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Homeotic Mutants And The Assimilation Of Developmental Genetics Into The Evolutionary Synthesis, Michael Dietrich, Gregory K. Davis, David K. Jacobs

Dartmouth Scholarship

No abstract provided.

Numerical Modeling Of Hemodynamics In The Thoracic Aorta And Alterations By Dacron Patch Treatment Of Aortic Coarctation, Ronak Jashwant Dholakia

Master's Theses (2009 -)

Coarctation of the aorta (CoA) is a major congenital heart disease, characterized by a severe stenosis of the proximal descending thoracic aorta. Traditionally, surgery has been the treatment of choice for CoA. Dacron patch aortoplasty gained increased popularity after its introduction in the mid-twentieth century due to its advantages over other surgical treatment methods available at the time. A major complication with Dacron patch aortoplasty has been the formation of late aneurysm with as much as 51% incidence reported in follow up studies. The change in aortic morphology and formation of aneurysms after Dacron patch surgery could lead to local …

Microarray And Cdna Sequence Analysis Of Transcription During Nerve-Dependent Limb Regeneration, J. R. Monaghan, L. G. Epp, S. Putta, Robert B. Page, J. A. Walker, C. K. Beachy, W. Zhu, G. M. Pao, I. M. Verma, T. Hunter, S. V. Bryant, D. M. Gardiner, T. T. Harkins, S. R. Voss

Biology Faculty Publications (Archived)

Background: Microarray analysis and 454 cDNA sequencing were used to investigate a centuries-old problem in regenerative biology: The basis of nerve-dependent limb regeneration in salamanders. Innervated (NR) and denervated (DL) forelimbs of Mexican axolotls were amputated and transcripts were sampled after 0, 5, and 14 days of regeneration. Results: Considerable similarity was observed between NR and DL transcriptional programs at 5 and 14 days post amputation (dpa). Genes with extracellular functions that are critical to wound healing were upregulated while muscle-specific genes were downregulated. Thus, many processes that are regulated during early limb regeneration do not depend upon nerve-derived factors. …

Identification Of Camk-Ii Protein Targets In Tissue Culture And Zebrafish Embryos Using Tandem Mass Spectrometry, Alexandra Myers

Theses and Dissertations

Calcium (Ca2+)/calmodulin-dependent kinase 2 (CaMK-II) is one member of a family of Ca2+/calmodulin-dependent protein kinases that responds to intracellular Ca2+ signals (Hudmon, A. and H. Schulman (2002)). CaMK-II is a multifunctional regulator of transcription, cell cycle progression, cell motility and neuronal development. (Wang, C., et al. (2008), Easley, C. A. IV, et al. (2008), Osterhoff, M., et al. (2003), Faison, M. O., et al. (2002)). Recently, CaMK-II has been shown to be important in the early development of vertebrates. In developing zebrafish, disruption of CaMK-II expression has been shown to induce phenotypes similar to those documented in several human diseases. …

Pollution Swapping: The Effect Of Phosphorus Sequestration On Denitrification In Wetland Sediments, Nathaniel Femi Adegboyega

Dissertations and Theses @ UNI

Surface water quality is currently one of the most important environmental issues facing the state of Iowa since the ecological and recreational health of water bodies are threatened by non-point pollution. Most of Iowa's lakes are polluted because of their high concentration of nutrients, often phosphorus (P), which leads to excessive algal growth (eutrophication). To prevent eutrophication, it is necessary to prevent P from entering surface waters or to sequester (make unavailable to algae) the P that is already in the water body. One method to achieve this is to introduce substances that can tightly fix P (sorption).

Previous studies …

Resistance To And Virulence Of Fusarium Verticillioides, Tracy Lynn Bruns

Dissertations and Theses @ UNI

The filamentous fungus Fusarium verticillioides is plant pathogen that is responsible for billions of dollars in crop loss world wide. Fusarium verticillioides is of concern as it causes serious infections in maize and other agronomically important crop plants worldwide. Toxins produced by this fungus make grains from infected crops unusable. Plant resistance (or lack thereof) to disease is and has been for centuries a problem in agricultural productivity. Recent advances in the understanding of plant disease resistance promises to allow us to discover ways to counter the invasive properties of Fusarium verticillioides. Currently, very little is known about the virulence …

