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Catalog Of The Coreidae, Or Leaf-Footed Bugs, Of The New World, Richard J. Packauskas Jan 2010

Catalog Of The Coreidae, Or Leaf-Footed Bugs, Of The New World, Richard J. Packauskas

Fort Hays Studies Series

Studies on the New World Coreidae have languished for more than a century. Neglect of these often large, abundant, and occasionally economically important bugs has been due, I believe, to the lack of means to identify them. Most literature treating the New World Coreidae has been restricted to the North American fauna, except for the recent efforts of Brailovsky (1975 to 2007).


The Influence Of Sexual Selection On Behavioral And Physiological Mechanisms Underlying Reproductive Success In Male Cape Ground Squirrels (Xerus Inauris), Mary Beth Manjerovic Jan 2010

The Influence Of Sexual Selection On Behavioral And Physiological Mechanisms Underlying Reproductive Success In Male Cape Ground Squirrels (Xerus Inauris), Mary Beth Manjerovic

Electronic Theses and Dissertations

Sexual selection is considered a powerful evolutionary force responsible for the enormous diversity found in reproductive morphology, physiology, and behavior. I addressed questions related to selection in the Cape ground squirrel (Xerus inauris), a species characterized as highly social and promiscuous. These attributes often are responsible for variance in male reproductive success and as such, sexual selection theory predicts increased opportunity for sexual selection. I confirm that the predominant mechanism underlying genital evolution and competition for paternity in X. inauris is sperm competition. I find evidence that investment in sperm competition is costly and may reflect immunocompetence. I quantify reproductive …


A World Of Opportunists, The Parasitic Plants (Book Review), Sydne Record Jan 2010

A World Of Opportunists, The Parasitic Plants (Book Review), Sydne Record

Biology Faculty Research and Scholarship

No abstract provided.


Full Issue: Volume 4, Number 1 Jan 2010

Full Issue: Volume 4, Number 1

The Science Journal of the Lander College of Arts and Sciences

No abstract provided.


A Framework For Predicting And Managing Water Quality Impacts Of Mining On Streams: A User’S Guide, J. E. Cavanagh, J. Pope, J. S. Harding, D. Trumm, D. Craw, R. Rait, H. Greig, Dev Niyogi, R. Buxton, O. Champeau, A. Clemens Jan 2010

A Framework For Predicting And Managing Water Quality Impacts Of Mining On Streams: A User’S Guide, J. E. Cavanagh, J. Pope, J. S. Harding, D. Trumm, D. Craw, R. Rait, H. Greig, Dev Niyogi, R. Buxton, O. Champeau, A. Clemens

Biological Sciences Faculty Research & Creative Works

Coal and gold mining are important economic activities in New Zealand, and the West Coast of the South Island and Southland, for example, have long histories of mining. The process of mineral extraction inevitably results in environmental impacts, but few tools exist to help mining companies and regulators assess and predict environmental impacts of mining operations. This framework has been developed as part of a collaborative research programme with key mining partners to assist with planning of future mine developments on the West Coast and in Southland. This framework focuses on water quality issues associated with coal and gold mining, …


Shearwater Foraging In The Southern Ocean: The Roles Of Prey Availability And Winds, B Raymond, Scott A. Shaffer, S Sokolov, E Woehler, D P. Costa, L Einoder, M Hindell, G Hosie, M Pinkerton, P M. Sagar, D Scott, A Smith, D R. Thompson, C Vertigan, H Weimerskirch Jan 2010

Shearwater Foraging In The Southern Ocean: The Roles Of Prey Availability And Winds, B Raymond, Scott A. Shaffer, S Sokolov, E Woehler, D P. Costa, L Einoder, M Hindell, G Hosie, M Pinkerton, P M. Sagar, D Scott, A Smith, D R. Thompson, C Vertigan, H Weimerskirch

Faculty Publications, Biological Sciences

Background Sooty (Puffinus griseus) and short-tailed (P. tenuirostris) shearwaters are abundant seabirds that range widely across global oceans. Understanding the foraging ecology of these species in the Southern Ocean is important for monitoring and ecosystem conservation and management. Methodology/Principal Findings Tracking data from sooty and short-tailed shearwaters from three regions of New Zealand and Australia were combined with at-sea observations of shearwaters in the Southern Ocean, physical oceanography, near-surface copepod distributions, pelagic trawl data, and synoptic near-surface winds. Shearwaters from all three regions foraged in the Polar Front zone, and showed particular overlap in the region around 140°E. Short-tailed shearwaters …


