Digital Commons Network^™

Capraria Mexicana (Scrophulariaceae) In Cameron County, Texas: Rediscovered In The United States, Alfred Richardson, Ken King

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Two new sites are reported for Capraria mexicana (Scrophulariaceae) in the United States.

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Se reportan dos nuevos sitios para Capraria mexicana (Scrophulariaceae) en los Estados Unidos

Enzyme–Microbe Synergy During Cellulose Hydrolysis By Clostridium Thermocellum, Yanpin Lu, Yi-Heng P. Zhang, Lee R. Lynd

Dartmouth Scholarship

Specific cellulose hydrolysis rates (g of cellulose/g of cellulase per h) were shown to be substantially higher (2.7- to 4.7-fold) for growing cultures of Clostridium thermocellum as compared with purified cellulase preparations from this organism in controlled experiments involving both batch and continuous cultures. This “enzyme–microbe synergy” requires the presence of metabolically active cellulolytic microbes, is not explained by removal of hydrolysis products from the bulk fermentation broth, and appears due to surface phenomena involving adherent cellulolytic microorganisms. Results support the desirability of biotechnological processes featuring microbial conversion of cellulosic biomass to ethanol (or other products) in the absence of …

Mining The Arabidopsis Thaliana Genome For Highly-Divergent Seven Transmembrane Receptors, Etsuko N. Moriyama, Pooja K. Strope, Stephen O. Opiyo, Zhongying Chen, Alan M. Jones

School of Biological Sciences: Faculty Publications

To identify divergent seven-transmembrane receptor (7TMR) candidates from the Arabidopsis thaliana genome, multiple protein classification methods were combined, including both alignmentbased and alignment-free classifiers. This resolved problems in optimally training individual classifiers using limited and divergent samples, and increased stringency for candidate proteins. We identified 394 proteins as 7TMR candidates and highlighted 54 with corresponding expression patterns for further investigation.

Late Holocene Lake-Level Fluctuations In Walker Lake, Nevada, Usa, Fasong Yuan, Braddock K. Linsley, Stephen S. Howe, Steve P. Lund, John P. Mcgeehin

Biological, Geological, and Environmental Faculty Publications

alker Lake, a hydrologically closed, saline, and alkaline lake, is situated along the western margin of the Great Basin in Nevada of the western United States. Analyses of the magnetic susceptibility (χ), total inorganic carbon (TIC), and oxygen isotopic composition (δ¹⁸O) of carbonate sediments including ostracode shells (Limnocythere ceriotuberosa) from Walker Lake allow us to extend the sediment record of lake-level fluctuations back to 2700 years B.P. There are approximately five major stages over the course of the late Holocene hydrologic evolution in Walker Lake: an early lowstand (> 2400 years B.P.), a lake-filling …

A Lake Restoration Plan For Furman Lake, Lake Restoration Task Force, Wade Worthen, Wes Dripps

Furman Lake Restoration Book Gallery

A twelve page document submitted by The Lake Restoration Task Force. The document lists the members of the task force, gives an overview of the project, the current status at the time of submission, lays out a new vision for the lake, and a plan to improve the environmental integrity of the lake watershed, plus design elements to create a multi-purpose facility. It concludes with a section on the lake as pedagogy and recommendations for moving forward with the master plan.

Adherens Junction-Associated Protein Distribution Differs In Smooth Muscle Tissue And Acutely Isolated Cells, Thomas J. Eddinger, Jessen D. Schiebout, Darl R. Swartz

Biological Sciences Faculty Research and Publications

This study was designed to examine how smooth muscle (SM) cell (SMC) isolation affects the distribution of some adherens junction (AJ) complex-associated proteins. Immunofluorescence procedures for identifying protein distribution were used on gastrointestinal and tracheal SM tissues and freshly isolated SMCs from dogs and rabbits. As confirmed by force measurements, relaxation, Ca²⁺ depletion, and cholinergic activation of SM tissues do not cause significant redistribution of the AJ-associated proteins vinculin, talin, or fibronectin away from the plasma membrane. Unlike SMCs in tissue, freshly isolated SMCs show a variable peripheral/ cytoplasmic vinculin and talin distribution that is not altered by activation. …

