Digital Commons Network^™

Camk-Ii Promotes Beta-Catenin-Dependent Transcription By Binding Flightless-I, Jamie Mcleod

Theses and Dissertations

Transient intracellular elevations of Ca2+ are common signaling mechanisms used to allosterically regulate proteins. One potential target of Ca2+ is Ca2+/calmodulin dependent protein kinase type II (CaMK-II). CaMK-II is a multi-functional protein kinase known to influence cellular pathways such as cell motility and cell cycle progression. Within the cell cycle, CaMK-II promotes the expression of the regulator protein cyclin D1, which is necessary for cell cycle progression. To further understand CaMK-II’s role in cyclin D1 expression, the binding partners of cytosolic CaMK-II were studied using mass spectrometry. Several proteins were identified including β actin, β tubulins, tropomodulin- 3 and Flightless-I. …

Food And Nutrient Intake And Attitudes Among Disadvantaged Groups On The Island Of Ireland: Summary Report, John Kearney, Daniel Mccarthy, Sarah Burke, Barbara Knox, Maria Barton

Reports

No abstract provided.

Poverty, Diet And Health Behaviours: A Quantitative And Qualitative Study Among Young Urbanised Women., Daniel Mccartney

Doctoral

Demographic, socio-economic, attitudinal, dietary, health behavioural and anthropometric data were collected from 221 “disadvantaged” and 74 “advantaged” women aged 18-35 years across Dublin, according to the provisions of a novel socio-economic sampling frame. Internal and external validation techniques established the dietary assessment method of choice and identified “valid” dietary reporters (n=216, 153 disadvantaged, 63 advantaged) among this sample. Five qualitative focus groups (n=5-8 per group) were also conducted among disadvantaged women to examine their diet and health behaviour choices. Lower intakes of fruit and vegetables (172g/d vs. 405g/d, p

Towards Cloning The Clk-3 Gene In Caenorhabditis Elegans, Suchita Umesh Desai

University of Kentucky Master's Theses

Mutations in the clk-1, clk-2, clk-3 and gro-1 genes in Caenorhabditis elegans show alterations in developmental and behavioral timing and lifespan, collectively termed the Clk phenotype. While the clk-1, clk-2, and gro-1 genes have been cloned, clk-3 gene has not been identified. Gene expression changes in clk-3 mutant worms were determined using microarray expression data. I examined genes in the region to which clk-3 gene maps, for strongly reduced expression in the clk-3 mutants and identified thirteen clk-3 candidate genes. RNAi feeding vectors for all these candidate genes were picked and cultured from the RNAi library. …

Functional Characterization Of Upd3 In Drosophila Development, Liqun Wang

University of Kentucky Doctoral Dissertations

The JAK/STAT pathway is a non-receptor tyrosine kinase signaling pathway that is well conserved and highly re-utilized in many mammalian and Drosophila developmental processes. Compared to dozens of ligands and receptors in mammalian JAK/STAT, Drosophila JAK/STAT pathway is simpler with one receptor and three ligands, Upd, Upd2 and Upd3, which have similar amino acid sequences. Previous literature shows that upd and upd2 exhibit the same dynamic striped expression pattern in embryos and have semi-redundant functions during embryogenesis. Do Upd and Upd3 also have redundant functions? To answer this question, the functions of Upd3 in Drosophila development were investigated in this …

Comparative Biology Of Seed Dormancy-Break And Germination In Convolvulaceae (Asterids, Solanales), Kariyawasam Marthinna Gamage Gehan Jayasuriya

University of Kentucky Doctoral Dissertations

The biology of seed dormancy and germination of 46 species representing 11 of the 12 tribes in Convolvulaceae were compared in laboratory (mostly), field and greenhouse experiments. Seeds were tested for kind of dormancy and storage behavior; artificial or simulated natural treatments were applied to break physical dormancy (PY); the initial route of water entry (“water gap”) into seeds was identified; the morphoanatomy of the water gap was compared in seeds of 17 species; ontogenetical differences between water gap and seed coat away from the hilum were described in Ipomoea lacunosa seeds; cycling of sensitivity to dormancy break was elucidated …

The Influence Of Ca2+ Regulation In Synaptic Facilitation Of Motor Nerve Terminals In Crayfish And Drosophila As Well As In The Physiological Regulation Of Larval Drosophila Heart, Mohati Desai-Shah

