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Evaluating The Illinois Stream Valley Segment Model As An Effective Management Tool, Stephen S. Warrner

Masters Theses

Stream habitat assessment procedures have been used to monitor logical potential, habitat restoration, and determine anthropogenic impacts on streams. In the past, the Illinois Department of Natural Resources (IDNR) and the Illinois Natural History Survey (INHS) have determined which stream reaches to sample habitat quality based on historical data, accessibility, and whether or not a reach is representative of an area. To develop a consistent and unbiased procedure for choosing sampling locations, the IDNR and INHS have proposed a technique by which watersheds are divided into homogeneous stream segments called valley segments. Valley segments within each watershed are determined by …

Spatial And Ecological Patterns Of Tent Location In The Eastern Tent Caterpillar, Malacosoma Americana (Lepidoptera:Lasiocampidae), Jennifer Pleasant

Masters Theses

The eastern tent caterpillar, Malacosoma americanum (Fabricius) (Lepidoptera: Lasiocampidae) is a widely studied social caterpillar. The nests (i.e. tents) of the tent caterpillar are most frequently found on Black Cherry trees (Prunus serotina). However, dispersions of tents are often clumped with one cherry tree having five or more tent caterpillar nests in it and another cherry tree 3 meters away having only one nest, or none at all. I tried to determine why this happens. Because of the short field season, much of the research on the caterpillars has been done in the laboratory. I tried to determine host selection …

A Survey Of Carrion And Burying Beetles (Coleoptera:Silphidae) In Mchenry County, Illinois, David Suhrbur

Masters Theses

This study compared the occurrence of beetles in the family Silphidae using historical collection records with that of field collections from five different sites within McHenry County. The five sites include: Glacial Park, Woodstock, Silver Creek, Rush Creek, and Coral Woods. Historically, 11 known silphid species have been found in McHenry County, compared with seven species found during this study' collection period.

Percentages of silphid species at each site was calculated, as well as total number of individuals sampled, and two indices of diversity (Shannon-Weiner and Simpson's) were applied to both current and historical collection data. The historical collection (when …

Movement Patterns And Feeding Behavior Of The Limpet Tectura Testudinalis (Müller) Along The Mid-Maine Coast, Joshua Lord

Honors Theses

Tectura testudinalis is a limpet that lives in the mid-intertidal zone along the coast of Maine and grazes on a variety of encrusting algae. A previous study asserted that T. testudinalis preferred to feed and rest on the encrusting alga Clathromorphum circumscriptum and that this species of limpet displayed homing behavior. However, I show that T. testudinalis does not home or return to any specific substrate while resting. Conclusive evidence was found for nocturnal movement. I show that C. circumscriptum was the preferred food source for this limpet, closely followed by Hildenbrandia rubra, another encrusting alga. Field and lab experiments …

Recovery And Restoration Of The Seagrass Halodule Wrightii After Boat Propeller Scar Damage In A Pole-Troll Zone In Mosquito Lag, Katherine Grablow

Electronic Theses and Dissertations

This study combined documentation of four boat propeller scar types in Halodule wrightii seagrass beds in Mosquito Lagoon, Florida with manipulative field experiments to document scar recovery times with and without restoration. Scar types ranged from the most severe scar type (Type 1) with trench formation which had no roots or shoots in the trench, to the least severe (Type 4) scars that had no depth, intact roots and shoots shorter than the surrounding canopy. For 110 measured existing scars, the frequency of each scar type was 56% for Type 1, 10% for Type 2, 7% for Type 3, and …

Prevalence And Severity Of Fibropapillomatosis In Juvenile Green Turtles (Chelonia Mydas) In Three Habitats On Florida's Eas, Kelly Borrowman