African-American Mitochondrial Dnas Often Match Mtdnas Found In Multiple African Ethnic Groups, Bert Ely, Jamie Lee Wilson, Fatimah Jackson, Bruce A. Jackson

Faculty Publications

Mitochondrial DNA (mtDNA) haplotypes have become popular tools for tracing maternal ancestry, and several companies offer this service to the general public. Numerous studies have demonstrated that human mtDNA haplotypes can be used with confidence to identify the continent where the haplotype originated. Ideally, mtDNA haplotypes could also be used to identify a particular country or ethnic group from which the maternal ancestor emanated. However, the geographic distribution of mtDNA haplotypes is greatly influenced by the movement of both individuals and population groups. Consequently, common mtDNA haplotypes are shared among multiple ethnic groups. We have studied the distribution of mtDNA …

Essential Elements Of A Defense-Review Of Dna Testing Results, Dan E. Krane

Biological Sciences Faculty Publications

No abstract provided.

Distance-Based Genome Rearrangement Phylogeny, Li-San Wang, Tandy Warnow, Bernard M.E. Moret, Robert K. Jansen, Linda A. Raubeson

All Faculty Scholarship for the College of the Sciences

Evolution operates on whole genomes through direct rearrangements of genes, such as inversions, transpositions, and inverted transpositions, as well as through operations, such as duplications, losses, and transfers, that also affect the gene content of the genomes. Because these events are rare relative to nucleotide substitutions, gene order data offer the possibility of resolving ancient branches in the tree of life; the combination of gene order data with sequence data also has the potential to provide more robust phylogenetic reconstructions, since each can elucidate evolution at different time scales. Distance corrections greatly improve the accuracy of phylogeny reconstructions from DNA …

Environmental Rearing Conditions Produce Forebrain Differences In Wild Chinook Salmon Oncorhynchus Tshawytscha, R. L. Kihslinger, Sean C. Lema, G. A. Nevitt

Biological Sciences

Recent studies suggest that hatchery-reared fish can have smaller brain-to-body size ratios than wild fish. It is unclear, however, whether these differences are due to artificial selection or instead reflect differences in rearing environment during development. Here we explore how rearing conditions influence the development of two forebrain structures, the olfactory bulb and the telencephalon, in juvenile Chinook salmon (Oncorhynchus tshawytscha) spawned from wild-caught adults. First, we compared the sizes of the olfactory bulb and telencephalon between salmon reared in a wild stream vs. a conventional hatchery. We next compared the sizes of forebrain structures between fish reared …

Textbooks: Expectations Vs. Reality: The Dna Story, William D. Stansfield

Biological Sciences

No abstract provided.

The Effects Of Carotenoid And Food Availability On Resistance To A Naturally Occurring Parasite (Gyrodactylus Turnbulli) In Guppies (Poecilia Reticulata), Gita R. Kolluru, Gregory F. Grether, Sandra H. South, Eric Dunlop, Andrea Cardinali, Linda Liu, Andreah Carapiet

Biological Sciences

Dietary carotenoids have been shown to confer immunological benefits to some species of animals in which males also use these pigments to attract mates. Thus, the potential exists for an allocation trade-off between the sexual and immunological functions of carotenoids. Food availability may also influence immune system function. The present study examined the effects of carotenoid and food availability on the resistance of male guppies (Poecilia reticulata Peters) from four wild populations to the parasite Gyrodactylus turnbulli Harris. Intermediate levels of carotenoid ingestion resulted in the lowest parasite loads, which suggests that carotenoids strengthen parasite resistance at low levels …

Quantitative Profiling Of Arabidopsis Polar Glycerolipids In Response To Phosphorus Starvation. Roles Of Phospholipases Dζ1 And Dζ2 In Phosphatidylcholine Hydrolysis And Digalactosyldiacylglycerol Accumulation In Phosphorus-Starved Plants, Xuemin Wang, Maoyin Li, Ruth Welti