Niche Partitioning Among And Within Sympatric Tropical Seabirds Revealed By Stable Isotope Analysis, H S. Young, D J. Mccauley, R Dirzo, R D. Dunbar, Scott A. Shaffer Jan 2010

Niche Partitioning Among And Within Sympatric Tropical Seabirds Revealed By Stable Isotope Analysis, H S. Young, D J. Mccauley, R Dirzo, R D. Dunbar, Scott A. Shaffer

Faculty Publications, Biological Sciences

The low productivity and unpredictable nature of resources in tropical waters would appear to make resource partitioning among predators difficult. Yet, stable isotope data from the present study suggest that substantial resource partitioning occurs among tropical seabird communities, both between and within species. In the present study, we compared δ13C and δ15N levels among 8 sympatric tropical seabird species. For a subset of these species, we also examined isotopic levels across years, breeding periods, and sexes. When breeding and non-breeding periods were both considered, we found that all species occupied distinct isotopic niches across at least one time period. Resource …


Batrachochytrium Dendrobatidis Detected In Amphibians From National Forests In Eastern Texas, Usa, Daniel Saenz, Brendan T. Kavanagh, Matthew Kwiatkowski Jan 2010

Batrachochytrium Dendrobatidis Detected In Amphibians From National Forests In Eastern Texas, Usa, Daniel Saenz, Brendan T. Kavanagh, Matthew Kwiatkowski

Faculty Publications

The amphibian disease chytridiomycosis, caused by the pathogenic fungus Batrachochytrium dendrobatidis (Bd, Longcore et al. 1999), is well known as a major threat to amphibians resulting in mass die-offs and population declines throughout the world (Berger et al. 1998; Blaustein and Keisecker 2002; Daszak et al. 2003; McCallum 2005; Rachowicz et al. 2006). Batrachochytrium dendrobatidis has been detected on amphibians from sites across North America (Ouellet et al. 2005; Woodhams et al. 2008) and appears to be most prevalent in the western and the northeastern United States (Longcore et al. 2007; Schlaepfer et al. 2007). Whereas infected anurans also have …


Development And Characterization Of 16 Microsatellite Markers For The Louisiana Pine Snake, Pituophis Ruthveni, And Two Congeners Of Conservation Concern, Matthew Kwiatkowski, Christopher M. Somers, Ray G. Poulin, D. Craig Rudolph, Jessica Martino, Tracey D. Tuberville, Cris Hagen, Stacey L. Lance Jan 2010

Development And Characterization Of 16 Microsatellite Markers For The Louisiana Pine Snake, Pituophis Ruthveni, And Two Congeners Of Conservation Concern, Matthew Kwiatkowski, Christopher M. Somers, Ray G. Poulin, D. Craig Rudolph, Jessica Martino, Tracey D. Tuberville, Cris Hagen, Stacey L. Lance

Faculty Publications

We isolated and characterized 16 microsatellite loci from the Louisiana pine snake, Pituophis ruthveni. Loci were screened in 24 individuals from locations throughout its distribution in Louisiana and Texas. The number of alleles per locus ranged from 4 to 12, observed heterozygosity ranged from 0.200 to 0.875, and the probability of identity ranged from 0.043 to 0.298. We examined cross-species amplification at these loci in P. catenifer (bullsnakes and gopher snakes) and P. melanoleucus (pine snakes). These new markers provide tools for examining the conservation genetics of this species complex. Louisiana pine snakes face numerous threats: population densities are extremely …


Occurrence Of Anisophylly And Anisoclady Within The Amaranthaceae [Abstract], Donald B. Pratt, Lynn G. Clark Jan 2010

Occurrence Of Anisophylly And Anisoclady Within The Amaranthaceae [Abstract], Donald B. Pratt, Lynn G. Clark

Faculty Publications

No abstract provided.