The Effects Of Varying Seeding Rates Of Bouteloua Curtipendula And Mowing On Native Plant Establishment In A New Prairie Reconstruction, Ryan Leon Welch

Dissertations and Theses @ UNI

A major problem early in prairie reconstruction is weed competition. Research has shown that mowing in the first year can increase establishment and survival of prairie plants. The use of nurse crops (companion crops) has been suggested as an alternative to mowing for weed suppression. The goal of this study was to examine various seeding rates of B. curtipendula, as a nurse crop in mowed and unmowed plots to determine if it suppressed weeds and aided in the establishment of natives. We hypothesized that increasing the seeding rate of B curtipendula will reduce weed growth and promote an increase in …

In Vitro Evaluation Of Bioactive Glass Scaffolds And Modified Bioactive Glasses With An Osteogenic Cell Line, Vernon C. Modglin

Masters Theses

"This investigation consisted of two parts focused on bioactive glasses and scaffolds for in vitro growth of bone cells for tissue engineering and bone repair. The first part involved evaluation of the ability of two new types of porous 13-93 bioactive glass scaffolds to support the growth and differentiation of mouse MLO-AS cells, an established osteogenic cell line used as a model of developing bone tissue. The two scaffold types tested included 13-93 glass fiber and trabecular-like scaffolds seeded with MLO-AS cells and cultured for intervals of 2 to 12 days. Collectively, in vitro results indicate that the 13-93 glass …

Nona-Arginine Peptides Facilitate Cellular Entry Of Semiconductor Nanocrystals: Mechanisms Of Uptake, Yi Xu

Masters Theses

"Luminescent semiconductor quantum dots (QDs) have recently been used for delivering and monitoring biomolecules, such as drugs and proteins. However, QDs alone have a very low efficiency of transport across the plasma membrane. In order to increase the efficiency of QD delivery, synthetic nona-arginine (sR9) was used, a cell penetrating peptide, to facilitate uptake. Data demonstrated that sR9 could significantly increase the cellular uptake of QDs by noncovalent binding between QDs and sR9. Furthermore, the mechanisms of QD/sR9 cellular internalization were investigated. Low temperature and metabolic inhibitors markedly inhibited the uptake of QD/sR9, indicating that internalization is an energy-dependent process. …

Spatial And Temporal Variability Of Macroinvertyebrate Communities In Vernal Pools On The Coastal Plain Of Virginia, Shrijeeta Ganguly

Theses and Dissertations

Vernal pools are often defined as seasonal pools that typically are inundated beginning in the winter and then drying out completely in summer. Though evidence of spatial and temporal variability in the macroinvertebrate communities of vernal pools has been found in previous studies, it has not been studied extensively. The primary objective of this study was to determine the extent of variability in the macroinvertebrate communities within vernal pools closely situated in a forested landscape. An effort was made to explain this variability with respect to certain physiochemical environmental variables of the pools. Significant variability was observed in the macroinvertebrate …

The Effect Of Caffeine On The Bacterial Populations In A Freshwater Aquarium System, Adrienne M. Gibson, Roderick M. Morgan, Alexey G. Nikitin

Student Summer Scholars Manuscripts

Caffeine is becoming a common chemical found in the environment but, little research has been done to understand the environmental effects of caffeine, including dissolved caffeine in aquatic systems. The goal of this research study was to begin to understand how caffeine may interact with aquatic environment, using the bacteria of the genus Pseudomonas, commonly found in the aquatic habitat. We found that Pseudomonas shows an increase in growth when exposed to caffeine, which results in a change in spectrophotometric absorbance, increase in bacterial colony count in the presence of caffeine, and in bio-film like sheen appearing on the glass …

An Examination Of Speciation, Extinction, And Evolutionary Relationships In Plants From Two Continents, Corey Davis, Timothy Evans

Student Summer Scholars Manuscripts

No abstract provided.

