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Conservation Of Intron And Intein Insertion Sites: Implications For Life Histories Of Parasitic Genetic Elements, Kristen Swithers, Ali Senejani, Gregory P. Fournier, Peter J. Gogarten

Biology and Environmental Science Faculty Publications

Background: Inteins and introns are genetic elements that are removed from proteins and RNA after translation or transcription, respectively. Previous studies have suggested that these genetic elements are found in conserved parts of the host protein. To our knowledge this type of analysis has not been done for group II introns residing within a gene. Here we provide quantitative statistical support from an analyses of proteins that host inteins, group I introns, group II introns and spliceosomal introns across all three domains of life. Results: To determine whether or not inteins, group I, group II, and spliceosomal introns are found …

"Freshwater Crabs And Shrimps (Crustacea: Decapoda) Of The Nile Basin" , Neil Cumberlidge

Book Sections/Chapters

No abstract provided.

High-Resolution, Long-Term Characterization Of Bacterial Motility Using Optical Tweezers, Lon Chubiz, Taejin Min, Patrick Mears, Christopher Rao, Ido Golding, Yann Chemla

Biology Department Faculty Works

We present a single-cell motility assay, which allows the quantification of bacterial swimming in a well-controlled environment, for durations of up to an hour and with a temporal resolution greater than the flagellar rotation rates of ∼100 Hz. The assay is based on an instrument combining optical tweezers, light and fluorescence microscopy, and a microfluidic chamber. Using this device we characterized the long-term statistics of the run-tumble time series in individual Escherichia coli cells. We also quantified higher-order features of bacterial swimming, such as changes in velocity and reversals of swimming direction.

Water Availability Directly Determines Per Capita Consumption At Two Trophic Levels, Kevin E. Mccluney, John L. Sabo

Biological Sciences Faculty Publications

Community ecology has long focused on energy and nutrients as currencies of species interactions. Evidence from physiological ecology and recent studies suggest that in terrestrial systems, water may influence animal behavior and global patterns of species richness. Despite these observations, water has received little attention as a currency directly influencing animal species interactions. Here, we show that the per capita interaction strength between predatory wolf spiders and their primary prey, field crickets, is strong (0.266) when predators and prey are maintained in ambient dry conditions, but is near zero (0.001) when water is provided ad libitum. Moreover, crickets consume 31-fold …

Isolation Of Fungi From Lake Vostok Accretion Ice, Scott O. Rogers, Tom D'Elia, Ram Veerapaneni, Vincent Theraisnathan

Biological Sciences Faculty Publications

Here we report the characterization of fungi from 10 accretion ice sections (3300-5100 y old) as well as two deep glacial ice sections that are close to the bottom of the glacier (1 000 000-2 000 000 y old) from the Vostok, Antarctica, 5G ice core. Fungi were characterized by fluorescence microscopy culturing and sequence analyses of ribosomal DNA internal transcribed spacers. A total of 270 fungal colonies were cultured from the accretion ice of subglacial Lake Vostok and an additional 14 from the glacial ice immediately above the accretion ice. Mean concentrations were 0-4.42 cells mL-1 ice meltwater of …

Bats And Bell Holes: The Microclimatic Impact Of Bat Roosting, Using A Case Study From Runaway Bay Caves, Jamaica, Joyce Lundberg, Donald A. Mcfarlane

WM Keck Science Faculty Papers

The microclimatic effect of bats roosting in bell holes (blind vertical cylindrical cavities in cave roofs) in Runaway Bay Caves, Jamaica, was measured and the potential impact of their metabolism on dissolution modelled. Rock temperature measurements showed that bell holes with bats get significantly hotter than those without bats during bat roosting periods (by an average of 1.1 °C). The relationship is clearest for bell holes with more than about 300 g aggregate bat body mass and for bell holes that are moderately wide and deep, of W:D ratio between 0.8 and 1.6. Measurement of temperature decay after abandonment showed …