University of Kentucky Doctoral Dissertations

Intracellular Ca²⁺ ions are highly regulated in animal cells for them to function normally. Since the tight regulation of [Ca²⁺]i is so ubiquitous among cells, it is not surprising that altered function in [Ca²⁺]i regulation is associated with a myriad of disease states in humans. This is particularly evident in pacing myocytes and nerve terminals related to synaptic transmission. A common thread through this dissertation is on the role of three regulators proteins that are common to many cell types. These are the plasmalemmal Na⁺/Ca²⁺ exchanger (NCX), the Ca²⁺-ATPase (PMCA) …

Rapid Dissemination Of Francisella Tularensis And The Effect Of Route Of Infection, S. S. Ojeda, Z. J. Wang, Chris A. Mares, T. A. Chang, Q. Li, E. G. Morris, P. A. Jerabek, J. M. Teale

Biology Faculty Publications (Archived)

Background. Francisella tularensis subsp. tularensis is classified as a Category A bioweapon that is capable of establishing a lethal infection in humans upon inhalation of very few organisms. However, the virulence mechanisms of this organism are not well characterized. Francisella tularensis subsp. novicida, which is an equally virulent subspecies in mice, was used in concert with a microPET scanner to better understand its temporal dissemination in vivo upon intranasal infection and how such dissemination compares with other routes of infection. Adult mice were inoculated intranasally with F. tularensis subsp. novicida radiolabeled with 64Cu and imaged by microPET at 0.25, 2 …

Ecosystem Properties Of Urban Land Covers At The Aboveground-Belowground Interface, Loren B. Byrne, Mary Ann Bruns, Ke Chung Kim

Arts & Sciences Faculty Publications

Understanding of ecological differences among urban land covers can guide the sustainable management of urbanized landscapes for conservation of ecosystem services. The objective of our study was to compare ecosystem properties at the aboveground–belowground interface of three land cover types commonly found in residential landscapes: lawns, bark mulch, and gravel mulch. Using unmowed vegetation as a reference land cover, we measured surface soil variables (to 5 cm depth), CO2 fluxes, and ground temperatures in experimental field plots within 3 years after their creation. Each land cover had a distinctive set of ecosystem properties. Mulched plots had significantly warmer soil and …

Evolutionary Physiology: The Extent Of C4 And Cam Photosynthesis In The Genera Anacampseros And Grahamia Of The Portulacaceae, Lonnie J. Guralnick, Amanda Cline, Monica Smith, Rowan F. Sage

Arts & Sciences Faculty Publications

The Portulacaceae is one of the few terrestrial plant families known to have both C(4) and Crassulacean acid metabolism (CAM) species. There may be multiple origins of the evolution of CAM within the Portulacaceae but the only clear evidence of C(4) photosynthesis is found in members of the genus Portulaca. In the Portulaca, CAM succulent tissue is overlaid with the C(4) tissue in a unique fashion where both pathways are operating simultaneously. Earlier reports have shown that the clade containing the genera Anacampseros and Grahamia may also contain C(4) photosynthetic species similar to the Portulaca, which would indicate multiple origins …

Laboratory Diagnosis Of Clostridium Difficile In The Republic Of Ireland: A Survey Of Irish Microbiology Laboratories., Denise Drudy, F. Fitzpatrick, A. Oza, A. Gilleece, A. M. O’Byrne

Articles

The Health Protection Surveillance Centre (HPSC) established a group to produce national guidelines for Clostridium difficile in Ireland in 2006. A laboratory questionnaire was distributed to determine current C. difficile diagnostic practices. Twenty-nine out of 44 laboratories providing C. difficile diagnostic services to 34 hospitals responded. Twenty-five out of 29 (86%) laboratories processed specimens for C. difficile and four (13.8%) forwarded specimens to another laboratory. Sixteen laboratories (64%) processed specimens for other healthcare facilities. None routinely examined stool for C. difficile, seven (28%) examined specimens only when requested to do so and 18 (72%) used specific selection criteria, including testing …

Update Of Clostridium Difficile Infection Due To Pcr Ribotype 027 In Europe, 2008, Denise Drudy, E. J. Kuijper, F. Barbut, J. S. Brazier