Surveys Of Stylisma Pickeringii Var. Pattersonii (Convolvulaceae), Its Associated Plant Species, And Its Insect Visitors, Ann E. Claerbout, Brent L. Todd, Janice M. Coons, Henry R. Owen, Donald W. Webb, John E. Ebinger, William E. Mcclain Jan 2010

Surveys Of Stylisma Pickeringii Var. Pattersonii (Convolvulaceae), Its Associated Plant Species, And Its Insect Visitors, Ann E. Claerbout, Brent L. Todd, Janice M. Coons, Henry R. Owen, Donald W. Webb, John E. Ebinger, William E. Mcclain

Faculty Research & Creative Activity

Stylisma pickeringii var. pattersonii (Convolvulaceae) is endangered in Illinois and Iowa, and occurs in scattered populations in other states. During 1999 and 2000, two insect species previously unreported from Illinois were observed visiting its flowers. This study was undertaken to survey additional insect visitors, as well as to characterize the plant community where S. pickeringii occurs. The objectives were to survey: 1) floral traits (anthesis and flower density) of S. pickeringii, 2) associated plant species, and 3) insect visitor characteristics. Floral traits were determined and associated plant species surveyed in Mason County (degraded hay field on private property) and Henderson …


Liana Host Preference And Implications For Deciduous Forest Regeneration, Laura M. Ladwig, Scott J. Meiners Jan 2010

Liana Host Preference And Implications For Deciduous Forest Regeneration, Laura M. Ladwig, Scott J. Meiners

Faculty Research & Creative Activity

Lianas have the potential to shape forest communities and alter forest regeneration. However, impacts of lianas on forest regeneration, particularly in temperate forests, are largely unstudied. To understand potential liana impacts on the community we need to first know the location and intensity of liana burdens on host trees. We examined liana-tree host references within a series of young regenerating deciduous forests in the Piedmont region of New Jersey, USA. Established trees ($ 5 cm dbh) and the lianas associated with each tree were surveyed in 2008. The five most abundant liana species were Celastrus orbiculatus, Lonicera japonica, Parthenocissus quinquefolia, …


Spatiotemporal Dynamics Of Lianas During 50 Years Of Succession To Temperate Forest, Laura Ladwig, Scott J. Meiners Jan 2010

Spatiotemporal Dynamics Of Lianas During 50 Years Of Succession To Temperate Forest, Laura Ladwig, Scott J. Meiners

Faculty Research & Creative Activity

Although they are important components of forest communities, the general ecology and spatiotemporal patterns of temperate lianas during forest regeneration are largely unknown. The dependence of lianas on other plants for physical support makes them a potentially important driver of community dynamics. We examined 50 years of vegetation data from an old-field succession study to determine the dynamics and community controls on liana expansion within the Piedmont region of New Jersey, USA. Four lianas, Lonicera japonica, Parthenocissus quinquefolia, Toxicodendron radicans, and Vitis spp., occurred in enough abundance for detailed analyses. In general, liana cover peaked during mid-succession (20–30 years post-abandonment) …


Allelopathic Effects Of Goldenrod Species On Turnover In Successional Communities, Nikki Pisula, Scott J. Meiners Jan 2010

Allelopathic Effects Of Goldenrod Species On Turnover In Successional Communities, Nikki Pisula, Scott J. Meiners

Faculty Research & Creative Activity

While goldenrod species are often found to be allelopathic in laboratory settings, its importance in controlling plant community dynamics has been much more difficult to assess. We designed a study to determine whether allelopathy is related to the success of goldenrods in abandoned agricultural land. To accomplish this, we conducted laboratory bioassays for six co-occurring goldenrod species and compared these results to the cover and impacts of these species in the field. We determined the germination responses of two target species to a gradient of leaf extract concentrations to assess the allelopathic potential of these goldenrods. We also used long-term …


Dna Double-Strand Breakage As An Endpoint To Examine Metal And Radionuclide Exposure Effects To Water Snakes On A Nuclear Industrial Site, Stephanie M. Murray, Karen F. Gaines, James M. Novak, Michael Gochfeld, Joanna Burger Jan 2010

Dna Double-Strand Breakage As An Endpoint To Examine Metal And Radionuclide Exposure Effects To Water Snakes On A Nuclear Industrial Site, Stephanie M. Murray, Karen F. Gaines, James M. Novak, Michael Gochfeld, Joanna Burger

Faculty Research & Creative Activity

This study examined metal levels (especially U and Ni) in the tail tissues of water snakes from contaminated (Tim’s Branch) and reference areas on the Department of Energy’s Savannah River Site (SRS). Home ranges of snakes were quantified to determine the ratio of the habitat that they use in relation to the contaminated areas to better estimate exposure Compared to conventional methods that do not. The exposure assessment indicated that water snakes in the contaminated areas could expect U exposure at 3–4 orders of magnitude greater than the Agency for Toxic Substances and Disease Registry’sMinimum Risk Level (MRL) from ingestion …