Sex Differences In Innate Immunity In Tree Swallows, Bradley J. Houdek, Michael P. Lombardo, Patrick A. Thorpe

Student Summer Scholars Manuscripts

Evolutionary theory predicts that exposure to more diverse pathogens will lead to the evolution of more effective immune responses. The innate immune system defends the host from pathogens in a non-specific manner and is an important first-line of defense. We predicted that female Tree Swallows have more robust innate immunocompetence than males because females are exposed to more microbes during the breeding season than are males. This is because (a) females participate in extra-pair copulations with multiple males exposing them to sexually transmitted microbes (STMs) (e.g., bacteria, fungi, viruses), (b) the transmission of STMs during copulation is asymmetrical because ejaculates …

Unique Contractile And Structural Protein Expression In Dog Ileal Inner Circular Smooth Muscle, Thomas J. Eddinger

Biological Sciences Faculty Research and Publications

This study was designed to test the hypothesis that there is heterogeneous expression of contractile and structural proteins between the smooth muscle cells (SMCs) in the inner and outer circular muscle (ICM and OCM) layers of the ileum. Immunohistochemical staining and quantitation of fresh frozen sections of the dog ileum was performed using protein specific antibodies. Smooth muscle (SM) SMA myosin heavy chain (MHC), α- and γ-SM actin, and vinculin all show greater expression in the ICM relative to the OCM. SMB MHC and fibronectin show the opposite pattern, with greater expression in the OCM relative to the ICM. Differences …

Spectral Reflectance And Digital Image Relations Among Five Aquatic Weeds, James H. Everitt, Kenneth R. Summy, Chenghai Yang

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

This study reports on the use of an artificial quartz halogen lighting source to facilitate the acquisition of spectral light reflectance measurements and digital imaging of invasive aquatic weeds. Spectral leaf or leaf/stem reflectance measurements were made on five aquatic weeds: Eurasian watermilfoil (Myriophyllum spicatum L.), hydrilla [Hydrilla verticillata (L. F.) Royle], parrotfeather [Myriophyllum aquaticum (Vall.), waterhyacinth [Eichhornia crassipes (Mart.) Solms], and waterlettuce (Pistia stratiotes L.). Reflectance measurements were studied at five wavelengths of the electromagnetic spectrum: 450 nm (visible blue), 550 nm (visible green), 650 nm (visible red), 680 nm (visible red edge), and 850 nm (near-infrared). Reflectance values …

Comparison Of Leaf-Clipping And Leaf-Piercing Techniques As Applied To The Seagrass Syringodium Filiforme, Joseph L. Kowalski, Hudson R. Deyoe, Christian P. Krull, Terry C. Allison

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Leaf elongation rates of the seagrass Syringodium filiforme (Kütz., 1860) were assessed at two sites in a subtropical lagoon of Texas on eleven occasions from January 1996 to April 1997 using two methods, clipping and leaf piercing (marking) to estimate leaf growth. Pierced shoots grew at a significantly faster rate than clipped shoots irrespective of site. Clipping underestimated leaf elongation by 30%–38%, although differences at individual sites were as high as 69%–72%. Underestimation of leaf growth rate derived by clipping could be corrected using a site-specific linear regression relationship between leaf growth rates determined by clipping and piercing methods. The …

Tournefortia Hirsutissima (Boraginaceae) New To The Flora Of Texas, Alfred Richardson, Ken King

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Toumefortia hirsutissima (Boraginaceae) is reported for extreme south Texas, a new record for the state of Texas.

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Toumefortia hirsutlssima (Boraginaceae) se cita de! extremo sur de Tejas, es el primer registro para el estado de Tejas.

Great Curassow And Crested Guan Near Ciudad Victoria, Tamaulipas, Mexico, Timothy Brush

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Great Curassow (Crax rubra) and Crested Guan (Penelope purpurascens) were rediscovered in the Ciudad Victoria area of southwestern Tamaulipas, Mexico for the first time since 1909. Birds were found in low elevation canyons containing permanent running water, with riparian forest dominated by Montezuma bald-cypress (Taxodium mucronatum) and steep scrub-covered slopes. These records represent the northernmost known points of the ranges of both species. Additional field work will be needed to determine whether these small populations are isolated from the nearest known populations in the El Cielo/Gómez Farías area of southern Tamaulipas.

