Digital Commons Network^™

Microsatellites Reveal The Population Genetic Structure Of Yellow Perch In Minnesota, Megan Boche

Journal of Earth and Life Science

When analyzing a population’s genetic makeup, looking at variation of individuals and populations is a crucial factor. The management of yellow perch will be aided by this information particularly in regard to stocking or relocation. Microsatellite loci were used to analyze the genetic population structure of yellow perch Perca flavescens within and among 29 sampling areas throughout Minnesota’s basins. Seven microsatellite DNA loci were evaluated, with heterozygosities ranging from 0.41 to 0.78. The Lower Mississippi basin samples showed higher numbers of alleles per locus and greater expected heterozygosities compared to other basins, with Lake Pepin (PEP) exhibiting the highest average …

Marine Heatwave Response Plan For Western Australia’S Wild Capture Fisheries And Aquaculture, Department Of Primary Industries And Regional Development, Western Australia

Fisheries Management Papers

The purpose of the Western Australian wild capture fisheries and aquaculture marine heatwave response plan (the Plan) is to document the Department’s approach for identifying and responding to the hazard of a marine heatwave on wild catch fisheries (commercial, recreational, charter and customary) and aquaculture resources within the geographic boundaries of WA. It provides risk reduction strategies and establishes best-practice processes for each stage of the hazard management and response continuum, ensuring that DPIRD is able to adequately prepare for, respond to, and recover from marine heatwave events. This Plan operates in conjunction with WA’s existing aquatic resource management framework, …

Homeostatic Influence Of Fig4 Outside Of The Fab1-Vac14-Fig4 Complex In Saccharomyces Cerevisiae, Hannah E. Reeves, Anna King, Imran Khan, Asha Thomas, Corey Chung, Anirudan Sivaprakash, Harrison A. Hall, Cole Mcguire, Victoria Cruz, Alim Habib, Lauren Dotson, Sophia R. Lee, Caroline L. Darbro, Bethany S. Strunk

Biology Faculty Research

The lipid phosphatase Fig4 is conserved in all eukaryotes and is associated with human neurological diseases for which there are currently no specific therapies. Fig4 functions in both the production and turnover of its lipid substrate, PI3,5P2, through participation in the Fab1-Vac14-Fig4 complex with its opposing kinase Fab1. The molecular mechanisms through which Fig4 influences PI3,5P2 production are not fully understood but are believed to require Fig4 binding to the scaffold protein Vac14. We unexpectedly found that multiple Fig4 disease-related mutants that are impaired in binding to the Fab1-Vac14-Fig4 complex dominantly confer tolerance to rapamycin, an inhibitor of the Target …

Developmental Regulation Of Corazonin, Eclosion Hormone, And Bursicon Messages And Rnai Suppression Of Corazonin In Adult Female American Dog Ticks, Dermacentor Variabilis, Anirudh Dhammi, Brooke Bissinger, Loganathan Ponnusamy, Daniel E. Sonenshine, R. Michael Roe

Biological Sciences Faculty Publications

The insect molting process is critical to growth and development and is regulated in part by the neuropeptides corazonin, eclosion hormone, and α and β bursicon. We found messages in a synganglion transcriptome from adult, female American dog ticks, Dermacentor variabilis (that do not molt), with a high similarity to the larval insect neuropeptides that control molting. The phylogenetic analysis of the tick putative neuropeptides compared to other arthropods is discussed in detail. The relative gene expression of these peptides was determined by quantitative PCR during the following adult developmental stages: (i) virgin, unfed 0–24 h after entering the adult …

Schistosoma Mansoni Infection Causes Consistent Changes To The Fecal Bacterial Microbiota Of Mice Across And Within Sites, Mariam A. Mhanna, David T. Gauthier, Lisa M. Shollenberger

Biological Sciences Faculty Publications

Eggs of Schistosoma mansoni are produced by adult female worms in mesenteries of infected hosts. Eggs can cross the intestinal barrier and form granulomas in the tissue or breach and exit the host through fecal excretion. These interactions may affect the host microbiome assemblages. Given the potential for schistosomal alteration of host gut microbiome and subsequent effects on the fecal bacterial composition, it is important to conduct controlled microbiome studies on model animals. While pursuing these studies, it is important to take into account the different conditions in which microbiome studies are conducted and their consequent impacts on variability and …

