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Seasonal Steroid Hormone Levels And Their Relation To Reproduction In The Western Diamond-Backed Rattlesnake, Crotalus Atrox (Serpentes: Viperidae), Emily N. Taylor, Dale F. Denardo, David H. Jennings

Biological Sciences

We report seasonal variation in steroid hormone levels in blood samples from free-ranging Western Diamond-backed Rattlesnakes (Crotalus atrox), and the relationship between these hormones and events in the reproductive cycle. At a field site in the Sonoran Desert of south-central Arizona, we collected monthly blood samples over the course of two active seasons from 17 radiotelemetered females, and over three active seasons from 103 randomly encountered males. We used radioimmunoassay to measure plasma levels of 17β-estradiol, progesterone, corticosterone, and testosterone in samples from females, and corticosterone and testosterone in samples from males. Non-reproductive females have consistently low levels …

Bioinformatic Approaches For Objective Detection Of Water Masses On Continental Shelves, Mark A. Moline, Matthew J. Oliver, Scott Glenn, Josh T. Kohut, Andrew J. Irwin, Oscar M. Schofield, Paul W. Bissett

Biological Sciences

As part of the 2001 Hyper Spectral Coupled Ocean Dynamics Experiment, sea surface temperature and ocean color satellite imagery were collected for the continental shelf of the Mid-Atlantic Bight. These images were used to develop a water mass analysis and classification scheme that objectively describes the locations of water masses and their boundary locations. This technique combines multivariate cluster analysis with a newly developed genetic expression algorithm to objectively determine the number of water types in the region on the basis of ocean color and sea surface temperature measurements. Then, through boundary analysis of the water types identified, the boundaries …

Sex–Specific Effects Of Carotenoid Intake On The Immunological Response To Allografts In Guppies (Poecilia Reticulata), Gregory F. Grether, Shinji Kasahara, Gita R. Kolluru, Edwin L. Cooper

Biological Sciences

Rarely are the evolutionary origins of mate preferences known, but, recently, the preference of female guppies (Poecilia reticulata) for males with carotenoid‐based sexual coloration has been linked to a sensory bias that may have originally evolved for detecting carotenoid‐rich fruits. If carotenoids enhance the immune systems of these fishes, as has been suggested for other species, this could explain the origin of the attraction to orange fruits as well as the maintenance of the female preference for orange males. We used the classic immunological technique of tissue grafting to assay a component of the immune response of guppies …

Individual Colour Patches As Multicomponent Signals, Gregory F. Grether, Gita R. Kolluru, Karen Nersissian

Biological Sciences

Colour patches are complex traits, the components of which may evolve independently through a variety of mechanisms. Although usually treated as simple, two-dimensional characters and classified as either structural or pigmentary, in reality colour patches are complicated, three-dimensional structures that often contain multiple pigment types and structural features. The basic dermal chromatophore unit of fishes, reptiles and amphibians consists of three contiguous cell layers. Xanthophores and erythrophores in the outermost layer contain carotenoid and pteridine pigments that absorb short-wave light; iridophores in the middle layer contain crystalline platelets that reflect light back through the xanthophores; and melanophores in the basal …

Serpentine: A Model Habitat For Botanical Research In Sri Lanka, Nishanta Rajakaruna, Alan J. M. Baker

Biological Sciences

Serpentine (ultramafic) outcrops are found in most parts of the world and for many years have attracted the attention of soil scientists and plant biologists alike due to the unusual nature of both the substrate and the life forms they harbour. In this paper, we introduce serpentine outcrops as a model habitat for botanical studies and review preliminary findings of a recently conducted soil and floristic survey of four of the five known serpentine outcrops in Sri Lanka. We hope that this paper will stimulate much-needed studies, both exploratory and experimental, and point to the immediate need for conservation of …

Epidemiology, Pathogenesis, And Prevention Of Foodbome Vibrio Parahaemolyticus Infections, P.S. Marie Yeung, Kathryn J. Boor

Biological Sciences

Since its discovery about 50 years ago, Vibrio parahaemolyticus has been implicated as a major cause of foodborne illness around the globe. V. parahaemolyticus is a natural inhabitant of marine waters. Human infections are most commonly associated with the consumption of raw, undercooked or contaminated shellfish. A few individual V. parahaemolyticus virulence factors, including the thermostable direct hemolysin (TDH) and TDH-related hemolysin (TRH), have been investigated in depth, yet a comprehensive understanding of this organism's ability to cause disease remains unclear. Since 1996, serotype 03:K6 strains have been associated with an increased incidence of gastroenteritis in India and in Southeast …