Electronic Theses and Dissertations

Fibropapillomatosis (FP) is a tumor-forming disease mainly found in juvenile green turtles (Chelonia mydas) inhabiting Florida's east coast. Despite increased research on the herpes virus that putatively causes it, long-term assessment is still needed of the distribution and severity of FP. Using the decades-long database compiled by the University of Central Florida Marine Turtle Research Group, I determined FP severity and distribution at three different sites: Indian River Lagoon (IRL), Sabellariid Worm Reef (SWR) and Trident Submarine Basin (TSB). Fibropapillomatosis occurred in > 50% of IRL turtles, 18% of SWR turtles and <1% of TSB turtles. Regression of FP tumors was correlated with its prevalence, i.e. when and where FP was common, tumor regression was common. The probability of a turtle being non-afflicted or mildly afflicted increased with both increasing straight-line carapace length (SCL) and increasing relative body condition (residuals of log body mass versus log SCL). Mean annual growth rates of IRL and SWR turtles did not vary with FP severity; however, mean annual growth rates in IRL (1.10 cm/y) were significantly higher than in SWR (1.05 cm/y) and TSB (1.04 cm/y). Annual apparent survival estimates for IRL and TSB turtles were 0.72 and 0.73, respectively, and were constant over time. Even with increased prevalence of FP, annual apparent survival estimates were constant and similar to survival estimates of juvenile green turtles in areas without FP. In IRL, survival rates among FP Categories 0, 1 and 2 were similar (0.74, 0.74 and 0.81 respectively) and lower only for FP Category 3 (0.63). Thus, while FP occurred in > 50% of turtles in some Florida east coast populations, …

Control Of Stomatal Formation In Arabidopsis Thaliana Inflorescence Stem, Nalini Odapalli

Electronic Theses and Dissertations

Stomata are cellular structures that control water loss and gas exchange through the plant epidermis. Stomata arise from special stem cells called meristemoids through a series of programmed asymmetric divisions that are controlled by cell signaling, or via multitude of regulatory pathways and intercellular communication between epidermal cells. In Arabidopsis thaliana, stomata are spaced non-randomly in the epidermis by cell-cell signaling of the receptor-like protein TOO MANY MOUTHS (TMM) as well as other proteins. Point mutation of the TMM gene prevents the development of stomata in some tissues like inflorescence stems. Investigation of tmm mutant stems showed that self-renewing stem …

Social Grouping Behaviors Of Captive Female Hippopotamus Amphibius, Tracy Blowers

Electronic Theses and Dissertations

Levels of sociality vary depending on the costs and benefits associated with grouping behavior. Grouping species form either ephemeral aggregations due to resource availability, or structured groups based on familiarity of individuals. Because there are different costs and benefits associated with different types of groups, it is important to understand more about group structure before making predictions about specific behaviors. Female Hippopotamus amphibius are known to aggregate in the wild but the true nature of their grouping behavior is still not understood. My objective was to determine if captive female hippos form either ephemeral aggregations or social groups. Behavioral data, …

Assessing And Modeling Mangrove Forest Dynamics Along The Temperate-Subtropical Ecotone In Eastern Florida, Susan Leitholf

Electronic Theses and Dissertations

Mangrove ecosystems are among the world's most endangered biomes; nearly one-half of the overall coverage is threatened by human activity, invasive species, and global climate change. Mangroves play an important ecosystem role through detrital production and by providing: fisheries and wildlife nursery habitat, shoreline protection, a sink for nutrients, carbon, and sediment. In addition to human activity, the Florida mangroves (Avicennia germinans, Laguncularia racemosa, and Rhizophora mangle) are being threatened by the invasive Brazilian pepper (Schinus terebinthifolius). This study was performed along a 261 km stretch of the east coast of Florida from Sebastian Inlet to the northern extent of …

Zoological Label As Literary Form, Victor Fet

Biological Sciences Faculty Research

Nabokov’s work is seen through the unique concept of zoological labels and their language. A label, written by a young naturalist, is a concentrated source of information, detail, and “naming the unnamed”; it reflects three Aristotelian unities (place, time, action).

Analysis Of Wnt Signaling During Caenorhabditis Elegans Postembryonic Development, Samantha Van Hoffelen, Michael A. Herman

School of Biological Sciences: Faculty Publications

Wnts play a central role in the development of many cells and tissue types in all species studied to date. Like many other extracellular signaling pathways, secreted Wnt proteins are involved in many different processes; in C. elegans these include cell proliferation, differentiation, cell migration, control of cell polarity, axon outgrowth, and control of the stem cell niche. Perturbations in Wnt signaling are also key factors in cancer formation, and therefore of interest to oncobiologists. Wnts are secreted glycoproteins, which bind to Frizzled transmembrane receptors and signal either through, or independently of β-catenin. Both β-catenin-dependent (Wnt/β-catenin) and -independent pathways function …

"A Global Assessment Of Freshwater Crab Diversity" , Darren Cj Yeo, Peter Kl Ng, Neil Cumberlidge, Celio Magalhães, Savel R. Daniels, Martha R. Campos

Journal Articles

No abstract provided.