Transcriptional And Morphological Changes During Thyroxine-Induced Metamorphosis Of The Mexican Axolotl And Axolotl-Tiger Salamander Hybrids, Robert Bryce Page

University of Kentucky Doctoral Dissertations

For nearly a century, amphibian metamorphosis has served as an important model of how thyroid hormones regulate vertebrate development. Consequently metamorphosis has been studied in a number of ways including: morphologically, developmentally, ecologically, and from an endocrine perspective. Over the last two decades, much has been learned about the molecular basis of anuran (frog) metamorphosis. However, very little is known about the molecular underpinnings of urodele (salamander) metamorphosis. Using the axolotl and axolotl hybrids as models, I present some of the first studies on the gene expression changes that occur during urodele metamorphosis. In Chapter 1, the motivation for the …

Substrate And Regulation Of Mitochondrial Μ-Calpain, Aashish Joshi

University of Kentucky Doctoral Dissertations

μ -Calpain is localized to the mitochondrial intermembrane space. Apoptosisinducing factor (AIF), which executes caspase-independent cell death, is also localized to the mitochondrial intermembrane space. Following processing at the N-terminus, AIF becomes truncated (tAIF) and is released from mitochondria. The protease responsible for AIF processing has not been established. The same submitochondrial localization of mitochondrial μ-calpain and AIF gives support to the hypothesis that mitochondrial μ-calpain may be responsible for processing AIF. Atractyloside-induced tAIF release in rat liver mitochondria was inhibited by cysteine protease inhibitor MDL28170, but not by calpain inhibitors PD150606 or calpastatin. Moreover, μ-calpain immunoreactivity was difficult to …

Physiological Genomics Of Spinal Cord And Limb Regeneration In A Salamander, The Mexican Axolotl, James Robert Monaghan

University of Kentucky Doctoral Dissertations

Salamanders have a remarkable ability to regenerate complex body parts including the limb, tail, and central nervous system. Although salamander regeneration has been studied for several hundred years, molecular-level studies have been limited to a relatively few important transcription factors and signaling molecules that are highly conserved among animals. Physiological genomic approaches were used here to investigate spinal cord and limb regeneration. Chapter 2 reports that hundreds of gene expression changes were identified during spinal cord regeneration, showing that a diverse injury response is activated in concert with extracellular matrix remodeling mechanisms during the early acute phase of natural spinal …

A Comparative Study Of Larval Gene Expression Between A Paedomorphic And Metamorphic Species Of Ambystomatid Salamander, Meredith A. Boley

University of Kentucky Master's Theses

Ambystoma tigrinum undergoes an obligatory metamorphosis while A. mexicanum fails to metamorphose and exhibits paedomorphosis. While it is clear that salamander paedomorphosis is associated with genetic changes that delay developmental timing, it is not clear when and how these changes manifest during development. It is possible that paedomorphic and metamorphic larvae show equivalent patterns of developmental until late in the larval period, when brain regions become competent to stimulate the release of metamorphic hormones. To test this hypothesis, I compared gene expression patterns between the brains of A. mexicanum and A. t. tigrinum larvae. In support of the developmental equivalence …

Furthering Pharmacological And Physiological Assessment Of The Glutamatergic Receptors At The Drosophila Neuromuscular Junction, Junyoung Lee

University of Kentucky Master's Theses

Drosophila larval neuromuscular junctions (NMJs) serve as a model for synaptic physiology. The molecular sequence of the postsynaptic glutamate receptors has been described; however, the pharmacological profile has not been fully elucidated. Despite the postsynaptic molecular sequence used to classify the receptors as a kainate subtype, they do not respond pharmacologically as such. Kainate does not depolarize the muscle, but dampens evoked EPSP amplitudes. Quantal responses show a decreased amplitude and area under the voltage curve indicative of reduced postsynaptic receptor sensitivity to glutamate transmission. ATPA, a kainate receptor agonist, did not mimic kainate’s action. The metabotropic glutamate receptor agonist …

Coiled-Coil-Mediated Dimerization Is Not Required For Myosin Vi To Stabilize Actin During Spermatid Individualization In Drosophila Melanogaster, Tatsuhiko Nogushi, Deborah J. Frank, Mamiko Isaji, Kathryn G. Miller

Biology Faculty Research

Myosin VI is a pointed-end-directed actin motor that is thought to function as both a transporter of cargoes and an anchor, capable of binding cellular components to actin for long periods. Dimerization via a predicted coiled coil was hypothesized to regulate activity and motor properties. However, the importance of the coiled-coil sequence has not been tested in vivo. We used myosin VI's well-defined role in actin stabilization during Drosophila spermatid individualization to test the importance in vivo of the predicted coiled coil. If myosin VI functions as a dimer, a forced dimer should fully rescue myosin VI loss of function …

