Digital Commons Network^™

Spectral Sensitivity Of Circadian Entrainment In Araneoid And Non-Araneoid Spiders, Craig Campbell

Electronic Theses and Dissertations

Artificial lighting at night is a growing worldwide phenomenon that can negatively impact flora and fauna in the surrounding area. With new technology, there is now opportunity for change: newer LEDs can emit specific wavelengths of light that may be less ecologically damaging. In this study, we aim to describe the circadian spectral sensitivity of two phylogenetically distant urban spider species with similar life histories, the Araneoid Parasteatoda tepidariorum and non-Araneoid Pholcus manueli, to determine differences between them. We exposed these spiders to progressively dimmer levels of white, blue, green, or red light. Despite evidence that spiders lack visual …

The Functional Role Of The Dynorphin-Kappa Opioid Receptor System In Cocaine-Dependent Male Rats, Jessica Lord

Electronic Theses and Dissertations

Activation of the dynorphin-kappa opioid receptor (KOR) system produces a negative emotional state during drug withdrawal, thereby motivating continued cocaine-seeking behaviors. However, it is not clear whether dynorphin plays a functional role in the onset of compulsive cocaine-taking. Here, escalation of cocaine self-administration was significantly attenuated by pretreatment of a long-acting KOR antagonist, norbinaltorphimine (NBI), in long access (LgA; 6-hours) male rats, whereas there was no effect of NBI on short access (ShA; 1-hour) rats on a fixed or progressive ratio schedule of reinforcement. Additionally, optical density of prodynorphin was increased in the nucleus accumbens (NAc) core and shell, bed …

Bat Humoral Immunity And Its Role In Viral Pathogenesis, Transmission, And Zoonosis, Anne A. Roffler, Daniel P. Maurer, Tamika J. Lunn, Tarja Sironen, Kristian M. Forbes, Aaron G. Schmidt

Biological Sciences Faculty Publications and Presentations

Bats harbor viruses that can cause severe disease and death in humans including filoviruses (e.g., Ebola virus), henipaviruses (e.g., Hendra virus), and coronaviruses (e.g., SARS-CoV). Bats often tolerate these viruses without noticeable adverse immunological effects or succumbing to disease. Previous studies have largely focused on the role of the bat’s innate immune response to control viral pathogenesis, but little is known about bat adaptive immunity. A key component of adaptive immunity is the humoral response, comprised of antibodies that can specifically recognize viral antigens with high affinity. The antibody genes within the 1,400 known bat species are highly diverse, and …

Analysis Of Malarial Impact: Understanding Disease Transmission, Epidemiology, And Effects On Fetal Life, Josey Sumpter

Graduate Student Dissertations, Theses, Capstones, and Portfolios

Malaria is a significant public health problem which mainly affects malaria endemic regions, such as parts of Africa, South America, and Western Asia. However, all hot and humid environments are susceptible to spread leading to a global scale. Malaria affects an estimated 200 million people each year, with about 600,000 cases resulting in death. Malaria is passed through the bites of infected female anopheles mosquitos, with one of the six Plasmodium genus parasites that are malarial causing. Once the parasite enters the blood stream it infects erythrocytes which can then spread throughout the entire body. Disease is often characterized by …

Early Onset Alzheimer’S Disease Markers In Mouse Hippocampus Unveiled By Single-Cell Transcriptomic Analysis Following Cranial Radiotherapy, Tuba Aksoy

Dissertations and Theses (Open Access)

Cranial radiation therapy plays an integral role in the treatment of brain tumors but can lead to progressive cognitive deficits in survivors by mechanisms that are poorly understood. To develop preventive or mitigative strategies, it is crucial to better understand the underlying pathogenesis of radiation-induced cognitive impairments. The study investigated single-cell transcriptomics and DNA methylation changes as potential drivers of persistent cellular dysfunction after radiation exposure, specifically concentrating on the CA1-3 regions of the hippocampus and the prefrontal cortex due to their role in cognitive functions. Thirteen-week-old mice underwent whole-brain radiation at clinically relevant doses. Following whole-brain radiation, an assessment …