A Note On The Thermal Ecology And Foraging Behaviour Of The Egyptian Fruit Bat, Rousettus Aegyptiacus, At Mt. Elgon, Kenya, Donald A. Mcfarlane, Joyce Lundberg

WM Keck Science Faculty Papers

The Egyptian fruit bat, Rousettus aegyptiacus, is an abundant and widely distributed African pteropid (Nowak, 1999). The species is unusual amongst pteropids in being an obligate cave-dweller (Kwiecinski & Griffiths, 1999), sometimes reaching colony sizes in the thousands (Kingdon, 1974). In the caves of Mt. Elgon National Park, western Kenya (1° 08′N, 34° 39′E), precision temperature loggers placed in major Rousettus roosts and intervening passages have allowed us to precisely monitor bat emergence and return times.

The major caves of Mt. Elgon National Park consist of geophagically modified tunnels and collapse chambers cut into Miocene-aged pyroclastic strata (Lundberg & …

The South Coast Crustacean Fishery. A Discussion Paper., Department Of Fisheries Western Australia

Fisheries Management Papers

Fishing for crustaceans including southern and western rock lobster and deep-sea crab species on the south coast of Western Australia began in the 1960s and has developed significantly through improvements in technology, vessel reliability and the risk and endeavour of some fishers. The expansion in the capacity of the fleet has lead to the development of two managed fisheries.

This paper provides a brief outline of the history of the fishery; details the fishing and management methods presently used; and discusses the options available for future management, particularly ways of limiting fishing effort.

Prawn Aquaculture In Western Australia. Final Esd Risk Assessment Report For Prawn Aquaculture., Department Of Fisheries Western Australia

Fisheries Management Papers

The Western Australian Department of Fisheries is responsible for the management of aquaculture in WA and is committed to implementing ESD. These principles are contained within the objectives of the Fish Resources Management Act 1994 and the Department is keen to demonstrate both to the Government and the broader community that these principles are being achieved. The Department developed a policy statement in 2002 - Policy for the Implementation of Ecologically Sustainable Development for Fisheries and Aquaculture within Western Australia - (Fletcher 2002) that described its direction to the Department on incorporating ESD within fisheries and aquaculture management.

Using the …

Amino Acid Residues Implicated In The Interaction Of Melanocortin Ligands And Their Receptors: A Study Of Mc2r Selectivity, Kristopher D. Veo

Electronic Theses and Dissertations

Melanocortin receptor ligand selectivity has been a question not easily answered. The inability to functionally express melanocortin 2 receptor (MC2R) has inhibited the study of why MC2R is only stimulated by ACTH, a melanocortin hormone. With the recent discovery of the MC2R accessory protein (MRAP), creating a heterologous system is now feasible. Using a general cell line like CHO-K1 cells, which do not express endogenous MCRs, we were able to create a heterologous expression system and test the selectivity of MC2R using analog variants of ACTH(1-24). Our results indicate an amino acid requirement in the C-terminal portion of ACTH(1-24) for …

The Influence Of Spatial Scale On Landcover And Avian Community Relationships Within The Upper Green River Watershed, Ky, Cabrina L. Hamilton

Mahurin Honors College Capstone Experience/Thesis Projects

Landscape ecology studies are needed to aid land managers and conservationists in developing management plans that will effectively improve avian population trends. This study uses riparian avian point count survey data and landcover data to examine the possible relationships between riparian avian communities and landcover within the Upper Green River watershed. How avian-landcover relationships change with increasing spatial scale is also examined. Results showed unexpected avian-landcover relationships for specific species. A landcover gradient from open and successional habitat to closed, forest habitat was most prevalent in the study area and explained most of the variation within the avian datasets. Riparian …

"The Status And Distribution Of Freshwater Crabs [West Africa]" , Neil Cumberlidge

Book Sections/Chapters

No abstract provided.