Evolutionary Time For Dispersal Limits The Extent But Not The Occupancy Of Species’ Potential Ranges In The Tropical Plant Genus Psychotria (Rubiaceae), John R. Paul, Cynthia Morton, Charlotte M. Taylor, Stephen J. Tonsor

Biology Faculty Publications

Explaining the diversity in geographic range sizes among species is a central goal of ecological and evolutionary studies. We tested species age as an explanation of range size variation within a group of understory shrubs in the Neotropics (Psychotria subgenus Psychotria, Rubiaceae). We distinguish between range occupancy (filling an occupied area) and range extent (maximum distances dispersed). We used Bayesian relaxed-clock dating of molecular sequence data to estimate the relative age of species, and we used species distribution modeling to predict species' potential ranges. If the range sizes of species are limited by time for dispersal, we hypothesize that older …

Virus-Encoded Homologs Of Cellular Interleukin-10 And Their Control Of Host Immune Function, Barry Slobedman, Peter A. Barry, Juliet V. Spencer, Selmir Avdic, Allison Abendroth

Biology Faculty Publications

No abstract provided.

Applying Marine Protected Area Design Models In Large Estuarine Systems, Roman Zajac, Amanda E. Neely

Biology and Environmental Science Faculty Publications

Several types of design models are currently being used to develop marine protected areas (MPAs) for conservation of coastal and pelagic ecosystems. However, few studies have applied these models in large estuaries which have unique characteristics that need to be considered in MPA design, including strong physical, chemical and biological gradients and significant human impacts. We explored how one design model, MARXAN, can be applied to estuarine systems by developing MPA design scenarios for Long Island Sound, an estuary in the northeastern USA. Using sedimentary texture as a proxy for habitats, we modeled and tested several scenarios where conservation goals …

Ngasp - The Nematode Genome Annotation Assessment Project, Avril Coghlan, Tristan J. Fiedler, Sheldon J. Mckay, Paul R. Flicek, Todd W. Harris, Darin Blasiar, Lincoln D. Stein

Biomedical Engineering and Sciences Faculty Publications

While the C. elegans genome is extensively annotated, relatively little information is available for other Caenorhabditis species. The nematode genome annotation assessment project (nGASP) was launched to objectively assess the accuracy of protein-coding gene prediction software in C. elegans, and to apply this knowledge to the annotation of the genomes of four additional Caenorhabditis species and other nematodes. Seventeen groups worldwide participated in nGASP, and submitted 47 prediction sets across 10 Mb of the C. elegans genome. Predictions were compared to reference gene sets consisting of confirmed or manually curated gene models from WormBase. Results: The most accurate gene-finders were …

Ecology Of The Evening Bat (Nycticeius Humeralis) At The Northern Edge Of The Range, Olivia Maya Munzer

Master's Theses and Doctoral Dissertations

Only a single colony of evening bats (Nycticeius humeralis) is known to occur in Michigan, and it is the northernmost colony on the North American continent. In mid-May, only female evening bats migrate to Michigan to raise their pups, and in late August, evening bats migrate to southern portions of their range, where they are ubiquitous. I studied the roosting and dietary ecology of the evening bat in southeastern Michigan. Evening bats roosted in cavities, crevices, and under exfoliating bark of older trees located in a bottomland forest, interlaced with waterways and surrounded by agricultural fields. These habitats …

Changes In Biotic And Abiotic Processes Following Mangrove Clearing, Elise Granek, Benjamin I. Ruttenberg

Biological Sciences

Mangrove forests, important tropical coastal habitats, are in decline worldwide primarily due to removal by humans. Changes to mangrove systems can alter ecosystem properties through direct effects on abiotic factors such as temperature, light and nutrient supply or through changes in biotic factors such as primary productivity or species composition. Despite the importance of mangroves as transitional habitats between land and sea, little research has examined changes that occur when they are cleared. We examined changes in a number of biotic and abiotic factors following the anthropogenic removal of red mangroves (Rhizophora mangle) in the Panamanian Caribbean, including …