Exploring The Role Of The Arginine-Methylation Writer-Reader Pair Prmt5/Snd1 In Jak2-Mutant Myeloproliferative Neoplasms, Rocio Rubiano

Dissertations and Theses (Open Access)

Myeloproliferative neoplasms (MPNs) are a hematopoietic disease characterized by hyperproliferation of cells of the myeloid lineage for which current therapeutic options are limited. Discovered in 2005, the JAK2V617F mutation is the most common driver mutation in BCR-ABL negative MPNs, resulting in constitutive activation of the JAK2 protein and the JAK-STAT signaling pathway. A role for the methyltransferase activity of Protein Arginine Methyltransferase 5 (PRMT5) has been proposed in JAK2-mutant MPN, highlighting both a mechanism through which this mutation can drive disease progression and a potential mode of therapeutic intervention. Staphylococcal Nuclease Domain-Containing Protein 1 (SND1) is the effector molecule responsible …

The Role Of An Ultraconserved Long Non-Coding Rna In B-Cell Lymphomagenesis, Swati Mohapatra

Dissertations and Theses (Open Access)

Ultraconserved regions (UCRs) are genomic segments with perfect (100%) conservation between the orthologous regions of human, rat, and mouse genomes. UCRs can be transcribed into mono-exonic long non-coding RNAs (lncRNAs) known as transcribed ultraconserved regions (T-UCRs). These regions, despite lacking protein-coding potential, are increasingly recognized for their regulatory roles in gene expression, including the modulation of non-coding RNA (ncRNA) transcripts. NcRNAs play crucial roles in cellular processes, including oncogenic transformation, with emerging evidence revealing their ability to encode small peptides known as ncRNA-encoded peptides (ncPEPs). These peptides, originating from small open reading frames (smORFs), contribute to diverse cellular functions and …

Outcomes Of Different Steroid Dosing Regimens In Critical Covid-19 Pneumonia At A Kenyan Hospital: A Retrospective Cohort Study, John Odhiambo, Jasmit Shah, Nancy Kunyiha, Felix Riunga, Charles Makasa

Internal Medicine, East Africa

Background: Among therapeutic options for severe and critical COVID- 19 infection, dexamethasone six milligrams once daily for ten days has demonstrated mortality benefit and is guideline recommended at this dose. In practice, variable doses of steroids have been used, especially in critical care settings. Our study aimed to determine the pattern of steroid dosing and outcomes in terms of critical care mortality, occurrence of dysglycaemias, and occurrence of superadded infections in patients with critical COVID-19.

Methods: A retrospective cohort study was carried out on all eligible patients admitted to the Aga Khan University Hospital, Nairobi, with critical COVID-19 between 1st …

Effect Of Chemical Enhancers On Transdermal Delivery Of Amiloride For Management Of Resistant Hypertension, Oluwatosin Tabitha Leshaodo

Electronic Theses and Dissertations

Amiloride, a diuretic used for managing resistant hypertension, is hindered by low oral bioavailability and Gastrointestinal side effects, impacting patient compliance. This study investigates transdermal delivery as an alternative to reduce pill burden and improve adherence. Using dermatomed porcine ear skin, the research examined the passive transdermal delivery of amiloride and the effect of various chemical enhancers, including oleic acid, oleyl alcohol, tocopheryl polyethylene glycol succinate, and N-methyl-2-pyrrolidone, individually or in combination. A validated High-Performance Liquid Chromatography method, adhering to Internal Council for Harmonized guidelines (ICH), was employed for quantitative analysis. In vitro permeation studies, conducted using porcine skin and …

Pelvic Sucker Form And Function In Waterfall Climbing Gobies: Variation In Morphology And Adhesive Performance Can Inspire Biomimetic Innovation, Amanda Palecek Mcclung