Function, Regulation, And Transcriptional Organization Of The Hemin Utilization Locus Of Bartonella Quintana, Nermi L. Parrow, Jasmin Abbott, Amanda R. Lockwood, James M. Battisti, Michael F. Minnick

Biological Sciences Faculty Publications

Bartonella quintana is a gram-negative agent of trench fever, chronic bacteremia, endocarditis, and bacillary angiomatosis in humans. B. quintana has the highest known hemin requirement among bacteria, but the mechanisms of hemin acquisition are poorly defined. Genomic analyses revealed a potential locus dedicated to hemin utilization (hut) encoding a putative hemin receptor, HutA; a TonB-like energy transducer; an ABC transport system comprised of three proteins, HutB, HutC, and HmuV; and a hemin degradation/storage enzyme, HemS. Complementation analyses with Escherichia coli hemA show that HutA functions as a hemin receptor, and complementation analyses with E. coli hemA tonB indicate that HutA …

Fluctuating Asymmetry In Elk Cervus Elaphus Antlers Is Unrelated To Environmental Conditions In The Greater Yellowstone Ecosystem, Scott L. Eggeman, Mark Hebblewhite, Julie Cunningham, Ken Hamlin

Biological Sciences Faculty Publications

Fluctuating asymmetry (FA) is a measure of the deviation from perfect bilateral symmetry, and has been used across mammals as a reliable indicator of environmental stress during growth and development. Antler size and symmetry can be an indicator of individual fitness and social rank among ungulates such as the North American elk Cervus elaphus. When environmental conditions are favourable, ungulates allocate additional resources to antler development to increase secondary sexual traits and enhance reproduction. We tested whether there was an appreciable change in antler length and the number of points as extreme climatic conditions (e.g. heavy snow and drought) …

Biofilms In Medicine, Marshall Gelbman

The Science Journal of the Lander College of Arts and Sciences

In 1862 Louis Pasteur introduced the “Germ Theory of Disease.” Subsequently the study of microbiology has flourished greatly and its medical significance has continuously grown. Many microbial organisms implicated in disease have been identified and studies. A general science of medical bacteriology has been determined and is widely taught. Such study has been largely based upon the activity of individual free-swimming (planktonic) cells and colonies that they form. However, microorganisms often form communities called biofilms which can have properties that very different from their planktonic predecessors. Biofilms are mucoid aggregates of microorganisms which tend to grow on surfaces exposed to …

Botulinum Toxin, David Moshayev

The Science Journal of the Lander College of Arts and Sciences

Botulinum toxin is a neurotoxic protein produced by the bacterium Clostridium botulinum. Although botulinum toxin is the cause of the disease botulism and can be used in a terrorist attack, there are also many other uses for botulinum toxin. Botox, a derivative of botulinum toxin, is used for cosmetic purposes. Botulinum toxin is also used in medicines to control certain conditions marked by involuntary muscle contractions. The objective of this paper is to present a strong review of botulinum toxin so that one can see all the good and bad that is botulinum.

Bisphosphonates And Osteonecrosis Of The Jaw, Chaya Leah Katz

The Science Journal of the Lander College of Arts and Sciences

Bisphosphonate-related Osteonecrosis of the Jaw (BRONJ) is a condition which, according to the American Association of Oral and Maxillofacial Surgeons (AAOMS), adversely affects between .8-12percent of the population, a small yet significant amount of adults. Osteonecrosis of the Jaw (ONJ) is characterized by the death of bone and suffering patients present with either a non-healing extraction socket or an exposed jawbone. In general, afflicted patients have been treated with a class of drugs known as the Bisphosphonates (BP). Bisphosphonates were originally developed in order to treat and manage many metastatic diseases of the bone and stabilize bone loss caused by …

