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Senescent Cancer-Associated Fibroblasts Mediate Immunosuppression And Promote Breast Cancer Progression, Jiayu Ye

Arts & Sciences Graduate Student Theses and Dissertations

Breast cancer is the most frequently diagnosed cancer among women worldwide, and aging is the largest risk factor for breast cancer development. The process of aging is typically accompanied by a progressive accumulation of senescent cells, which are characterized by a series of markers such as p16INKA4 (p16) positivity and a distinctive profile of secretory factors including mitogens, cytokines, and extracellular matrix (ECM) proteins that are collectively recognized as senescence-associated secretory phenotype (SASP). Numerous data so far have shown that senescent stromal cells play critical roles in modulating tumor microenvironment and progression. For example, senescent fibroblasts induced in vitro could …

Models And Mechanisms Of Chemotherapy-Induced Side Effects, Junwei Du

McKelvey School of Engineering Graduate Student Theses & Dissertations

Cancer is among the leading causes of death worldwide. Chemotherapy remains a cornerstone in the treatment of various cancers; however, it often leads to a range of debilitating side effects that compromise its efficacy and profoundly impact patients' quality of life and psychosocial well-being. These side effects can be broadly categorized into short-term effects, such as nausea, vomiting, fatigue, hair loss, and neutropenia, and long-term effects which can persist months or even years after treatment, including peripheral neuropathies, cognitive impairment, cardiotoxicity, nephrotoxicity and ototoxicity. Among the most common and dose-limiting side effects are chemotherapy-induced peripheral neuropathy (CIPN) and cardiotoxicity (CTX). …

Early Detection Of Colon Cancer Through Colonoscopy: Analysis Of Tumor Size And Resection Length, Alyssa Haddock

Honors Theses

Colon cancer remains a leading cause of cancer-related deaths in the United States, with early detection critical for improved outcomes. Colonoscopy is a primary screening tool that can reduce incidence rates through the identification and removal of precancerous polyps. This study examines how undergoing a colonoscopy prior to diagnosis impacts two key surgical outcomes: tumor size and colon resection length. Data were collected from 70 de-identified patients who underwent colon resection for colon cancer between 2019 and 2024 at two regional hospitals in East Texas: Hunt Regional Medical Center and Mother Christus Frances Hospital. Using pathology reports, tumor size and …

Perfectionism, Anxiety, And Depression: A Comparison Of Student Mental Health At East Texas A&M University: Honors Vs Non-Honors, Connor Hall

Honors Theses

Honors students at East Texas A&M University (ETAMU) may have higher expectations to succeed due to greater course load and pressure versus students who are not in the honors program. These expectations can lead to stress that may cause perfectionism, anxiety, or depression (Rice, 2006; Wan, 2022; Van Praag, 2004). This study sought to determine if higher expectations and course load could lead to differences in mental health in honors versus non-honors students at East Texas A&M University. In order to determine these mental health characteristics, data was gathered using responses to a Qualtrics survey sent to 7527 ETAMU undergraduate …

The Effects Of Diverse Bitter Gourds On Newly Formed Mcf-7/G1p3 And Mcf-7/Vector Cancer Cells, Eder Colmenero

Honors Theses

Breast cancer has become one of the deadliest cancers to affect women worldwide. Although treatments have been developed, no cure has been found for this disease. An emerging field with cancer treatments shows how isoflavones can be critical to limiting hormone-related cancers. In this study, the effects of Momordica charantia (bitter gourd) extracts will be investigated in two separate cell lines. These cell lines include MCF-7 and G1P3 with the G1P3 cell line being the more aggressive cancer. Bitter gourd, which is mainly harvested in Asia, has been shown to display apoptotic features when contracting cancer. Although it is unknown …

The Effects Of Maclura Pomifera On Mcf-7/Vector And Mcf-7/G1p3 Breast Cancer Cells, Khushi Bhatt

Honors Theses

Breast cancer is considered one of the most common types of cancer, mainly affecting women worldwide. The most aggressive type is Triple-negative breast cancer, which accounts for approximately 10-15% of the total amount of breast cancer cases. The majority of breast cancer cases are regarded as estrogen receptor-positive, accounting for 70% of the total number. Current treatment options consist of immunotherapy, surgery, endocrine therapy, and chemotherapy. Research in breast cancer treatment has been a topic of interest in recent years, as the rate of individuals becoming diagnosed is increasing. The Osage orange, or Maclura pomifera, is a fruit native to …

