2) the morphological preservation of macromolecular structures for scanning electron microscopy. Maximal labeling of F-actin with phalloidin was obtained by fixing cells in 4% para formaldehyde (PFA) and labeling the unextracted cells with methanolic phalloidin, whereas maximal labeling of tubulin required prefixation with …

A Trade-Off Invariant Life-History Rule For Optimal Offspring Size, Eric Charnov, Jerry Downhower

Biology Faculty & Staff Publications

Optimization models have been widely and successfully used in evolutionary ecology to predict the attributes of organisms. Most such models maximize darwinian fitness (or a component of fitness) in the face of trade-offs and constraints; the numerical results usually depend on the exact form of the trade-offs/constraints. Here we report the first (to our knowledge) numerical optimum for life-history evolution which is independent of the details of the underlying trade-off, for a large array of trade-off forms. The rule is that at small litter sizes, the range in offspring size is inversely proportional to the size of the litter. Details …

West Coast Rock Lobster Fishery Management Plan 1995 - Draft For Public Comment, M. Moran

Fisheries Management Papers

The purpose of this management plan is to regulate fishing for rock lobsters (Family Palimuridae) in waters off the west coast of Western Australia such that the breeding stock of rock lobsters is maintained at a level known to have generated adequate recruitment of young lobsters in the past. This management plan does not constitute a change in the management arrangements for the rock lobster fishery. It essentially replaces the West Coast Rock Lobster Limited Entry Fishery Notice 1993 made under the Fisheries Act 1905 and makes the required changes to wording and structure necessitated by the proclamation of the …

Bag And Size Limit Fishing Regulations From Around Australia - Current Information As At 1 July, 1995 - Third Australasian Fisheries Managers Conference, Rottnest Island, Wa, F. B. Prokop

Fisheries Management Papers

This paper was originally prepared for the first National Fisheries Managers Conference in 1993. It is now updated and includes the current bag and size limits from around Australia as at 1 July, 1995. It is fairly obvious from this paper that there is a need for more cooperation between the states, particularly for species which have wide distributions. However, regional solutions can be a good approach for specific management needs, while general rules can be made more consistent in a number of cases.

Mutations In Rad27 Define A Potential Link Between G₁ Cyclins And Dna Replication, Elizabeth Ann Vallen, Frederick R. Cross , '78

Biology Faculty Works

The yeast Saccharomyces cerevisiae has three G1 cyclin (CLN) genes with overlapping functions. To analyze the functions of the various CLN genes, we examined mutations that result in lethality in conjunction with loss of cln1 and cln2. We have isolated alleles of RAD27/ERC11/YKL510, the yeast homolog of the gene encoding flap endonuclease 1, FEN-1.cln1 cln2 rad27/erc11 cells arrest in S phase; this cell cycle arrest is suppressed by the expression of CLN1 or CLN2 but not by that of CLN3 or the hyperactive CLN3-2. rad27/erc11 mutants are also defective in DNA damage repair, as determined by their increased sensitivity to …

Fertility Effects Of Genes Causing Reproductive Isolation Inferred From Three-Way Hybrids In Phacelia, Helen Zhujun Hou

Electronic Theses and Dissertations

Prior studies of reproductive isolation among three varieties of Phacelia dubia have found that gene loci encoding isozymes of glutamate oxaloacetate transaminase (GOT) were associated with hybrid sterility. In the first part of this study, I generated three-way hybrids to determine if the genetic or chromosomal region linked to GOT encoding loci has major effects on hybrid sterility and if any observed effects were similar in different genetic backgrounds. In three-way crosses, F1 hybrids of two varieties were crossed to a third variety. Fertilities of three-way hybrids were estimated and their GOT genotypes were ascertained by starch gel electrophoresis. A …

Cell Wall Degrading Enzymes Produced By The Phytopathogenic Fungus Phymatotrichum Omnivorum, Jacobo Ortega

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

The extracellular plant cell wall degrading enzymes of Phymatotrichum omnivorum and the effect of different carbon sources on the production of these enzymes were investigated. Cellobiohydrolase, endoglucanase and xylanase activities were detected in fluids collected from cultures containing sodium carboxymethyl cellulose (CMC) or xylan as carbon sources and enzyme inducers. The highest activities of cellobiohydrolase and xylanase were measured in fluids collected from cultures containing xylan. Results of this study indicate that P. omnivorum constitutively produces small amounts of endoglucanase.

The Role Of Pulmocutaneous Baroreceptors In The Control Of Lymphatic Heart Rate In The Toad Bufo Marinus, Dane Alan Crossley Ii

Dissertations and Theses

The present study documents that baroreceptors located in the pulmocutaneous artery (PCA) are key components in control of lymph heart rate in amphibians. A negative feedback control loop exists between arterial pressure and lymphatic heart rate. The recurrent laryngeal nerve (rLN), which innervates the PCA baroreceptors, transmits information on arterial pressure to integration centers in the central nervous system. Lymphatic heart rate (LHR) is reduced as a result of increases in arterial pressure. This loop was determined using three experimental protocols. First, the correlation between LHR reduction and hormonally induced vasoconstriction was determined. Increases in arterial pressure due to pressor …

Scanning Electron Microscopy And Energy Dispersive Spectroscopy Analysis Of Calciotraumatic Lines In Rat Labial Dentin After Acute Exposure To Strontium Chloride, Hiroyuki Mishima, Toshiro Sakae, Yukishige Kozawa

Scanning Microscopy

Rats were given strontium chloride (SrCli) intraperitoneally at a dose of 500 mg/kg. The upper incisors were removed after injection of strontium. These incisors were studied by scanning electron microscopy - energy dispersive spectroscopy analysis (SEM-EDS) and light microscopy to examine the calciotraumatic lines of strontium in the rat incisor labial dentin.

At 24 hours after injection of strontium, the calciotraumatic response was observed in the predentin using hematoxylin and eosin (H-E) staining. At 5 days, three layers of calciotraurnatic lines were present in the labial dentin using an H-E staining and backscattered electron imaging in the SEM. The external …

Effects Of Non-Point Nutrient Loading On Planktonic Community Structure And Function In A Great Lakes Coastal Wetland, Brian M. Binion

Morehead State Theses and Dissertations

A thesis presented to the faculty of the College of Science and Technology at Morehead State University in partial fulfillment of the requirements for the Degree of Master of Science in Biology by Brian M. Binion on July 26, 1995.