Effects Of Acid Stress On Vibrio Parahaemolyticus Survival And Cytotoxicity, P.S. Marie Yeung, Kathryn J. Boor

Biological Sciences

For several foodbome bacterial pathogens, an acid tolerance response appears to be an important strategy for counteracting acid stress imposed either during food processing or by the human host. The acid tolerance response enhances bacterial survival of lethal acid challenge following prior exposure to sublethal acidic conditions. Previous studies have revealed relationships between a foodbome pathogen's ability to survive acid challenge and its infectious dose. Vibrio parahaemolyticus is capable of causing gastroenteritis when sufficient cells of pathogenic strains are consumed. This study was designed to characterize acid sensitivities and to compare the effect of sublethal acid exposure (adaptation) on survival …

Recruitment Of The Puf3 Protein To Its Mrna Target For Regulation Of Mrna Decay In Yeast, Wendy Olivas, J. Jackson, S. Houshmandi, Leban Lopez

Biology Department Faculty Works

The Puf family of RNA-binding proteins regulates mRNA translation and decay via interactions with 3' untranslated regions (3' UTRs) of target mRNAs. In yeast, Puf3p binds the 3' UTR of COX17 mRNA and promotes rapid deadenylation and decay. We have investigated the sequences required for Puf3p recruitment to this 3' UTR and have identified two separate binding sites. These sites are specific for Puf3p, as they cannot bind another Puf protein, Puf5p. Both sites use a conserved UGUANAUA sequence, whereas one site contains additional sequences that enhance binding affinity. In vivo, presence of either site partially stimulates COX17 mRNA decay, …

An Unusual Lava Cave From Ol Doinyo Lengai, Tanzania, Donald A. Mcfarlane, Joyce Lundberg, Frederick Belton

WM Keck Science Faculty Papers

A new type of lava cave is described from the summit crater of Ol Doinyo Lengai, a unique active carbonatite volcano in Tanzania. This and other similar caves on Ol Doinyo Lengai are formed by thermal erosion and aqueous dissolution of otherwise solid spatter cones. Meteoritic water and endogenous condensates act to form speleothems of complex mineralogy up to 3 m in length. We propose the new classification of “polygenetic spatter cone cave”.

Changes In Gdnf Protein Content Of Skeletal Muscle Following Involuntary Exercise Are Long Lived, Kyle R. Kinnell, Monica J. Czarnopys, John Spitsbergen

Biological Sciences Faculty and Graduate Student Research

Glial-cell line derived neurotrophic factor (GDNF) is a neurotrophic factor produced by skeletal muscle. GDNF has been shown to be potent survival factor for motor neurons. We have previously shown that GDNF content in skeletal muscle is altered following exercise and GDNF levels 24 hours after the last bout of exercise are significantly different than those measured immediately after exercise. We sought to determine how long after exercise do GDNF protein levels remain altered. We removed extensor digitorum longus (EDL) and Soleus (SOL), 24 hr, 72 hr and 1 week following the last bout of involuntary exercise. Muscles were processed …

Chronological Patterns Of Emergence Of Dragonflies In Carver Pond, Bridgewater, Ma, Chris Haslam

Undergraduate Review

In this study larval skins of dragonflies were collected counted and studied in order to find peaks and patterns of emergence and correlate with environmental factors. One of the most important stages of the life of a dragonfly is the time when it changes from a larval aquatic insect into a flying adult. This stage takes place when the dragonfly emerges out of its skin called the exuvia. Exuvia were collected from two sites at Carver Pond, Bridgewater, Massachusetts to determine differences in species emergence patterns from May 26, 2003 to July 18, 2003 and correlated with environmental conditions. Peak …

An Isotopic Examination Of Cave, Spring And Epigean Trophic Structures In Mammoth Cave National Park, Zacchaeus Greg Compson