Articles

Since the emergence of a new virulent strain of Clostridium difficile characterised as toxinotype III, North American pulsedfield type 1 (NAP1), restriction-endonuclease analysis group type BI and PCR-ribotype 027 (Type 027), multiple outbreaks have been reported in North America and Europe [1-9]. The increased virulence of C. difficile Type 027 is thought to be associated with a 1 base pair deletion at position 117 of the tcdC gene which leads to an increased or prolonged production of toxins A and B, and possibly the production of a binary toxin [1-3]. However, these virulence factors are not unique for Type 027 …

Polyomaviruses In Pediatric Renal Disease, Julie Moran

Masters

BK virus (BKV) and JC virus (JCV) are ubiquitous in the human population and frequently reactivate during periods of immune suppression. The emergence of polyomavirus-associated diseases among renal and hematopoietic stem cell transplant recipients has highlighted the lack of knowledge of the natural history of BKV and JCV in humans. In the pediatric population, in particular, immune suppressive therapy is commonly used as a treatment for primary renal diseases. To date, there has been limited investigation of polyomavirus reactivation in pediatric patients with renal transplants or with primary renal disease. Given the association of polyomavirus reactivation with the use of …

Organochlorine Pesticide Contamination And Its Potential Effects On Eggshell Characteristics Of Dickcissels (Spiza Americana), Bridget Wall '08

Honors Projects

Dickcissels (Spiza americana) are small, sparrow-like songbirds that nest in grasslands in the U.S. and winter in Venezuela. Fanners in Venezuela intentionally spray dickcissel flocks with organochlorine (DC) and other illegal pesticides in an attempt to kill them when they feed in both rice and sorghum fields. Previous studies have shown that organochlorine (DC) pesticide' contaminants (e.g., DDT) have significantly reduced eggshell thickness in eagles and falcons.. Although DDT was banned in the United States more than twenty years ago, DC compounds and their metabolites still persist in wildlife, possibly resulting in reduced reproductive success and in disrupted endocrine systems …

Distribution Of Bipinnaria And Pilidium In Relation To Physical Structure And Uv-B Light In The Water Column Off Anvers Island, Antarctica, William Jaeckle

Scholarship

Feeding larvae of Antarctic bottom invertebrates have proven to be scarce in the plankton and consequently our knowledge of their ecology is limited. We collected bipinnaria larvae assignable to the genus Odontaster and several types of pilidium larvae of nemertean worms in quantitative net tows taken during the austral spring and summer 1997-1998 and considered their distribution with respect to the density stratification of the water column and the potential exposure to UV-B (λ = 308 nm). The average number of pilidium and bipinnaria larvae in the upper 40 m of the water column was 0.5 ± 1.0 per m3 …

An Expression Profile Of Cadherin-11 In Developing Chicken Embryos, Kacie Flaherty

Dissertations and Theses @ UNI

The properties of cadherin-11 adhesiveness allow it to play a dynamic role in development. Known primarily as a mesenchymal cadherin, cadherin-11 expression may be correlated with morphogenetic events in developing embryos. Although cadherin-11 expression has been studied in the mouse and Xenopus, its expression pattern in the important avian model has not been described. We investigated cadherin-11 's expression profile using a monoclonal antibody in fluorescence immunolocalization, assisted by microwave antigen retrieval; in Hamburger-Hamilton stages 13-22 chicken embryos (approx. 46-96 hrs). Cadherin-11 was expressed in mesenchymal tissue surrounding the eye, pharynx and aortic arches, auditory vesicles, lung buds and stomach, …

Validation Of An Nsp-Based (Negative Selection Pattern) Gene Family Identification Strategy, Ronald L. Frank, Cyriac Kandoth, Fikret Erçal

Biological Sciences Faculty Research & Creative Works

Background: Gene family identification from ESTs can be a valuable resource for analysis of genome evolution but presents unique challenges in organisms for which the entire genome is not yet sequenced. We have developed a novel gene family identification method based on negative selection patterns (NSP) between family members to screen EST-generated contigs. This strategy was tested on five known gene families in Arabidopsis to see if individual paralogs could be identified with accuracy from EST data alone when compared to the actual gene sequences in this fully sequenced genome. Results: The NSP method uniquely identified family members in all …

Analysis Of Leaf Development In Ampelopsis Cordata And Ampelopsis Arborea (Vitaceae), Benjamin Grant Doughan