Assessing Relatedness Of Copperbelly Water Snakes In A Captive Breeding Program, Dehlia Deriemaker

Senior Honors Theses and Projects

Breeding threatened and endangered animals in captivity and their subsequent release can help supplement wild populations. Within captive breeding programs, maintaining genetic diversity is an important consideration for ensuring the survival of a species as a whole. Preserving genetic diversity increases population persistence, as it may offer a better chance for a species to adapt to a changing environment. The Copperbelly Water Snake (Nerodia erythrogaster neglecta, CWS) is listed as threatened by the U.S. Fish and Wildlife Service. In an effort to aid CWS recovery efforts, the Toledo Zoo manages a captive breeding program initially consisting of nine adult and …

Supplemental Feeding Alters Foraging Behaviors Of Tarantulas In Their Natural Habitat (Aphonopelma Hentzi), Annalyse Leach Brogan

Senior Honors Theses and Projects

Foraging success is a crucial factor in survival and reproductive success for many animals. One mechanism that can improve an organism’s foraging success is foraging plasticity, or the organism’s ability to alter their behavior in response to environmental changes. This study aims to evaluate if the Colorado Brown Tarantula, Aphonopelma hentzi, a long-lived, sit-andwait predator will use foraging plasticity in response to increased prey encounters. I predicted that tarantulas with more prey encounters will have a higher body condition index, shorter foraging duration, and shorter distances traveled from the burrows. I conducted a field study on A. hentzi in their …

Factors Influencing The Discovery And Use Of Carrion By Vertebrate Scavengers From Human-Induced Mass-Mortality Events, Samantha J. Leivers, Michael J. Bodenchuk, Tyler A. Campbell, John M. Tomeček

Human–Wildlife Interactions

Scavengers play critical roles in ecosystem health and stability, and both biotic and abiotic factors can influence scavenger guild dynamics. Carrion is often limited both temporally and spatially on the landscape, but mass mortality events (MMEs)—in which there is an influx of carrion biomass on the landscape—may result in different scavenger community dynamics compared to when carrion is scarcely distributed. In this study, we investigated factors affecting the discovery and use of carrion by a natural, unharrassed scavenger guild during wild pig (Sus scrofa) MMEs conducted at East Foundation’s San Antonio Viejo Ranch in South Texas, USA. We …

Body Size Distributions Of Riverine Freshwater Plankton Communities, Staci Ann Reynolds

Dissertations and Theses

The individual size distribution (ISD) is an individual based model that estimates the relative abundance of individual body sizes in a community. ISD’s slope or lambda (λ) gives insight into the communities’ food web and energy transfer. Climate change is expected to shift mean body sizes and λ as it increases individuals’ energy demands. Alterations in food webs and spatial distribution throughout the middle Missouri River basin may also have an impact on these communities λ. In a mesocosm experiment and field study, planktonic communities were sampled and had body sizes measured. Generalized linear mixed models were fit to calculate …

Jmorph Summary Data Cownose And Eagle Ray, Frank E. Fish

Biology Data Repository

The data are for the examination of hydrodynamic lift of the cephalic lobes of the cownose ray and spotted eagle ray. Data are from flow tank test of model heads of the two species.

Sea Turtle Turning, Frank E. Fish

Biology Data Repository

Data are for the analysis of the kinematics of turning by juvenile sea turtles.

Wild Horse Overpopulation- Consequences And Environmental Effects, Tessa M. Eslick Ms.

Undergraduate Theses, Professional Papers, and Capstone Artifacts

When considering wild horse overpopulation, there are many different facets of the issue that need to be addressed. Wild horse overpopulation is a significant issue across the American West, particularly on lands managed by the Bureau of Land Management( BLM). The largest populations are often found in Nevada, other states include California, Oregon, Utah, Wyoming, Washington, and Arizona. Whether there are thousands of horses on many acres of land, or hundreds spread across smaller reservations or public lands, the effects of their overpopulation remain as imminent as ever. Overpopulation is causing ecological damage and strain on resources leading to concerns …

Aquatic Invertebrate Populations In Roadside Wetlands In Relation To Water Characteristics, Ellen P. Isakson