All Dissertations

Adhesive systems have evolved in many animal lineages and have appeared multiple times among the fishes. Bioadhesion in the gobies, a group found around the world, plays a role in both station-holding and even climbing. Among the Hawaiian streams, we find four species of amphidromous gobies which must face predators as juveniles and climb streams up to hundreds of feet tall to reach adult habitats. These gobies exhibit a range of climbing and adhesive abilities that result in an elevation-dependent species stratification, in which increasingly proficient climbing species are found in streams at increasingly higher elevations. This group is therefore …

Influence Of Invasive Species, Drought, And Stream Permanence On Stream Crayfish Species With A Focus On The Imperiled Mammoth Spring Crayfish (Faxonius Marchandi), Leah Marie Bayer

Graduate Theses and Dissertations

Freshwater crayfish constitute one of the most-threatened taxonomic groups in North America. Invasion by other crayfish species as well as habitat degradation through alteration of natural flow regime are two of the most prominent threats to crayfish persistence. Additionally, extreme weather events like droughts can amplify threats posed by other stressors on crayfish populations and are expected to increase in frequency, magnitude, and/or duration in the future, which may negatively influence narrow-ranged endemic crayfish populations typical of the Southeast. The Mammoth Spring Crayfish, Faxonius marchandi, is a narrow-ranged endemic that occurs in the Spring River drainage of Arkansas and Missouri …

A Robust Genome Assembly With Transcriptomic Data From The Striped Bark Scorpion, Centruroides Vittatus, Tsunemi Yamashita, Douglas D. Rhoads, Jeff Pummill

Biological Sciences Faculty Publications and Presentations

Scorpions, a seemingly primitive, stinging arthropod taxa, are known to exhibit marked diversity in their venom components. These venoms are known for their human pathology, but they are also important as models for therapeutic and drug development applications. In this study, we report a high-quality genome assembly and annotation of the striped bark scorpion, Centruroides vittatus, created with several shotgun libraries. The final assembly is 760 Mb in size, with a BUSCO score of 97.8%, a 30.85% GC, and an N50 of 2.35 Mb. We estimated 36,189 proteins with 37.32% assigned to Gene Ontology (GO) terms in our GO …

Epigenetic Dynamics In Zebrafish Development And Regeneration, Yujie Chen

Arts & Sciences Graduate Student Theses and Dissertations

Understanding the mechanisms that underlie cell fate and status decisions remains a complex task in biological research. Despite sharing identical genetic content, cells can differentiate into diverse types or remain in different statuses based on epigenetic dynamics. Here, I have structured my thesis into two distinct but interconnected parts, each focusing on a specific aspect of epigenetic control during zebrafish development and regeneration. The first part of the thesis focuses on the differentiation of pigment cells from neural crest cells to understand how the same progenitor cell population can bifurcate into two different pigment cell lineages. Through a comprehensive analysis …

Effects Of Hypoxia On Monocyte Differentiation And Macrophage Specification During Ischemic Heart Injury, Farid Faridovich Kadyrov

Arts & Sciences Graduate Student Theses and Dissertations

Myocardial infarction (MI) occurs following cessation of blood flow to an area of the heart and leads to ischemia, cardiomyocyte death, and inflammation. Chronically, MI initiates a compensatory process referred to as left ventricular remodeling, which is characterized by cardiomyocyte hypertrophy, fibrosis, and a decline in heart function. Left ventricular remodeling is central to the pathogenesis of heart failure. During myocardial infarction, Ly6chigh CCR2+ monocytes enter the heart and differentiate into a variety of macrophage populations including inflammatory CCR2+ macrophages. Resident cardiac macrophages are also present within the heart at homeostasis. Previous research from several groups has shown that once …

Distribution Of Great Horned Owls (Bubo Virginianus) Near Breeding Grounds Of The Reintroduced Northern Aplomado Falcon (Falco Femoralis Septentrionalis) At Laguna Atascosa National Wildlife Refuge In Coastal South Texas, David Roman Bontrager