Gestational Diabetes And Its Effects On The Fetus, Todd Pollack

The Science Journal of the Lander College of Arts and Sciences

Although the common effects of gestational diabetes on the fetus are known, the outcome of a diabetic gestation is ambiguous. There is concern for complications in the fetus at delivery due to enlarged size of the fetus, as well as concerns for birth defects, fetal distress, diabetes and obesity. Yet, although there is a correlation in the previous disorders and gestational diabetes, many of the mechanisms that cause these complications are unknown. By studying the pathology of gestational diabetes, researchers have learnt that the placenta controls fetal growth and provides a great deal of protection for the fetus. Therefore, many …

Reproductive Isolation Between Two Sympatric Simultaneous Hermaphroditic Shrimp, Lysmata Wurdemanni And L. Boggessi, Dong Zhang, Junda Lin, Jörg D. Hardege, Andrew L. Rhyne

Arts & Sciences Faculty Publications

To investigate pre- and post-zygotic isolation between two sympatric and phylogenetically related species of Lysmata shrimp, two assays were conducted in the laboratory: (1) no specific mate choice where mating between the two species was ‘forced’; (2) specific mate choice or preference where a female had a choice between conspecific and heterospecifc males. Behavioural studies reveal that female L. wurdemanni accepted only conspecific male shrimp, whereas L. boggessi females would mate with an interspecific male if there was no conspecific male present. When males of both species were present, L. boggessi females always mated with the conspecific male. Male L. …

Factors Affecting Breeding Territory Size And Placement Of The Florida Grasshoper Sparrow (Ammodramus Savannarum Floridanus), Jill Aldredge

Electronic Theses and Dissertations

For most taxa, maximizing fitness depends on maintaining access to adequate resources. Territories provide exclusive use of resources for an individual or a family group, thus facilitating successful reproduction. The economic defensibility of a territory depends on the quality, abundance, and distribution of its resources as well as the amount of competition that an individual must endure to maintain exclusive access. The benefits of defense must outweigh the costs for territoriality to be profitable. Territory owners may benefit from territories with high quality resources, but they also may incur greater costs defending these resources from competitors. In contrast, territories with …

Structural Studies Of Talin-Mediated Integrin Activation, Esen Bakhautdin

ETD Archive

Activation of heterodimeric (alpha/beta) integrin transmembrane receptors by the cytoskeletal protein talin is essential for many important cell adhesive responses including cell-extracellular matrix contact, cell motility and survival. A key step in this process involves interaction of phosphotyrosine-binding (PTB) domain in the N-terminal head of talin (talin-H) with integrin beta3membrane-proximal cytoplasmic tails (beta-MP-CTs). Compared to talin-H, intact talin exhibits low potency in inducing integrin activation. Using TROSY NMR spectroscopy, we found that the large C-terminal rod domain of talin (talin-R) interacts with talin-H and allosterically restrains talin in a closed conformation. Structural, mutational, and biochemical analyses demonstrate that talin-R specifically …

Homeostatic Regulation Of Interleukin-4-Mediated Cell Signaling, Rikhia Chakraborty

ETD Archive

Cytokines are intracellular messengers that activate multiple signaling pathways and regulate cell survival, differentiation, migration, apoptosis and immune responses. We are investigating the homeostatic control of cytokine-mediated cell signaling using interleukin-4 (IL-4) as a model cytokine. Protein tyrosine phosphorylation is essential for cytokine-dependent signal transduction through the Janus Kinase-Signal Transducer and Activator of Transcription (Jak-STAT) pathway. Therefore, protein tyrosine dephosphorylation is a key mechanism providing the homeostatic control of the pathway. Here, we have shown for the first time that immediately following ligand-dependent activation, IL-4 receptor induces an intracellular calcium flux via insulin receptor substrate (IRS)-phosphoinositide 3-kinase (PI3K)-phospholipase C (PLC)-gamma …

Role Of Kcnma1 In The Pathogenesis Of Gepd Syndrome, Wei Du

ETD Archive

No abstract provided.