Journal of Earth and Life Science

The continual habitat destruction and draining of wetland systems makes the need to understand the ecology of roadside wetlands all the more necessary. Roadside wetlands provide valuable habitat to countless aquatic invertebrates, which can provide insight into the health of the wetland system due to their diversity. The objective of this study was to analyze the populations of aquatic invertebrates in roadside wetlands in relation to water characteristics such as pH, salinity, conductivity, water depth and temperature, and dissolved oxygen. This was done by collecting samples of invertebrate populations from roadside wetlands, in addition to data on water quality characteristics …

Introductory Biology Ii Lab Manual, Melissa A. Storm

OER Collection

Explore the diversity of life on the planet Earth with a focus on organisms found in the Southeast of the United States, examine the evolutionary relationships between organisms and the ways in which scientists are currently expanding their understanding of those relationships every day through this BIO 102 Lab Manual

How to use this book: 

Each unit of this book represents the information you will learn during a week of lab class. Within each unit you will find types of information to help you learn the content.

At the beginning of each unit, you will find lists of reinforced skills …

Elucidating The Non-Shivering Thermogenesis Response In The Black-Capped Chickadee (Poecile Atricapillus), Sweta Chand

Dissertations and Theses

The adaptation of small birds to cold environments involves mechanisms for both heat conservation and heat generation. While minimizing heat loss reduces the energy needed to maintain body temperature, thermogenesis remains essential. Shivering and non-shivering thermogenesis (NST) are two likely mechanisms supporting cold adaptation in small avian species. Although sarcolipin (SLN) aids NST in small mammals, studies in birds such as Dark- eyed Juncos have shown no increase or even a decrease in SLN expression during cold exposure, suggesting limited involvement. This may reflect biological differences or limitations of mRNA- focused sequencing, which excludes long non-coding RNAs (lncRNAs) capable of …

Spatial Implications Of Potential Treeline Campfire Restrictions In Selected Usfs-Managed Colorado Wildernesses, Rebecca Hippensteel

Masters Projects

High-elevation ecosystems in Colorado’s Wilderness areas are ecologically sensitive and particularly vulnerable to campfire impacts, which can damage vegetation, alter soil chemistry, and degrade wilderness character. This study presents a preliminary proof of concept evaluating the spatial implications of banning campfires at or above 11,000 feet—used here as a proxy for treeline—in twelve U.S. Forest Service-managed Wilderness areas. Using 30-meter resolution Digital Elevation Models from the USGS National Map and Earth Explorer, a raster-based analysis in ArcGIS Pro identified and quantified acreage above 11,000 feet. Across the twelve Wilderness areas, 268,601 acres were found to lie above treeline, representing an …

Diversification Of Avifauna In The Darién Highland Region: Ecological Niche Modeling, Phylogeography And Morphology To Explore Speciation In The Montane Species Myadestes Coloratus, Chlorospingus Tacarcunae And Margarornis Bellulus., Jorge L. Garzon Vasquez Mrs

Theses and Dissertations

Montane regions in the Neotropics are hotspots of endemism and biodiversity, yet their species are especially vulnerable to the impacts of climate change and geographic isolation. This thesis investigates the evolutionary and ecological dynamics of three bird species endemic to the Darién Highlands of eastern Panama: Myadestes coloratus, Chlorospingus tacarcunae, and Margarornis bellulus. Through an integrative approach combining ecological niche modeling, morphometric analysis, and genomic data from ultraconserved elements (UCEs) and mitochondrial DNA, the study explores the historical biogeography, current distribution patterns, population structure, and phenotypic differentiation of these montane taxa. Ecological niche models revealed that suitable habitat …

Effects Of Increased Temperatures And Migratory Status On Passerine Chick Rearing Phenology And Caterpillar Prey Synchrony, Marissa Calvert

College of Graduate Studies: Theses & Dissertations

Many species across the globe have been observed to shift the seasonal timing of life history events in response to climate change-induced shifts in their local environments. However, individual species vary greatly in the direction and magnitude of these phenological shifts. Variation in phenological responsiveness to climate change among interacting species can lead to phenological asynchrony, with potential consequences for survival and population health. In years with increased spring temperatures, the timing of passerine chick rearing and of caterpillar activity may shift earlier or later in the year. Differences in the magnitude and/or direction of phenological shifts among passerines and …

Understanding Bird Diversity: A Modeling Approach In An Urban And Wetland Ecosystem, Clay Bliznick