Biology Department Faculty Works

Phosphorus is an essential macronutrient that often limits plant growth and development. Under phosphorus-limited conditions, plants undergo substantial alterations in membrane lipid composition to cope with phosphorus deficiency. To characterize the changes in lipid species and to identify enzymes involved in plant response to phosphorus starvation, 140 molecular species of polar glycerolipids were quantitatively profiled in rosettes and roots of wild-type Arabidopsis (Arabidopsis thaliana) and phospholipase D knockout mutants pldζ1, pldζ2, and pldζ1pldζ2. In response to phosphorus starvation, the concentration of phospholipids was decreased and that of galactolipids was increased. Phospholipid lost in phosphorus-starved Arabidopsis rosettes was replaced by an …

A Scoping Paper : Matters Relevant To The Development Of A Sustainable Allocation And Growout Modul For Western Lobster Pueruli, Department Of Fisheries Western Australia

Fisheries Management Papers

This Scoping Paper has been prepared as a first step in the development of a management framework for a commercial western rock lobster puerulus growout aquaculture industry in Western Australia. The purpose of this Scoping Paper is to identify and scope the issues associated with the development of such an industry and to identify matters which should be considered in the development of a management framework.

Consumers Limit The Abundance And Dynamics Of A Perennial Shrub With A Seed Bank, Matthew J. Kauffman, John L. Maron

Biological Sciences Faculty Publications

For nearly 30 years, ecologists have argued that predators of seeds and seedlings seldom have population-level effects on plants with persistent seed banks and density-dependent seedling survival. We parameterized stage-based population models that incorporated density dependence and seed dormancy with data from a 5.5-year experiment that quantified how granivorous mice and herbivorous voles influence bush lupine (Lupinus arboreus) demography. We asked how seed dormancy and density-dependent seedling survival mediate the impacts of these consumers in dune and grassland habitats. In dune habitat, mice reduced analytical lambda (the intrinsic rate of population growth) by 39%, the equilibrium number of above-ground plants …

Frequent Fire Alters Nitrogen Transformations In Ponderosa Pine Stands Of The Inland Northwest, Thomas H. Gremer, Anna Sala

Biological Sciences Faculty Publications

Recurrent, low-severity fire in ponderosa pine (Pinus ponderosa)linterior Douglas-fir (Pseudotsuga menziesii var. glauca) forests is thought to have directly influenced nitrogen (N) cycling and availability. However, no studies to date have investigated the influence of natural fire intervals on soil processes in undisturbed forests, thereby limiting our ability to understand ecological processes and successional dynamics in this important ecosystem of the Rocky Mountain West. Here, we tested the standing hypothesis that recurrent fire in ponderosa pine/Douglas-fir forests of the Inland Northwest decreases total soil N, but increases N turnover and nutrient availability. We compared soils in stands unburned over the …

Mig-5/Dsh Controls Cell Fate Determination And Cell Migration In C. Elegans, Timothy Walston, Chaobo Guo, Rui Proenca, Mingfu Wu, Michael Herman, Jeff Hardin, Edward Hedgecock

School of Biological Sciences: Faculty Publications

Cell fate determination and cell migration are two essential events in the development of an organism. We identify mig-5, a Dishevelled family member, as a gene that regulates several cell fate decisions and cell migrations that are important during C. elegans embryonic and larval development. In offspring from mig-5 mutants, cell migrations are defective during hypodermal morphogenesis, QL neuroblast migration, and the gonad arm migration led by the distal tip cells (DTCs). In addition to abnormal migration, DTC fate is affected, resulting in either an absent or an extra DTC. The cell fates of the anchor cell in hermaphrodites …

Invasion Through Quantitative Effects: Intense Shade Drives Native Decline And Invasive Success, Kurt O. Reinhart, Julie Gurnee, Reyes Tirado, Ragan M. Callaway

Biological Sciences Faculty Publications

The effects of invasive nonnative species on community composition are well documented. However, few studies have determined the mechanisms by which invaders drive these changes. The literature indicates that many nonnative plant species alter light availability differently than natives in a given community, suggesting that shading may be such a mechanism. We compared light quantity (photosynthetically active radiation, PAR) and quality (red : far-red ratio, R:Fr) in riparian reaches heavily invaded by a nonnative tree (Acer platanoides) to that in an uninvaded forest and experimentally tested the effects of our measured differences in PAR and R:Fr on the …