Dissertations and Theses @ UNI

The genus Ampelopsis is a member of the Vitaceae. Ampelopsis cordata Michx. and Ampelopsis arborea (L.) Koehne are the only two North American species of Ampelopsis. A recent molecular phylogenetic hypothesis placed them into two different clades (Soejima and Wen, 2006). This is correlated with mature leaf morphology, i.e. A. cordata has simple leaves, and A. arborea has compound leaves. My objective was to compare the two species leaf development from initiation to mature form to determine how and at what point their developmental trajectory differentiates and to establish a method to sufficiently track leaf development. Bpi-illumination light microscopy was …

Cell Cycle Analysis Of Atrazine-Treated Human Cells, Daniel Pelzer

Honors Program Theses

Atrazine is the second most-commonly applied herbicide in the United States. Studies have correlated herbicide exposure with a variety of health risks in non-target organisms, including humans and amphibians. Previous work from our laboratory has shown that low-level atrazine exposure inhibits cell growth and may delay progression through the cell cycle.

The purpose of the current study is to determine the effect of environmentally-relevant levels of atrazine on the expression of cyclin D 1, a protein that regulates the G 1 phase of the cell cycle. HepG2 human liver cells were exposed to increasing levels of atrazine (0, 50, 100, …

Series Activity: Watching Wildlife [Iowa Academy Of Science National Wildlife Audio Series], Iowa Academy Of Science

Open Educational Resources

Observing wildlife can be fun whether you are at one of Iowa’s National Wildlife Refuges, a local park or your own back yard. Make watching wildlife a hobby and you will begin to recognize habits and patterns in the actions of the wildlife around you. You might be able to predict when certain wildlife will come to an area to feed, the sounds a bird makes when attempting to protect its young or what will trigger a rabbit to freeze in place. You’ll also be practicing the skills scientists use to make their observations: comparing and contrasting, measuring, counting and …

Evaluating Salivary Alpha-Amylase As A Biomarker Fro Stress, Denise L. Alfano

Seton Hall University Dissertations and Theses (ETDs)

.

Evaluation Of Cortisol And Dhea As Biomarkers For Stress, Jennifer A. Smith

Seton Hall University Dissertations and Theses (ETDs)

.

An Embarrassment Of Riches: The Enzymology Of Rna Modification, Dirk Iwata-Reuyl

Chemistry Faculty Publications and Presentations

The maturation of transfer RNA (tRNA) involves extensive chemical modification of the constituent nucleosides and results in the introduction of significant chemical diversity to tRNA. Many of the pathways to these modified nucleosides are characterized by chemically complex transformations, some of which are unprecedented in other areas of biology. To illustrate the scope of the field, recent progress in understanding the enzymology leading to the formation of two distinct classes of modified nucleosides, the thiouridines and queuosine, a 7-deazaguanosine, is reviewed. In particular, recent data validating the involvement of several proposed intermediates in the formation of thiouridines are discussed, including …

Stressor- And Corticotropin Releasing Factor-Induced Reinstatement And Active Stress-Related Behavioral Responses Are Augmented Following Long-Access Cocaine Self-Administration By Rats, John R. Mantsch, David A. Baker, David M. Francis, Eric S. Katz, Michael A. Hoks, Joseph P. Serge

Biomedical Sciences Faculty Research and Publications

Rationale Stressful events during periods of drug abstinence likely contribute to relapse in cocaine-dependent individuals. Excessive cocaine use may increase susceptibility to stressor-induced relapse through alterations in brain corticotropin-releasing factor (CRF) responsiveness.

Objectives This study examined stressor- and CRF-induced cocaine seeking and other stress-related behaviors in rats with different histories of cocaine self-administration (SA).

Materials and methods Rats self-administered cocaine under short-access (ShA; 2 h daily) or long-access (LgA; 6 h daily) conditions for 14 days or were provided access to saline and were tested for reinstatement by a stressor (electric footshock), cocaine or an icv injection of CRF and …

The Role Of Causal Processes In The Neutral And Nearly Neutral Theories, Michael Dietrich, Roberta L. Millstein

Dartmouth Scholarship

The neutral and nearly neutral theories of molecular evolution are sometimes characterized as theories about drift alone, where drift is described solely as an outcome, rather than a process. We argue, however, that both selection and drift, as causal processes, are integral parts of both theories. However, the nearly neutral theory explicitly recognizes alleles and/or molecular substitutions that, while engaging in weakly selected causal processes, exhibit outcomes thought to be characteristic of random drift. A narrow focus on outcomes obscures the significant role of weakly selected causal processes in the nearly neutral theory.