Boise State University Theses and Dissertations

Habitat change is the leading cause of species extinctions and declines worldwide. In addition to species losses, habitat changes can also alter species behavior, diet, and the way they interact with other species. Less than one percent of coastal grasslands and prairies in Texas, U.S.A. remain intact as a result of agriculture, urbanization, and woody plant encroachment. This loss of Texas grasslands has resulted in bottom-up impacts, including the extirpations of multiple species that inhabited these ecosystems, such as the Northern Aplomado Falcon (Falco femoralis septentrionalis), Attwater’s Prairie Chicken (Tympnuchus cupido attwateri), and Pronghorn (Antilocapra …

Associations Between Landscape Changes And Declines In Golden Eagle Territory Occupancy In The Morley Nelson Snake River Birds Of Prey National Conservation Area, Ashley Santiago

Boise State University Theses and Dissertations

Rapid loss of native shrubs and expansion of invasive annuals like cheatgrass (Bromus tectorum) have extensively altered shrub-steppe systems. Vegetation changes can have bottom-up effects on trophic interactions and ecosystem dynamics. Predators, like Golden Eagles (Aquila chrysaetos) that forage on shrub-reliant prey, may increase their territory size to cope with degraded habitat or abandon historically occupied territories. We used a multi-season occupancy model that accounted for imperfect detection to investigate the associations between landscape cover (i.e., shrub and annual herbaceous), fire history, neighbor density, and territory occupancy of 36 Golden Eagle nesting territories in the Morley …

Linking Physiology, Epidemiology, And Demography: Understanding How Lianas Outcompete Trees In A Changing World, Hannes De Deurwaerder, Matteo Detto, Marco Visser, Stefan A. Schnitzer, Stephen W. Pacala

Biological Sciences Faculty Research and Publications

Extending and safeguarding tropical forest ecosystems is critical for combating climate change and biodiversity loss. One of its constituents, lianas, is spreading and increasing in abundance on a global scale. This is particularly concerning as lianas negatively impact forests’ carbon fluxes, dynamics, and overall resilience, potentially exacerbating both crises. While possibly linked to climate-change-induced atmospheric CO₂ elevation and drought intensification, the reasons behind their increasing abundance remain elusive. Prior research shows distinct physiological differences between lianas and trees, but it is unclear whether these differences confer a demographic advantage to lianas with climate change. Guided by extensive datasets collected …

Diatom Abundance In The Polar Oceans Is Predicted By Genome Size, Wade R. Roberts, Adam M. Siepielski, Andrew J. Alverson

Biological Sciences Faculty Publications and Presentations

A principal goal in ecology is to identify the determinants of species abundances in nature. Body size has emerged as a fundamental and repeatable predictor of abundance, with smaller organisms occurring in greater numbers than larger ones. A biogeographic component, known as Bergmann’s rule, describes the preponderance, across taxonomic groups, of larger-bodied organisms in colder areas. Although undeniably important, the extent to which body size is the key trait underlying these patterns is unclear. We explored these questions in diatoms, unicellular algae of global importance for their roles in carbon fixation and energy flow through marine food webs. Using a …

Ecosystem Effects Of Targeted Grazing With Sheep To Manage Cheatgrass, Madelyn Sorrentino

Boise State University Theses and Dissertations

Cheatgrass (Bromus tectorum) invasion is widespread across the Great Basin region of the United States and is expected to continue. Cheatgrass degrades ecosystem functioning, increases the risk of wildfire, and negatively affects rangeland-based agriculture and other land uses. Targeted grazing—the use of livestock to accomplish a vegetation management objective—has been suggested as a management practice that could combat cheatgrass invasion at the landscape level. However, knowledge of targeted grazing at a management-relevant scale and its effects on other vital ecosystem components, such as non-target plant species and soil properties, remains limited. To test the efficacy of sheep targeted …