Feathers As Bioindicators Of Pcb Exposure In Clapper Rails, Jay W. Summers, Karen F. Gaines, N. Garvin, Warren L. Stephens Jr., James C. Cumbee Jr., Gary L. Mills Jan 2010

Feathers As Bioindicators Of Pcb Exposure In Clapper Rails, Jay W. Summers, Karen F. Gaines, N. Garvin, Warren L. Stephens Jr., James C. Cumbee Jr., Gary L. Mills

Faculty Research & Creative Activity

In this study we used feathers to biomonitor exposure to the polychlorinated biphenyl (PCB) Aroclor 1268 congener mixture in clapper rails (Rallus longirostris). This species has been used as an indicator species of environmental damage for the LCP superfund site located in Brunswick, GA, USA which is contaminated with Aroclor 1268, a congener mixture that has been used in limited amounts elsewhere and therefore can be used as a contaminant marker. The Aroclor 1268 congener mixture, including congener profiles, were quantified in feathers using gas chromatography (GC). Concurrently, each sample was quantified for the total Aroclor 1268 congener mixture using …


A Sketch-Based Language For Representing Uncertainty In The Locations Of Origin Of Herbarium Specimens, Barry J. Kronenfeld, Andrew Weeks Jan 2010

A Sketch-Based Language For Representing Uncertainty In The Locations Of Origin Of Herbarium Specimens, Barry J. Kronenfeld, Andrew Weeks

Faculty Research and Creative Activity

Uncertainty fields have been suggested as an appropriate model for retrospective georeferencing of herbarium specimens. Previous work has focused only on automated data capture methods, but techniques for manual data specification may be able to harness human spatial cognition skills to quickly interpret complex spatial propositions. This paper develops a formal modeling language by which location uncertainty fields can be derived from manually sketched features. The language consists of low-level specification of critical probability isolines from which a surface can be uniquely derived, and high-level specification of features and predicates from which low-level isolines can be derived. In a case …


Review Of The Timber Press Dictionary Of Plant Names, Henry R. Owen Jan 2010

Review Of The Timber Press Dictionary Of Plant Names, Henry R. Owen

Faculty Research & Creative Activity

No abstract provided.


Liana Host Preference And Implications For Deciduous Forest Regeneration, Laura Ladwig, Scott Meiners Jan 2010

Liana Host Preference And Implications For Deciduous Forest Regeneration, Laura Ladwig, Scott Meiners

Faculty Research & Creative Activity

Lianas have the potential to shape forest communities and alter forest regeneration. However, impacts of lianas on forest regeneration, particularly in temperate forests, are largely unstudied. To understand potential liana impacts on the community we need to first know the location and intensity of liana burdens on host trees. We examined liana-tree host references within a series of young regenerating deciduous forests in the Piedmont region of New Jersey, USA. Established trees ($ 5 cm dbh) and the lianas associated with each tree were surveyed in 2008. The five most abundant liana species were Celastrus orbiculatus, Lonicera japonica, Parthenocissus quinquefolia, …


Bat Habitat Use And Roost Tree Selection For Northern Long-Eared Myotis (Myotis Septentrionalis) In North-Central Ohio, Timothy J. Krynak Jan 2010

Bat Habitat Use And Roost Tree Selection For Northern Long-Eared Myotis (Myotis Septentrionalis) In North-Central Ohio, Timothy J. Krynak

Masters Theses

Understanding roosting behavior and habitat use of bats is an important component when unraveling life histories and their ecology. Ohio remains under-represented in published information of bats compared to surrounding states. This large scale survey in 2002–2003 and Myotis septentrionalis radio telemetry study in 2005 is one of the few conducted within the state and is the first in Ohio’s North-Central region. It is also the first study conducted where net sites were chosen randomly and spatially distributed to adequately survey bat populations within Cuyahoga Valley National Park and Cleveland Metroparks. This survey documented seven species (n = 668), with …


Nutrient Flux, Uptake, And Transformation In A Spring-Fed Stream In The Missouri Ozarks, Usa, Dev Niyogi, Janet M. Bandeff, Cem Selman, Drew E. Menke Jan 2010