Role Of Microtubules In Budding Yeast Cytokinesis, Su Young Park

Masters Theses

"Cytokinesis is an important step to finish cell cycle events and separate into two daughter cells. This event is driven by actomyosin ring contraction. In budding yeast, the mitotic exit network (MEN) controls completion of ana/telophase by signaling events. Bub2 is a mitotic exit network regulator and binds to Tem1p which is an important component in MEN. Mad2 is a component of a separate spindle checkpoint. Mad2 dependent pathway prevents the metaphase to anaphase transition under spindle damage. Because yeast cells have cell walls, septum formation follows actin ring contraction. Here it was investigated how microtubule defects affect cytokinesis in …

Failure To Replicate Evidence Of Decapod Crustacean Nociception, Sakshi Puri, Zen Faulkes

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Introduction Here, we attempt to replicate their experiments with two other species of decapod crustaceans that bracket P. elegans phylogenetically: white shrimp (Litopenaeus setiferus) and Louisiana red swamp crayfish (Procambarus clarkii). Litopenaeus setiferus have a similar ecology to prawns. Procambarus clarkii is widely used in the study of neurobiology, and would be an excellent candidate for further neurophysiological studies.

Discussion We found no behavioral evidence of nociception in either L. setiferus or P. clarkii. This outcome contrasts sharply with results that indicated P. elegans had nociception (Barr et al. 2007).

Neptunia Plena (Fabaceae: Mimosoideae) Rediscovered In Texas, Alfred Richardson, Ken King

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

On October 17, 1938, Robert Runyon collected a specimen of Neptunia plena from a shallow pond south of Armstrong in Kenedy County, Texas. No subsequent collections from Texas have been reported . It was assumed that it was not a permanent member of our flora. On October 27, 2007, a population of N. plena was found near the same locality.

-

El 17 de octubre de 1938, Robert Runyon recogió un espécimen de Neptunia plena de una charca somera de Armstrong en el condado de Kenedy, Tejas. No se ha encontrado ninguna colección posterior de Tejas. Fue asumido que no …

Additions To The Breeding Avifauna Of The Lower Rio Grande Valley Of Texas, Timothy Brush

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

The breeding avifauna of the Lower Rio Grande Valley (LRGV) of Texas has experienced many changes during the 20th century, primarily because of declines in native habitats due to land being converted to agriculture and urban habitats. This paper summarizes changes in breeding avifauna from 2003–2007 in the area. Breeding has been confi rmed for Cooper’s Hawk (Accipiter cooperii), Eurasian Collared-Dove (Streptopelia decaocto), and Mangrove Yellow Warbler (Dendroica petechia oraria) for the fi rst time, and for Gray-crowned Yellowthroat (Geothlypis poliocephala) and Ferruginous Pygmy-Owl (Glaucidium brasilianum) after periods of apparent absence. Short-tailed Hawk (Buteo brachyurus) is a possible breeder, based …

Retinal Tissue Engineering Using Mouse Retinal Progenitor Cells And A Novel Biodegradable, Thin-Film Poly(E-Caprolactone) Nanowire Scaffold, Stephen Redenti, Sarah Tao, Jing Yang, Ping Gu, Henry Klassen, Sunita Saigal, Tejal Desai, Michael J. Young

Publications and Research

Retinal progenitor cells (RPCs) can be combined with nanostructured polymer scaffolds to generate compos- ite grafts in culture. One strategy for repair of diseased retinal tissue involves implantation of composite grafts of this type in the subretinal space. In the present study, mouse retinal progenitor cells (RPCs) were cultured on laminin- coated novel nanowire poly(e-caprolactone)(PCL) scaf- folds, and the survival, differentiation, and migration of these cells into the retina of C57bl/6 and rhodospsin −/−mouse retinal explants and transplant recipients were analyzed. RPCs were cultured on smooth PCL and both short (2.5μm) and long (27μ m) nanowire PCL scaffolds. Scaffolds with …