Deletion Of Mipep In Adipocytes Protects Against Obesity And Insulin Resistance By Boosting Muscle Metabolism, Alexis Diaz-Vegas, Kristen C Cooke, Harry B Cutler, Belinda Yau, Stewart W C Masson, Dylan Harney, Oliver K Fuller, Meg Potter, Søren Madsen, Niamh R Craw, Yiju Zhang, Cesar L Moreno, Melkam A Kebede, G Gregory Neely, Jacqueline Stöckli, James G Burchfield, David E James

Faculty, Staff and Students Publications

Mitochondria facilitate thousands of biochemical reactions, covering a broad spectrum of anabolic and catabolic processes. Here we demonstrate that the adipocyte mitochondrial proteome is markedly altered across multiple models of insulin resistance and reveal a consistent decrease in the level of the mitochondrial processing peptidase miPEP.

OBJECTIVE: To determine the role of miPEP in insulin resistance.

METHODS: To experimentally test this observation, we generated adipocyte-specific miPEP knockout mice to interrogate its role in the aetiology of insulin resistance.

RESULTS: We observed a strong phenotype characterised by enhanced insulin sensitivity and reduced adiposity, despite normal food intake and physical activity. Strikingly, …

Effects Of Land Cover And Land Change On Monarch Butterfly Presence Across The Conus, Chris R. Burkhart

Graduate Theses and Dissertations

The decline of monarch butterfly populations (Danaus plexippus L.) over the past four decades, particularly in their overwintering habitats, has raised concerns about the species' conservation. Habitat loss and modification, particularly within the contiguous United States, are attributed as one of the key drivers of this decline. However, the specific impact of land use and land cover (LULC) changes on monarch distributions remains inadequately documented. This study integrates monarch observations from multiple sources spanning 2008 to 2019 with LULC data to analyze the relationship between habitat configuration and monarch presence. Using a randomized grid sampling approach, habitat configuration metrics were …

Partial Immunity To Mycoplasma Gallisepticum After An Initial Infection Is Long-Lasting And Reduces Transmission In Flocks Of Canaries, Madeline Sudnick

Graduate Theses and Dissertations

Pathology during a second infection can be influenced by immunity and an increase in resistance or tolerance of individuals. Population-level differences in the ability to maintain immunity can lead to contrasting survival outcomes between groups and determine how future outbreaks will spread. However, long term wildlife disease surveillance can be challenging due to lack of infrastructure and host-pathogen specific tests. Calculating disease transmission likelihood requires understanding individual-level heterogeneity in pathology and behavior, and there is limited knowledge in understanding how populations in different stages of an epidemic will transmit disease. In Chapter I, we aim to help fill a gap …

Draft Genome Sequences Of An Enterobacter Hormaechei And Providencia Rettgeri Isolated From The Urine Of A Male Experiencing A Catheter-Associated Urinary Tract Infection, Helen Appleberry, Michaela Brady, Samantha Webster, Alan J. Wolfe, Catherine Putonti, Alex Kula

Biology: Faculty Publications and Other Works

Catheter-associated urinary tract infections (CAUTIs) can be caused by a variety of microbes. Here, we describe the draft genome assemblies of two species—Enterobacter hormaechei and Providencia rettgeri—purified from the catheterized urine sample of a male diagnosed with a CAUTI.

Cherokia Georgiana Mitogenome Sequencing And Analysis, William Wittstock

Biology Theses

Despite the vast diversity of millipedes, complete genomic and mitogenomic data available in public databases is limited, hindering comprehensive studies on their classification, evolution, and genetics. Among the underrepresented taxa are the Xystodesmidae, a family comprising approximately 500 species with minimal mitogenomic data, and no complete genomes sequenced. Our research involves sequencing the mitochondrial genome of Cherokia georgiana, a representative of this diverse family with interesting traits that are not clearly defined at a genetic level. This research also serves as a pilot study to develop DNA extraction methods and protocols for whole genome sequencing. Multiple DNA extraction kits …

Freedom As The Physical Notion. Mechanics Of A Material Point, Michael Vigdorowitsch