Murray State Theses and Dissertations

The global increase in anthropogenically-driven shifts of land cover has resulted in losses to many natural communities such as prairies and wetlands. These ecosystems take on artificially-derived characteristics such as croplands, buildings, and roads to the extent that they no longer resemble the areas they once were. This process often results in the loss of biodiversity, ecological integrity, and valuable ecosystem services in these environments. Attempts to restore the condition and function of these disturbed areas are often implemented, but due to the complexity of factors driving these restorations, there is often a lack of practical insight needed to optimize …

Characterizing The Transient Emission Of Particles And Gases From A Single Puff Of Electronic Cigarette Smoke, Kashala Fabrice Kapiamba, Steven Achterberg, Ta Chun Lin, Philip D. Whitefield, Yue-Wern Huang, Yang Wang

Chemistry Faculty Research & Creative Works

This study employed high-time-resolution systems to examine the transient properties of aerosols and gases emitted from electronic cigarette (EC) puffs. Using a fast aerosol sizer, we measured particle size distributions (PSDs) across various EC brands (JUUL, VUSE, VOOPOO), revealing sizes ranging from 5 to 1000 nm at concentrations of 107 to 1010 cm-3. Most aerosols were found to be in the ultrafine range (below 100 nm), with JUUL-, VUSE-, and VOOPOO-producing aerosols with geometric mean sizes of 19.9, 47.3, and 29.4 nm, respectively. Applying the International Commission on Radiological Protection (ICRP) deposition model and assuming no further evolution of aerosols …

Pla-Based Bone Tissue Engineering Scaffolds Incorporating Hydroxyapatite And Bioactive Glass Using Digital Light Processing, Engin Gepek, Fateme Fayyazbakhsh, Lev Suliandziga, Vadym Mochalin, Osman Iyibilgin, Yue-Wern Huang, Ming C. Leu

Chemistry Faculty Research & Creative Works

Bone tissue engineering (BTE) aims to repair bone defects using biocompatible materials with tailored geometries and pore structures, providing appropriate mechanical support and control over biodegradation kinetics to promote bone growth. In this study, we utilized digital light processing (DLP) 3D printing to fabricate scaffolds with varying pore sizes using polymer–ceramic slurries composed of polylactic acid (PLA) as the main polymer matrix, incorporated with hydroxyapatite (HA) and bioactive borate glass (BBG) at various ratios. We studied the effect of composition on rheological behavior, printability, mechanical properties, bioactivity, degradation rate, and biocompatibility. While HA increased viscosity and reduced printing accuracy, it …

Patterns Of Kinship And Sociality In North American River Otters, Whitney E. Vickers

Cal Poly Humboldt theses and projects

Previous studies of river otters (Lontra canadensis) in coastal Humboldt County, California have documented varying social group compositions over the last four decades. It has been assumed that otters travel between coastal wetland sites, but the extent of movement has been unknown. Socially, river otters have been observed alone, in small family groups that consisted of an otter mom and pup(s), in larger helper groups that consisted of an otter mom, pup(s), and at least one additional adult or juvenile (helpers), and in all-adult social groups. Until now it was unknown whether the composition of social groups was …

Variation In The Timing And Duration Of Rough-Skinned Newt (Taricha Granulosa) Larval Period In The Center Of Their Geographic Range (Humboldt County, California), Emmery R. Parker

Cal Poly Humboldt theses and projects

Rough-skinned newts (Taricha granulosa) occur along the Pacific coast of the U.S. from central California to southwestern Alaska at elevations from zero to 2,800 m. Across that range, the timing and duration of various life history events (i.e., hatching, metamorphosis, breeding, and oviposition) are largely unknown, although general trends have been observed in a few locales. Larval life stages are particularly important for determining amphibian population persistence, but there have been no formal studies describing the larval period of rough-skinned newts. Using minnow-trap and dip net surveys at nine lentic sites in northern Humboldt County, California (elevations 400 …

Environmental Pollutants: A Risk For Premature Aging And Transgenerational Toxicity, Alex Kathleen Daniels

Masters Theses

"This thesis aims to identify interactions between C. elegans’ reproductive system and global pollutants such as microplastics, HgCl₂, nicotine, and pesticides. Human exposure to these pollutants and their effect on reproduction can be analyzed using the C. elegans as a model organism. Systematic analysis of matricidal hatching, progeny production, germline apoptosis, and lifespan assays determined effects on reproduction and reproductive aging. Through my experiments, it was determined that no significant effects were produced from the selected polystyrene, polyethylene, vape juice, nicotine hemi sulfate salt, imidacloprid, or glyphosate regarding matricidal hatching or progeny production. I confirmed that HgCl₂ induced significant effects …

Ai-Infused Discussion Boards: Enhancing Engagement, Reflection, And Academic Integrity In Anatomy And Physiology Education, Wade Dauberman

Teaching Repository of AI-Infused Learning

This paper presents the design, implementation, and evaluation of an AI-infused discussion board assignment that promotes ethical AI engagement, enhances student learning in anatomy and physiology, and addresses academic integrity concerns in higher education.