"A Revision Of The Higher Taxonomy Of The Afrotropical Freshwater Crabs With A Discussion Of Their Biogeography" , Neil Cumberlidge, Richard M. Von Sternberg, Savel R. Daniels

Journal Articles

No abstract provided.

Are Rivers Just Bigstreams? Using A Pulse Method To Measure Nitrogen Demand In A Large River, J. L. Tank, E. J. Rosi-Marshall, Michelle A. Baker, R. O. Hall Jr.

Biology Faculty Publications

Given recent focus on large rivers as conduits for excess nutrients to coastal zones, their role in processing and retaining nutrients has been overlooked and understudied. Empirical measurements of nutrient uptake in large rivers are lacking, despite a substantial body of knowledge on nutrient transport and removal in smaller streams. Researchers interested in nutrient transport by rivers (discharge >10000 L/s) are left to extrapolate riverine nutrient demand using a modeling framework or a mass balance approach. To begin to fill this knowledge gap, we present data using a pulse method to measure inorganic nitrogen. (N) transport and removal in the …

Chihuahuan Desertkangaroo Rats: Nonlinear Effects Of Population Dynamics, Competition, And Rainfall, M. Lima, S.K. Morgan Ernest, J. H. Brown, A. Belgrano, N. C. Stenseth

Biology Faculty Publications

Using long-term data on two kangaroo rats in the Chihuahuan Desert of North America, we fitted logistic models including the exogenous effects of seasonal rainfall patterns. Our aim was to test the effects of intraspecific interactions and seasonal rainfall in explaining and predicting the numerical fluctuations of these two kangaroo rats. We found that logistic models fit both data sets quite well; Dipodomys merriami showed lower maximum per capita growth rates than Dipodomys ordii, and in both cases logistic models were nonlinear. Summer rainfall appears to be the most important exogenous effect for both rodent populations; models including this variable …

On Estimating The Exponent Of Power-Law Frequency Distributions, Ethan P. White, B. J. Enquist, J. L. Green

Biology Faculty Publications

Power-law frequency distributions characterize a wide array of natural phenomena. In ecology, biology, and many physical and social sciences, the exponents of these power-laws are estimated to draw inference about the processes underlying the phenomenon, to test theoretical models, and to scale up from local observations to global patterns. Therefore, it is essential that these exponents be estimated accurately. Unfortunately, the binning-based methods traditionally utilized in ecology and other disciplines perform quite poorly. Here we discuss more sophisticated methods for fitting these exponents based on cumulative distribution functions and maximum likelihood estimation. We illustrate their superior performance at estimating known …

On The Relationship Between Mass And Diameter Distributions In Tree Communities, J. C. Stegen, Ethan P. White

Biology Faculty Publications

It has been suggested that frequency distributions of individual tree masses in natural stands are characterized by power-law distributions with exponents near -3/4, and that therefore tree communities exhibit energetic equivalence among size classes. Because the mass of trees is not measured directly, but estimated from diameter, this supposition is based on the fact that the observed distribution of tree diameters is approximately characterized by a power-law with an exponent -2. Here we show that diameter distributions of this form are not equivalent to mass distributions with exponents of -3/4, but actually to mass distributions with exponents of -11/8. We …

Zero-Sum, The Niche,And Metacommunities: Long-Term Dynamics Of Community Assembly, S.K. Morgan Ernest, J. H. Brown, K. M. Thibault, Ethan P. White, J. R. Goheen

Biology Faculty Publications

Recent models of community assembly, structure, and dynamics have incorporated, to varying degrees, three mechanistic processes: resource limitation and interspecific competition, niche requirements of species, and exchanges between a local community and a regional species pool. Synthesizing 30 years of data from an intensively studied desert rodent community, we show that all of these processes, separately and in combination, have influenced the structural organization of this community and affected its dynamical response to both natural environmental changes and experimental perturbations. In addition, our analyses suggest that zero-sum constraints, niche differences, and metacommunity processes are inextricably linked in the ways that …

The Effect Of Road Crossing On Fish Movements In Small Etowah Basin Streams, Paul D. Benton, William E. Ensign, Byron J. Freeman