Karbala International Journal of Modern Science

This is a novel conceptual attempt to introduce freedom as a consistent physical notion. The present consideration is limited to mechanics of a material point. Adapted to physical representation, freedom is tested throughout the paper to conform to its general perception. It is first tried on such physical notions (but not restricted to) as potency of a set, Lagrangian, action, degrees of freedom. Defined as angular and essentially nonlinear variable, it appears to be dual as that the domain affords and that the material point possesses within the domain, not necessarily equal to one another. Freedom has to degrade if …

The Potential Influence Of Immune Modulatory Molecules (Tgf-Βiii And Ctla-4) In Pathogenicity Of Pcos, Mustafa Riyadh Abdullah, Hazima Mossa Alabassi

Karbala International Journal of Modern Science

Polycystic ovary syndrome (PCOS) is characterised by chronic anovulation, hyperandrogenism, polycystic ovaries, and immunological dysregulation. Immune homeostasis and inflammation management require immune functions. T-regulatory cells (Tregs) regulate PCOS's immune system, inflammation, insulin resistance, ovarian function, and homeostasis. Transforming growth factor βIII (TGF-βIII) and Cytotoxic-T-lymphocyte-associated-protein-4 (CTLA-4) receptors on the surfaces of Treg cells are important for controlling the immune system. The study included 68 PCOS patients and 22 non-PCOS women controls aged 20–45. The waist-hip ratio (WHR) determines obesity. We evaluated serum levels and gene expression of TGF-βIII and CTLA-4 via ELISA and real-time PCR. Women with PCOS had significantly higher …

Enhanced Optoelectronics Performance Of Hybrid Self Power Photodetectors Go: Tio2- Ad / N-Si Heterojunctions, Mohammed J. Alsultani, Maysoon F. Alias

Karbala International Journal of Modern Science

A GO:TiO₂/n-Si heterostructure has been submerged in an anthocyanin dye solution that extracted from the red cabbage plant creates a high responsivity, self-powered UV, and visible photodetectors fabricated by the spray pyrolysis technique. The GO concentrations are varied, whereas TiO₂ is fixed. Thin films' structure, shape, and optical characteristics were examined using X-ray diffraction, field emission scanning electron microscopy, and UV-Vis spectrophotometers respectively. Island-like polycrystalline film powders with grain boundaries and granular shapes are created. Two direct energy gaps between 3.33-3.02 and 2.39-2.04 eV exist in all films. J-V characteristics were examined. The saturation current density (J …

Fungi Of Lambuth: A Field Guide, Kelly Maust, Shawn P. Brown, Elizabeth Weston

Open Access Textbooks

Fungi of Lambuth is an open-access, beginner-level field guide designed to introduce University of Memphis, Lambuth faculty, staff, and students to the joys of mushroom hunting, and to provide an overview of the types of mushrooms that can be found right on our campus (located at 705 Lambuth Blvd. in Jackson, TN).

Genetics Of Mdh In Humans, Adam Haberman, Celeste N. Peterson

Biology: Faculty Scholarship

Malate dehydrogenase (MDH) performs key roles in metabolism, but little is known about its function specifically in human health and disease. In this minireview, we describe the incomplete state of our knowledge of human MDH genetics. Humans have three MDH genes with a total of four validated isoforms. MDH1 and MDH2 are widely expressed, while MDH1B is only expressed in a small subset of tissues. Many mutations in MDH1 and MDH2 have been identified in patients, but only a few have been studied to determine what symptoms they cause. MDH1 has been associated with cancer and a neurodevelopmental disorder. MDH2 …

Draft Genome Assemblies Of One Lactobacillus Gasseri Strain And Two Lactobacillus Jensenii Strains Isolated From Voided Urine Samples, Alex Kula, Natalie Stegman, Catherine Putonti

Biology: Faculty Publications and Other Works

We present the draft genome for three Lactobacillus strains isolated from female urine specimens: Lactobacillus gasseri UMB1673, Lactobacillus jensenii UMB1855, and Lactobacillus jensenii UMB5069. Focusing on strains within the female urinary microbiome can provide a more well-rounded understanding of the microbial community and its influence on health and disease.