Year-Round Diet Of The Marsh Rice Rat, Oryzomys Palustris, In Virginia Tidal Marshes, Robert K. Rose, Shannon W. Mcgurk

Virginia Journal of Science

The marsh rice rat, Oryzomys palustris, is the dominant semi-aquatic rodent living in tidal marshes of the Virginia coastal plain. Described as highly carnivorous, this species is known to consume a range of animal foods, including crustaceans, mollusks, fish, and arthropods, as well as some plant foods. Analysis of stomach contents from rice rats collected from Eastern Shore tidal marshes throughout an annual cycle revealed that all 103 stomachs contained dicots, 82 percent had monocots, 61 percent had crabs and insects, and 38 percent had snails. Thirty-eight percent of stomachs contained foods in all five categories, no stomach was …

Minutes: Council Meeting

Virginia Journal of Science

Minutes of the VAS Council meeting Friday May 26, 2006, 8 - 9:40 AM, at Skelton Conference Center Inn, Virginia Tech, Blacksburg VA. Minutes were edited for publication.

Effects Of Long-Term Hypoxia On Enzymes Of Carbohydrate Metabolism In The Gulf Killifish, Fundulus Grandis, Bernard Rees

Biological Sciences Faculty Publications

The goal of the current study was to generate a comprehensive, multi-tissue perspective of the effects of chronic hypoxic exposure on carbohydrate metabolism in the Gulf killifish Fundulus grandis. Fish were held at approximately 1.3 mg l(-1) dissolved oxygen (approximately 3.6 kPa) for 4 weeks, after which maximal activities were measured for all glycolytic enzymes in four tissues (white skeletal muscle, liver, heart and brain), as well as for enzymes of glycogen metabolism (in muscle and liver) and gluconeogenesis (in liver). The specific activities of enzymes of glycolysis and glycogen metabolism were strongly suppressed by hypoxia in white skeletal muscle, …

Spinobulbar Neurons In Lamprey: Cellular Properties And Synaptic Interactions, James F. Einum, James T. Buchanan

Biological Sciences Faculty Research and Publications

An in vitro preparation of the nervous system of the lamprey, a lower vertebrate, was used to characterize the properties of spinal neurons with axons projecting to the brain stem [i.e., spinobulbar (SB) neurons)]. To identify SB neurons, extracellular electrodes on each side of the spinal cord near the obex recorded the axonal spikes of neurons impaled with sharp intracellular microelectrodes in the rostral spinal cord. The ascending spinal neurons (n = 144) included those with ipsilateral (iSB) (63/144), contralateral (cSB) (77/144), or bilateral (bSB) (4/144) axonal projections to the brain stem. Intracellular injection of biocytin revealed that the …

Resistance To Pressure-Induced Dilatation In Femoral But Not Saphenous Artery: Physiological Role Of Latch?, Christopher Call, Shaojie Han, John E. Speich, Thomas J. Eddinger, Paul H. Ratz

Biological Sciences Faculty Research and Publications

We recently determined that the ability of the femoral artery (FA) to maintain higher levels of tonic isometric stress compared with the saphenous artery (SA) was due to differential expression of motor proteins permitting latch-bridge formation in FA and not SA. Arteries under pressure in vivo are not constrained to contract isometrically. Thus the significance of latch-bridge formation in arterial physiology remains to be determined. To address this translational question, diameter changes of pressurized FA and SA were compared. The reduction in lumen diameter induced by KCl at 80 mmHg (isobaric active constriction; IAC) was greater at 30 s than …

An Automated Method For Rapid Identification Of Putative Gene Family Members In Plants, Ronald L. Frank, Ajay Mane, Fikret Erçal