Faculty Articles

Increased road construction associated with urbanization may result in fragmentation and loss offish populations in streams. In this study, we documented frequency of movement of fishes through three separate types of road-crossings (clear-span bridges, box culverts, and tube culverts) in six small streams using mark-recapture sampling. Upstream movement between areas separated by either box or tube culverts was lower than upstream movement between similar areas not separated by a road crossing. Downstream movement between areas separated by box culverts was also lower than downstream movement between areas without obstructions. Upstream and downstream movement between areas separated by clear-span bridges was …

Functional Gene Losses Occur With Minimal Size Reduction In The Plastid Genome Of The Parasitic Liverwort Aneura Mirabilis, N. J. Wickett, Y. Zhang, S. K. Hansen, J. M. Roper, J. V. Kuehl, S. A. Plock, B. Goffinet, Paul G. Wolf, C. W. Depamphilis, Jeffrey L. Boore

Biology Faculty Publications

Aneura mirabilis is a parasitic liverwort that exploits an existing mycorrhizal association between a basidiomycete and a host tree. This unusual liverwort is the only known parasitic seedless land plant with a completely nonphotosynthetic life history. The complete plastid genome of A. mirabilis was sequenced to examine the effect of its nonphotosynthetic life history on plastid genome content. Using a partial genomic fosmid library approach, the genome was sequenced and shown to be 108,007 bp with a structure typical of green plant plastids. Comparisons were made with the plastid genome of Marchantia polymorpha, the only other liverwort plastid sequence available. …

Conservation Of Selection On Matk In Ferns Following An Ancient Loss Its Flanking Intron, A. M. Duffy, S. A. Kelchner, Paul G. Wolf

Biology Faculty Publications

The chloroplast gene trnK and its associated group II intron appear to be absent in a large and ancient clade that includes nearly 90% of fern species. However, the maturase protein encoded within the intron (matK) is still present and located on the boundary of a large-scale inversion. We surveyed the chloroplast genome sequence of clade-member Adiantum capillus-veneris for evidence of a still present but fragmented trnK intron. Lack of signature structural domains and sequence motifs in the genome indicate loss of the trnK intron through degradation in an ancestor of the clade. In plants, matK preferentially catalyzes splicing of …

Wind, Waves, And Wing Loading: Their Relative Importance To The At-Sea Distribution And Movements Of North And Central Pacific Albatrosses, R M. Suryan, D J. Anderson, Scott A. Shaffer, D D. Roby, Y Tremblay, D P. Costa, F Sato, K Ozaki, G Balogh

Faculty Publications, Biological Sciences

Among the varied adaptations for avian flight, the morphological traits allowing large-bodied albatrosses to capitalize on wind and wave energy for efficient long-distance flight are unparalleled. Consequently, the biogeographic distribution of most albatrosses is limited to the windiest oceanic regions on earth; however, exceptions exist. Species breeding in the North and Central Pacific Ocean (Phoebastria spp.) inhabit regions of lower wind speed and wave height than southern hemisphere genera, and have large intrageneric variation in body size and aerodynamic performance. Here, we test the hypothesis that regional wind and wave regimes explain observed differences in Phoebastria albatross morphology and we …

Perspectives In Ornithology: Application Of Tracking And Data-Logging Technology In Research And Conservation Of Seabirds, A E. Burger, Scott A. Shaffer

Faculty Publications, Biological Sciences

No abstract provided.

Diet Of Western Slimy Salamander, Plethodon Albagula (Caudata: Plethodontidae), From Two Mountain Ranges In Arkansas, Joseph Milanovich, Stanley E. Trauth, Tanja Mckay

Biology: Faculty Publications and Other Works

We identified stomach contents of 80 Plethodon albagula (Western Slimy Salamander) from two mountain ranges in Arkansas (Ozark and Ouachita) to examine if regional differences in diet occur. Museum specimens from 1985 to 2005 were used from locations throughout each mountain range. Although a wide variety of prey were found in stomachs, Hymenoptera: Formicidae and Coleoptera: Carabidae were found to be the most important food items in the diet of P. albagula. Ants and beetles constituted 85% abundance of their total diet (79.6% Ozark and 90.1% Ouachita) and 52.2% of their total biomass (42.6% Ozark and 64.1% Ouachita). Seventy-eight and …