Masters Theses & Specialist Projects

AN ISOTOPIC EXAMINATION OF CAVE, SPRING AND EPIGEAN TROPHIC STRUCTURES IN MAMMOTH CAVE NATIONAL PARK

Name: Zacchaeus Greg Compson Date: October 15, 2004 Pages: 56

Directed by: Philip Lienesch, Doug McElroy, Michael Stokes and Richard Bowker

Department of Biology Western Kentucky University

Abstract

High-water events in the Green River result in flow-reversals which flush native and introduced fishes into Mammoth Cave, posing threats to indigenous cave fauna. However, little is known about the trophic interactions between cave and epigean aquatic systems or their connectivity via natural springs. The purpose of this study was to use stable isotopes of C and …

A Method Based On Conserved Multiple Amino Acid Properties To Predict Amino Acid Substitutions Which Maintain The Protein Structure, Avinash M. Baktula

Masters Theses & Specialist Projects

A METHOD BASED ON CONSERVED MULTIPLE AMINO ACID PROPERTIES TO PREDICT AMINO ACID SUBSTITUTIONS WHICH MAINTAIN THE PROTEIN STRUCTURE Avinash M. Baktula September 16, 2004 1-117 Directed by: Claire A. Rinehart, Doug McElroy and Sigrid Jacobshagen Department of Biology Western Kentucky University Proteins often contain several domains, each with a distinct structure. Such domains have evolved as units that, when combined in various arrangements, produce proteins of unique structure. This study was conducted to identify amino acid substitutions that don’t change structure. Amino acid properties which were conserved in proteins with identical structures were used to predict a set of …

Splicing Affects Presentation Of Rna Dimerization Signals In Hiv-2 In Vitro, Jean-Marc Lanchy, Quenna N. Szafran, J. Stephen Lodmell

Biological Sciences Faculty Publications

During retroviral replication, full-length viral RNAs are encapsidated into new virus particles, while spliced RNAs are excluded. The Retroviridae are unique among viruses in that infectious viral particles contain a dimer of two identical genomic RNA strands. A variety of experimental data has suggested that dimerization and encapsidation of full-length viral RNAs are linked processes, although whether dimerization is a prerequisite for encapsidation, or conversely, dimerization follows encapsidation, has not been firmly established. If dimerization was the sole determinant for encapsidation, then spliced viral RNAs might be expected to display a reduced capacity for dimerization, resulting in their exclusion from …

Seed Mass And Morphology In Outcrossing And Selfing Species Of Clarkia (Onagraceae): An Sem Study, Jennifer L. Knies, Veronique A. Delesalle, A. R. Cavaliere

Biology Faculty Publications

Seeds from three pairs of outcrossing-selfing sister taxa from the genus Clarkia (farewell-to-spring, Onagraceae)—Clarkia unguiculata, Clarkia exilis, Clarkia xantiana ssp. xantiana and ssp. parviflora, and Clarkia concinna ssp. concinna and ssp. automixa—were studied to assess the effects of contrasting mating systems on seed mass and seed morphology. For each outcrossing-selfing comparison, the seed mass of the selfing taxon was less than that of the outcrossing taxon. Seed mass typically differed significantly among populations within a taxon. Scanning electron microscopy showed that the seeds from all these taxa share several characteristics: a bullet to shield shape, a reticulate exotesta pattern, presence …

Use Of An Artificial Pond And Marshes By Amphibians And Reptiles In West Virginia, Vanessa A. Dozeman

Theses, Dissertations and Capstones

A farm pond approximately 40 years old located in Wayne County, West Virginia was studied to determine the ingress and egress of amphibians and reptiles. In addition to the pond, 2 small marshes were also examined. The study extended from February 2003 to November 2003. The pond is approximately 36 m long and 38 m wide and is located on a south-facing hillside at 202 m in elevation. A drift fence composed of landscaping cloth was constructed to completely encircle the site. At every 5.15 m, funnel traps were positioned on both sides of the fence. Traps were checked daily …

Calming John Bartram's Passion: Sweden's Scientific Certification Of Philadelphia's Botanist, Robert E. Savage

Biology Faculty Works

No abstract provided.

Construction Of The Bac Library For Biomphalaria Glabrata, Coen Adema

Biomphalaria Genome Initiative

No abstract provided.

The Ecology Of Drift Algae In The Indian River Lagoon, Florida, Julie Lynnae Liss

Electronic Theses and Dissertations

To gain an understanding of the ecology of drift algae in the Indian River Lagoon system along the east coast of central Florida, four questions were addressed: 1) What is the composition and rate of accumulation of drift? 2) How much movement and turnover occurs within drift accumulations? 3) Do growth rates differ for drift versus attached algae? 4) Is there a difference in photosynthetic performance in drift versus attached algal species? Manipulative field and laboratory experiments were conducted to address these questions with the green macroalga Codium decorticatum and the red macroalga Gracilaria tikvahiae. Changes in pigment concentration and …

Foreword, Scott F. Gilbert

Biology Faculty Works

No abstract provided.