Biological Sciences Faculty Research & Creative Works

Background: Gene duplication events have played a significant role in genome evolution, particularly in plants. Exhaustive searches for all members of a known gene family as well as the identification of new gene families has become increasingly important. Subfunctionalization via changes in regulatory sequences following duplication (adaptive selection) appears to be a common mechanism of evolution in plants and can be accompanied by purifying selection on the coding region. Such negative selection can be detected by a bias toward synonymous over nonsynonymous substitutions. However, the process of identifying this bias requires many steps usually employing several different software programs. We …

Waterfowl Management Plan, Lake Restoration Task Force, Wade Worthen, Wes Dripps

Furman Lake Restoration Book Gallery

A six page document submitted by The Lake Restoration Task Force. The document lists the members of the task force, gives an overview of waterfowl overpopulation at the Furman Lake, goals for the future, and the strategy to solve this problem. The document provides a specific implementation plan and concludes with an assessment of the plan.

Testing An Ecophysiological Mechanism Of Morphological Plasticity In Pupfish And Its Relevance To Conservation Efforts For Endangered Devils Hole Pupfish, Sean C. Lema, Gabrielle A. Nevitt

Biological Sciences

Imperiled species that have been translocated or established in captivity can show rapid alterations in morphology and behavior, but the proximate mechanisms of such phenotypic changes are rarely known. Devils Hole pupfish (Cyprinodon diabolis) are endemic to a single desert pool and are characterized by a small body, large head and eyes, and lack of pelvic fins. To lessen the risk of extinction, additional populations of C. diabolis were established in artificial refuges. Yet, pupfish in these refuges rapidly shifted to a larger body, smaller head and eyes, and greater body depth. Here we examined how food availability …

Low Cell Ph Depresses Peak Power In Rat Skeletal Muscle Fibres At Both 30°C And 15°C: Implications For Muscle Fatigue, Shannon T. Knuth, H. L. W. Dave, Jim R. Peters, Robert H. Fitts

Biological Sciences Faculty Research and Publications

Historically, an increase in intracellular H⁺ (decrease in cell pH) was thought to contribute to muscle fatigue by direct inhibition of the cross-bridge leading to a reduction in velocity and force. More recently, due to the observation that the effects were less at temperatures closer to those observed in vivo, the importance of H⁺ as a fatigue agent has been questioned. The purpose of this work was to re-evaluate the role of H⁺ in muscle fatigue by studying the effect of low pH (6.2) on force, velocity and peak power in rat fast-and slow-twitch muscle fibres …

Reflections On Wallace, Charles H. Smith

DLPS Faculty Publications

An unpublished paper has recently come to light, which shows that even at an early age, Alfred Russel Wallace was bold enough to approach the scientific establishment with his ideas.

Comparative Sequence Analysis And Tissue Localization Of Members Of The Slc6 Family Of Transporters In Adult Drosophila Melanogaster, Matthew S. Thimgan, Jonathan S. Berg, Ann E. Stuart

Biological Sciences Faculty Research & Creative Works

The SLC6 family comprises proteins that move extracellular neurotransmitters, amino acids and osmolytes across the plasma membrane into the cytosol. In mammals, deletion of SLC6 family members has dramatic physiologic consequences, but in the model organism Drosophila melanogaster, little is known about this family of proteins. Therefore, in this study we carried out an initial analysis of 21 known or putative SLC6 family members from the Drosophila genome. Protein sequences from these genes segregated into either well-defined subfamilies, including the novel insect amino acid transporter subfamily, or into a group of weakly related sequences not affiliated with a recognized …

Direct And Correlated Effects Of Selection On Flight After Exposure To Thermal Stress In Drosophila Melanogaster, Robert A. Krebs, Kimberly A. Thompson

Biological, Geological, and Environmental Faculty Publications

To demonstrate how insects may adapt to ecologically relevant levels of heat stress, we performed artificial selection on the ability of Drosophila melanogaster to fly after an exposure to a high but non-lethal thermal stress. Both tolerance and intolerance to heat stress arose very quickly, as only a few generations of selection were necessary to cause significant separation between high and low lines for heat tolerance. Estimates of heritability based on the lines artificially selected for increased flight ability ranged from 0.024 to 0.052, while estimates of heritability based on the lines selected for the inability to fly after heat …