Selective Gene Expression By Postnatal Electroporation During Olfactory Interneuron Nurogenesis, Alexander T. Chesler, Claire E. Le Pichon, Jessica H. Brann, Ricardo C. Araneda

Biology: Faculty Publications and Other Works

Neurogenesis persists in the olfactory system throughout life. The mechanisms of how new neurons are generated, how they integrate into circuits, and their role in coding remain mysteries. Here we report a technique that will greatly facilitate research into these questions. We found that electroporation can be used to robustly and selectively label progenitors in the Subventicular Zone. The approach was performed postnatally, without surgery, and with near 100% success rates. Labeling was found in all classes of interneurons in the olfactory bulb, persisted to adulthood and had no adverse effects. The broad utility of electroporation was demonstrated by encoding …

Estimation Of Submarine Groundwater Discharge From Bulk Ground Electrical Conductivity Measurements, Thomas Stieglitz, John Rapaglia, Henry Bokuniewicz

Biology Faculty Publications

The utility of bulk ground conductivity (BGC) measurements in the estimation of submarine groundwater discharge (SGD) was investigated at four sites covering a range of hydrogeological settings, namely Cockburn Sound (Australia); Shelter Island (USA); Ubatuba Bay (Brazil) and Flic-en-Flac Bay (Mauritius). At each of the sites, BGC was surveyed in the intertidal zone, and seepage meters were used for direct measurements of SGD flow rates. In the presence of detectable salinity gradients in the sediment, a negative correlation between SGD and BGC was recorded. The correlation is site-specific and is dependent on both the type of sediment and the mixing …

Comparative Diet Of Three Sympatric Sceloporus In The Semiarid Zapotitlan Valley, Mexico, V. Hugo Serrano-Cardozo, J. A. Lemos-Espinal, Geoffrey R. Smith

Faculty Publications

No abstract provided.

Role Of The Small Terminase Subunit Encoded By Staphylococcus Aureus Pathogenicity Island Sapi1 In Formation Of Sapi1 Transducing Particles, Nicholas Paul Olivarez

Theses and Dissertations

Staphylococcus aureus pathogenicity island SaPI1 is a genomic element that is mobilized and transduced at high frequency by helper phage 80α. SaPI1 encodes a small terminase protein that belongs to the phage small terminase subunit family. The presence of SaPI1-encoded small terminase suggests that it plays a role in SaPI1-specific packaging into transducing particles by complexing with the 80α large terminase subunit and redirecting recognition to a pac site on SaPI1 DNA from 80α DNA. The effects of deleting the small terminase genes in SaPI1 and in a prophage copy of 80α are consistent with this hypothesis. Induction of the …

Mechanical Abrasion And Electroporation In The Transformation Of Intact Pleurotus Ostreatus Hyphæ And Nutrient-Dependant Resistance To Hygromycin B, Alexander Cordesman

Theses and Dissertations

ABSTRACT 1: Abrasive treatment and subsequent electroporation of the basidiomycete Pleurotus ostreatus in a hypertonic buffer was investigated as a potential method of transforming of intact hyphæ. Mycelia, which are not capable of being transformed via electroporation due to interference by the cell wall, were abraded in an attempt to mechanically degrade the cell wall prior to electroporation. An electroporation field strength of 12,500 V/cm for 500 μs to 1.25 ms was found to be optimal based upon mortality effects. A 32 μm carborundum abrasive was initially evaluated but was quickly found to be inappropriately large so a corundum abrasive …

Camk-Ii Promotes Beta-Catenin-Dependent Transcription By Binding Flightless-I, Jamie Mcleod

Theses and Dissertations

Transient intracellular elevations of Ca2+ are common signaling mechanisms used to allosterically regulate proteins. One potential target of Ca2+ is Ca2+/calmodulin dependent protein kinase type II (CaMK-II). CaMK-II is a multi-functional protein kinase known to influence cellular pathways such as cell motility and cell cycle progression. Within the cell cycle, CaMK-II promotes the expression of the regulator protein cyclin D1, which is necessary for cell cycle progression. To further understand CaMK-II’s role in cyclin D1 expression, the binding partners of cytosolic CaMK-II were studied using mass spectrometry. Several proteins were identified including β actin, β tubulins, tropomodulin- 3 and Flightless-I. …