Nutrient Flux, Uptake, And Transformation In A Spring-Fed Stream In The Missouri Ozarks, Usa, Dev Niyogi, Janet M. Bandeff, Cem Selman, Drew E. Menke

Biological Sciences Faculty Research & Creative Works

We examined nutrient flux, uptake, and transformation along a spring-fed stream in the Ozark region of Missouri, USA, over the year 2006. Water in Mill Creek originates from several springs, with a single spring contributing over 90% of the stream discharge during much of the year of study. Soluble reactive phosphate concentrations were usually low (< 10 lg L-1) along Mill Creek but peaked during high discharge. Concentrations of dissolved inorganic nitrogen (DIN) were relatively high in the spring water, mainly as nitrate, but usually declined across a small pond and the 10-km length of Mill Creek. During low flows in …


Small Heat Shock Protein Responses Differ Between Chaparral Shrubs From Contrasting Microclimates, Charles A. Knight Jan 2010

Small Heat Shock Protein Responses Differ Between Chaparral Shrubs From Contrasting Microclimates, Charles A. Knight

Biological Sciences

Small heat shock protein (sHsp) responses were studied for two evergreen perennial shrubs in the northern California chaparral; one common on warm, south-facing slopes (Ceanothus cuneatus), and the other on cooler, north-facing slopes (Prunus ilicifolia). Small Hsp expression was induced experimentally for field collected leaves. Leaf collections were made where the species co-occur. Small Hsp expression was quantified using two antibodies, one specific to a chloroplast 22 kD sHsp and another that detects a broad range of sHsps. Differences between chloroplast sHsp accumulation, which protects thermally labile proteins in PSII, and the general sHsp response were …


On The Relationship Between Pollen Size And Genome Size, Charles A. Knight, Rachel B. Clancy, Lars Götzenberger, Leighton Dann, Jeremy M. Beaulieu Jan 2010

On The Relationship Between Pollen Size And Genome Size, Charles A. Knight, Rachel B. Clancy, Lars Götzenberger, Leighton Dann, Jeremy M. Beaulieu

Biological Sciences

Here we test whether genome size is a predictor of pollen size. If it were, inferences of ancient genome size would be possible using the abundant paleo-palynolgical record. We performed regression analyses across 464 species of pollen width and genome size. We found a significant positive trend. However, regression analysis using phylogentically independent contrasts did not support the correlated evolution of these traits. Instead, a large split between angiosperms and gymnosperms for both pollen width and genome size was revealed. Sister taxa were not more likely to show a positive contrast when compared to deeper nodes. However, significantly more congeneric …


Effects Of Yogurt Starter Cultures On The Survival Of Lactobacillus Acidophilus, Elizabeth W. Ng, Marie Yeung, Phillip S. Tong Jan 2010

Effects Of Yogurt Starter Cultures On The Survival Of Lactobacillus Acidophilus, Elizabeth W. Ng, Marie Yeung, Phillip S. Tong

Biological Sciences

Recognized to confer health benefits to consumers, probiotics such as Lactobacillus acidophilus are commonly incorporated into fermented dairy products worldwide; among which yogurt is a popular delivery vehicle. To materialize most of the putative health benefits associated with probiotics, an adequate amount of viable cells must be delivered at the time of consumption. However, the loss in their viabilities during refrigerated storage has been demonstrated previously. This study focused on the effects of yogurt starter cultures on the survival of five strains of L. acidophilus, with emphases on low pH and acid production. Differential survival behavior between L. acidophilus strains …


Using On‐Line Data Sources To Allow Students To Test Hypotheses About River Flow And Effects On Remotely Sensed Coastal Ocean Properties., Lawrence B. Cohoon, Kristin M. Hardy, Dustin M. Allen Jan 2010

Using On‐Line Data Sources To Allow Students To Test Hypotheses About River Flow And Effects On Remotely Sensed Coastal Ocean Properties., Lawrence B. Cohoon, Kristin M. Hardy, Dustin M. Allen

Biological Sciences

This exercise shows students how to relate remotely sensible properties of coastal waters to variations in river discharge using on‐line data resources. Students can then test hypotheses about the effects of climate changes (drought and wet periods), anthropogenic impacts (urbanized, agricultural, or undeveloped watersheds), or seasonality on river discharges and their consequences, if any, on coastal water quality as determined from remotely sensed properties. River flow has been measured for various periods of time, in some cases from almost the beginning of the 20th century, at many locations throughout the U.S. by the U.S. Geological Survey, with data on …