Population Genetic Structure In Nolina Brittoniana (Agavaceae), A Plant Endemic To The Central Ridges Of Florida, Rebecca W. Dolan, Rebecca Yahr, Eric S. Menges

Scholarship and Professional Work - LAS

Nolina brittoniana is endemic to the central ridges of peninsular Florida. Its scrub and sandhill habitats have suffered extensive anthropogenic modification. Analysis of isozymes from populations throughout its range revealed less genetic variation than generally reported for endemic plants. Populations were well differentiated, with significant clines in allele frequency along the north-south axis of distribution. Pair-wise F-statistics calculated at four levels of population geographic substructure revealed that current and inferred historical habitat patches had similar genetic structure. We found no evidence of recent bottlenecks or changes in genetic structure due to habitat loss and fragmentation, consistent with populations having always …

Heritability Of Kinship Pheromone In The Beaver: How Is Information About Relatedness Coded?, Lixing Sun, Dietland Muller-Schwarze

Biology Faculty Scholarship

We attempted to estimate the narrow-sense heritability of single compounds and whole profile of the anal gland secretion (AGS) with the regression method using several sets of relatives in the beaver (Castor canadensis). We used GC (gas chromatography) and GC-MS (mass spectrometry) to characterize and quantify chemical compounds in beaver AGS. We found that the heritability of single compounds seemed to be low, whereas the heritability of AGS profile appeared to be moderate. We conclude that many compounds might be involved in the coding of genetic relatedness, which was through a combination of analog and digital coding using …

Take-Off Mechanics In Hummingbirds (Trochilidae), Bret W. Tobalske, Douglas L. Altshuler, Donald R. Powers

Faculty Publications - Department of Biological & Molecular Science

Initiating flight is challenging, and considerable effort has focused on understanding the energetics and aerodynamics of take-off for both machines and animals. For animal flight, the available evidence suggests that birds maximize their initial flight velocity using leg thrust rather than wing flapping. The smallest birds, hummingbirds (Order Apodiformes), are unique in their ability to perform sustained hovering but have proportionally small hindlimbs that could hinder generation of high leg thrust. Understanding the take-off flight of hummingbirds can provide novel insight into the take-off mechanics that will be required for micro-air vehicles. During take-off by hummingbirds, we measured hindlimb forces …

Calcium Activation Of Erk Mediated By Calmodulin Kinase I, John M. Schmitt, Gary A. Wayman, Naohito Nozaki, Thomas R. Soderling

Faculty Publications - Department of Biological & Molecular Science

Elevated intracellular Ca2+ triggers numerous signaling pathways including protein kinases such as the calmodulin-dependent kinases (CaMKs) and the extracellular signal-regulated kinases (ERKs). In the present study we examined Ca2- dependent “cross-talk” between these two protein kinase families. Using a combination of pharmacological inhibitors and dominant- negative kinases (dnKinase), we identified a requirement for CaMKK acting through CaMKI in the stimulation of ERKs upon depolarization of the neuroblastoma cell line, NG108. Depolarization stimulated prolonged ERK and JNK activation that was blocked by the CaMKK inhibitor, STO-609; this inhibition of ERK activation by STO-609 was rescued by expression of a STO-609-insensitive mutant …

Variation In The Antipredator Responses Of Three Sympatric Plethodontid Salamanders To Predator-Diet Cues, Aaron M. Sullivan, Dale M. Madison, Jason R. Rohr

Faculty Publications - Department of Biological & Molecular Science

Organisms may reduce the risk of predation by responding to chemical cues from predators. Recent research shows that many species vary their antipredator response depending on the diet of the predator. We examined the responses of three plethodontid species of salamander (Plethodon cinereus, Eurycea bislineata, and Desmognathus ochrophaeus) to chemical cues from a shared snake predator (Thamnophis sirtalis). At the time of the study, Eurycea bislineata showed overlap in habitat with Plethodon cinereus and Desmognathus ochrophaeus, but Plethodon cinereus and Desmognathus ochrophaeus showed no overlap with one another. Each salamander species was presented with chemical cues from snakes fed Desmognathus …