Salinity Effects On Cu(Ii) Bioremediation By Chlamydomonas Reinhardtii Microalgae, Jennifer Hughes

Honors Undergraduate Theses

Microalgae offer a sustainable approach to wastewater treatment by removing pollutants such as excess nutrients, CO₂, and heavy metals. Among various species, Chlamydomonas reinhardtii shows strong potential in removing Cu(II) ions from wastewater. In addition, salinity stress in C. reinhardtii has been linked to morphological and metabolic changes that enhance lipid and phytochemical production. While salinity stress has been studied for enhancing biofuel production, its impact on microalgal removal of heavy metals, particularly Cu(II), remains largely unexplored. Understanding how varying salinity conditions affect both algal growth and the efficiency of Cu(II) remediation could provide critical insights for improving integrated wastewater …

Parasite Communities Of Bluntnose Minnow (Pimephales Notatus) From Several Creeks In East Central Illinois, Md Rowshan Alam

Masters Theses

Parasites of freshwater fish play a vital functional role in aquatic ecosystems, but the spatial and ecological determinants of their prevalence and characteristics are still poorly understood. The current study quantified the diversity, prevalence, and environmental determinants of whole parasite burdens in bluntnose minnows across multiple creeks in central Illinois. Fish sampling and the collection of stream habitat data were conducted during the summers of 2023 and 2024. Fish were examined for parasites using necropsy and histology. A total of 20,817 parasites, predominantly trematodes (Posthodiplostomum spp.), cestodes (Proteocephalus spp), and protozoans, were identified. The most prevalent and abundant …

Assessing The Role Of Daily Thermal Fluctuations In The Performance Of Mitochondrial Energy Transduction Of The Centrarchid, Lepomis Cyanellus, Grayson Hofmann

Masters Theses

Freshwater systems are affected by current climate extremes, forcing species found in these systems to withstand drastic changes in temperature. Temperature changes affect these organisms by altering their metabolic rate and energy balance. Increases in temperature can lead to an increase in oxygen consumption, which ultimately increases the need for more energy production. Mitochondrial energy transduction of green sunfish (Lepomis cyanellus) and many other fish species after a thermal insult, has hardly been explored. This study complements the limited research available on mitochondrial function in similar species, as they ignore the possibility of consecutive thermal events, which are …

Chromatin Remodeling Protein Bptf Mediates Chromatin Accessibility At Gene Promoters In Planarian Stem Cells, Prince Verma, John M. Allen, Alejandro Sánchez Alvarado, Elizabeth M. Duncan

Biology Faculty Publications

Background The regulation of chromatin accessibility is essential in eukaryotic cells as one of several mechanisms that ensure gene activation occurs at appropriate times and in appropriate cell types. Accordingly, mutations in chromatin remodeling proteins are linked to many different developmental disorders and cancers. One example of a chromatin protein that has been linked to both developmental abnormalities and cancer is BPTF/NURF301, the largest subunit of the Nucleosome Remodeling Factor (NuRF) complex. The BPTF subunit is not only important for the formation of NuRF but also helps direct its activity to particular regions of chromatin by preferentially binding histone H3 …

Spatial Analysis Of American Chestnut (Castanea Dentata) Distribution And Ecology In Kentucky’S Federal Lands, Jacob Raymond Pease

Murray State Theses and Dissertations

Anthropogenic factors have been the cause of the decline of tree species across the globe. From unsustainable logging and development to disease and improper management, threats to forests have taken their toll. The American chestnut (Castanea dentata) was once an integral basal tree species in Appalachian forests, but chestnut blight drove the species to functional extinction by the mid-1900s. The recent creation of genetically modified chestnuts gives hope for future restoration of the species throughout its historical range. Despite blight resistance, effective restoration will require optimal site selection for finding and planting chestnuts, which will maximize limited resources. …