Transforming Growth Factor - Beta (Tgfß) Stimulated Isoform Specific Activation Of Akt2 Via Ras Mediates Epithelial-Mesenchymal Transition (Emt), Praveen Chander Jan 2010

Transforming Growth Factor - Beta (Tgfß) Stimulated Isoform Specific Activation Of Akt2 Via Ras Mediates Epithelial-Mesenchymal Transition (Emt), Praveen Chander

ETD Archive

TGFß induces epithelial-mesenchymal transdifferentiation (EMT) accompanied by cellular differentiation and migration. EMT has emerged as a fundamental process governing embryonic development, adult tissue homeostasis and metastatic progression. Our lab had earlier identified a post-transcriptional pathway by which TGFß modulates expression of EMT-specific proteins. It was shown that heterogeneous nuclear ribonucleoprotein E1 (hnRNP E1) binds a structural, 33 nucleotides (nt) TGF beta-activated translation (BAT) element in the 3'-UTR of disabled-2 (Dab2) and interleukin-like EMT inducer (ILEI)transcripts, and repress their translation. This inhibition is removed following hnRNP E1 phosphorylation by activated Akt2. We now show that specific activation of Akt2, and not …


Fur Versus Feathers: Pollen Delivery By Bats And Hummingbirds, And Consequences For Pollen Production, Nathan Muchhala, James Thomson Jan 2010

Fur Versus Feathers: Pollen Delivery By Bats And Hummingbirds, And Consequences For Pollen Production, Nathan Muchhala, James Thomson

Biology Department Faculty Works

One floral characteristic associated with bat pollination (chiropterophily) is copious pollen production, a pattern we confirmed in a local comparison of hummingbird- and bat-adapted flowers from a cloud forest site in Ecuador. Previous authors have suggested that wasteful pollen transfer by bats accounted for the pattern. Here we propose and test a new hypothesis: bats select for increased pollen production because they can efficiently transfer larger amounts of pollen, which leads to a more linear male fitness gain curve for bat-pollinated plants. Flight cage experiments with artificial flowers and flowers of Aphelandra acanthus provide support for this hypothesis; in both …


Maria Sibylla Merian's Frogs, Kay Etheridge Jan 2010

Maria Sibylla Merian's Frogs, Kay Etheridge

Biology Faculty Publications

Maria Sibylla Merian (German, 1647-1717) is best known for her magnificent 1705 publication, Metamorphosis insectorum surinamensium, although she published earlier works on insect metamorphosis. Merian wrote the text and painted all of the illustrations for her books, and for the early volumes she produced most of the engravings. Contemporary scholarship has focused primarily on Merian's detailed images of lepidopteran and host plant life cycles, but Merian's Surinam album also portrays anuram metamorphosis, including the first European depiction of Pipa pipa.


Mathematical Biology At An Undergraduate Liberal Arts College, Stephen C. Adolph, Lisette G. De Pillis Jan 2010

Mathematical Biology At An Undergraduate Liberal Arts College, Stephen C. Adolph, Lisette G. De Pillis

All HMC Faculty Publications and Research

Since 2002 we have offered an undergraduate major in Mathematical Biology at Harvey Mudd College. The major was developed and is administered jointly by the mathematics and biology faculty. In this paper we describe the major, courses, and faculty and student research and discuss some of the challenges and opportunities we have experienced.


Jane: A New Tool For The Cophylogeny Reconstruction Problem, Chris Conow, Daniel Fielder '11, Yaniv J. Ovadia '10, Ran Libeskind-Hadas Jan 2010

Jane: A New Tool For The Cophylogeny Reconstruction Problem, Chris Conow, Daniel Fielder '11, Yaniv J. Ovadia '10, Ran Libeskind-Hadas

All HMC Faculty Publications and Research

Background

This paper describes the theory and implementation of a new software tool, called Jane, for the study of historical associations. This problem arises in parasitology (associations of hosts and parasites), molecular systematics (associations of orderings and genes), and biogeography (associations of regions and orderings). The underlying problem is that of reconciling pairs of trees subject to biologically plausible events and costs associated with these events. Existing software tools for this problem have strengths and limitations, and the new Jane tool described here provides functionality that complements existing tools.

Results

The Jane software tool uses a polynomial time dynamic …