Temperature-Dependent Oxygen Limitation In Insect Eggs, H. Arthur Woods, Ryan I. Hill

College of the Pacific Faculty Articles

Most terrestrial insect embryos support metabolism with oxygen from the environment by diffusion across the eggshell. Because metabolism is more temperature sensitive than diffusion, embryos should be relatively oxygen-limited at high temperatures. We tested whether survival, development time and metabolism of eggs of a moth, Manduca sexta, were sensitive to experimentally imposed variation in atmospheric oxygen availability (5–50 kPa; normoxia at sea level is 21 kPa) across a range of biologically realistic temperatures. Temperature–oxygen interactions were apparent in most experiments. Hypoxia affected survival more strongly at warmer temperatures. Metabolic rates, measured as rates of CO₂ emission, were virtually insensitive …

Hatching Asynchrony, Survival, And The Fitness Of Alternative Adult Morphs In Ambystoma Talpoideum, Travis J. Ryan

Scholarship and Professional Work - LAS

The mole salamander, Ambystoma talpoideum, exhibits both aquatic (gilled) and terrestrial (metamorphosed) adult morphologies. Previous studies have shown the existence of body-size advantages associated with the terrestrial morph in A. talpoideum and other polymorphic salamanders (e.g., A. tigrinum). However, aquatic adult A. talpoideum mature at a younger age and often breed earlier than terrestrial adults. We tested the hypothesis that early maturation and reproduction in aquatic adults increase fitness (irrespective of body size). We reared larval A. talpoideum in mesocosms and varied the timing of hatching, with early-hatching larvae representing the offspring from early-breeding aquatic adults, and late-hatching larvae representing …

Similarity Of Mammalian Body Size Acrossthe Taxonomic Hierarchy And Across Space And Time, F. A. Smith, J. H. Brown, J. P. Haskell, S. K. Lyons, J. Alroy, E. L. Charnov, T. Dayan, B. J. Enquist, S.K. Morgan Ernest, E. A. Hadly, K. E. Jones, D. M. Kaufman, P. A. Marquet, B. A. Maurer, K. J. Niklas, W. P. Porter, B. Tiffney, M. R. Willig

Biology Faculty Publications

Although it is commonly assumed that closely related animals are similar in body size, the degree of similarity has not been examined across the taxonomic hierarchy. Moreover, little is known about the variation or consistency of body size patterns across geographic space or evolutionary time. Here, we draw from a data set of terrestrial, nonvolant mammals to quantify and compare patterns across the body size spectrum, the taxonomic hierarchy, continental space, and evolutionary time. We employ a variety of statistical techniques including “sib-sib” regression, phylogenetic autocorrelation, and nested ANOVA. We find an extremely high resemblance (heritability) of size among congeneric …

Comparison Of Crenarchaeal Consortia Inhabiting The Rhizosphere Of Diverse Terrestrial Plants With Those In Bulk Soil In Native Environments, Marek K. Sliwinski, Robert M. Goodman

Faculty Work

To explore whether the crenarchaeal consortium found in the rhizosphere is distinct from the assemblage of crenarchaeotes inhabiting bulk soil, PCR-single-stranded-conformation polymorphism (PCR-SSCP) profiles were generated for 76 plant samples collected from native environments. Divergent terrestrial plant groups including bryophytes (mosses), lycopods (club mosses), pteridophytes (ferns), gymnosperms (conifers), and angiosperms (seed plants) were collected for this study. Statistical analysis revealed significant differences between rhizosphere and bulk soil PCR-SSCP profiles (Hotelling paired T2 test, P < 0.0001), suggesting that a distinct crenarchaeal consortium is associated with plants. In general, phylotype richness increased in the rhizosphere compared to the corresponding bulk soil, although the range of this increase was variable. Examples of a major change in rhizosphere (versus bulk soil) PCR-SSCP profiles were detected for all plant groups, suggesting that crenarchaeotes form associations with phylogenetically diverse plants in native environments. In addition, examples of minor to no detectable difference were found for all terrestrial plant groups, suggesting that crenarchaeal associations with plants are mediated by environmental conditions.

Seasonal Use Of An Abandoned Mine And Summer Maternity Roost By Northern Bats (Myotis Septentrionalis), Heather Rae Fraser

Masters Theses

No abstract provided.