Neotropical Catfish Diversity In Rivers Of The Guiana Shield: A Combined Approach Using Taxonomic, Functional, And Isotopic Tools, Joseph Sheffield

Undergraduate Research Conference

Rivers of the Guiana Shield in South America are very heterogenous, containing a mosaic of habitats and environmental characteristics ideal for maintaining high freshwater biodiversity. The connection between the Essequibo and Amazon rivers via the Rupununi River during the wet season plays an important role for the great diversity of Neotropical ichthyofauna. Neotropical catfishes (Siluriformes) are the second most diverse group of freshwater fishes, after the Characiformes. They span a wide range of body sizes and exhibit diverse trophic specializations, making them ideal organisms for studying the influence of body size variation on community organization and ecosystem function. We explored …

Antimicrobial Resistance (Amr) Emergence In Sewage Wastewater: An Investigation Based On Advanced Genomics Methods, Shahana Seher Malik

Thesis/ Dissertation Defenses

Antimicrobial resistance (AMR) is a global health worry, which makes the treatment of infectious diseases difficult by compromising the effectiveness of antimicrobial medications. This issue got worsen by the use of antibiotics without proper prescription and care during the time of COVID-19. At that time more than 78% of patients were prescribed with the use of medications like azithromycin and cephalosporins. The urban wastewater systems like wastewater treatment plants (WWTPs), hospital effluents, and residential wastewater were found to be bursting with antibiotic-resistant bacteria (ARB) and resistance genes (ARGs). This research used advanced metagenomics and LC-MS/MS techniques for the examination of …

Effects Of Chronic Metal Exposure And Metamorphosis On The Microbiomes Of Larval And Adult Insects And Riparian Spiders Through The Aquatic-Riparian Food Web, Brittany G. Perrotta, Karen A. Kidd, Amy Marcarelli, Gordon Paterson, David M. Walters

Michigan Tech Publications

The macroinvertebrate microbiome controls various aspects of the host's physiology, from regulation of environmental contaminants to reproductive output. Aquatic insects provide critical nutritional subsidies linking aquatic and riparian food webs while simultaneously serving as a contaminant pathway for riparian insectivores in polluted ecosystems. Previous studies have characterized the transport and transfer of contaminants from aquatic to riparian ecosystems through insect metamorphosis, but both contaminant exposure and metamorphosis are energetically intensive processes that may cause host microbiomes to undergo radical transformation in structure and function, potentially affecting the host's physiology. We collected arthropods from three sites within Torch Lake, a historical …

Life After Death: Investigating The Resistance And Recovery Of Fungal Communities To Foundation Tree Mortality, Jessie F. Marlenee

Biology ETDs

Tree mortality can have cascading effects on the composition and resilience of interacting fungal communities. Yet, little is known about the impact tree mortality, distinct from abiotic drivers (i.e., drought), has on these communities. This dissertation focuses on the resilience of fungal communities to experimental tree mortality in a piñon-juniper woodland. In chapter one, I found that piñon mortality reduced piñon fine root biomass and piñon mycorrhizal fungal diversity, whereas juniper mycorrhizal fungi were unaffected by juniper mortality. In chapter two, I revealed that piñon mortality altered the composition and spatial structure of mycorrhizal and saprotrophic fungi in the soil, …

Missense Mutation Of Msh6 Leucine 696 Has No Apparent Effect On The Dna Mismatch Repair Process, Razan H. Hammad, Rafia Rashid, Essence Tarrence, Christopher Bolden, Joanna E. Haye-Bertolozzi

XULAneXUS

Lynch Syndrome and Constitutional Mismatch Repair Deficiency are human diseases implicated in mutations of DNA mismatch repair (MMR) genes. This experiment tested a mutation of an MMR gene, MSH6, and evaluated how the mutation affected overall MMR effectiveness. Using the yeast Saccharomyces cerevisiae, we performed the CAN1 forward mutation assay to study msh6-L696F and its implications in the MMR process. We hypothesized that there would be a significant change in molecular function in the Msh6 protein in the presence of this mutation. Bioinformatic tools predicted that this amino acid change would have deleterious effects on MMR function. However, …

From Microplastic Impacts To Biodegradation Solutions: Investigating Microplastic Contamination, Microbial Responses, And Efficacy Of Synthetic Microbial Consortia In Plastic Degradation, Rener Sahot De Jesus

Thesis/ Dissertation Defenses

Plastics, including microplastics, pose significant environmental threats due to their widespread presence and harmful ecological effects. This dissertation present three distinct, yet interconnected studies. First, a study on microplastic contamination in urban recreational parks was conducted in Al Ain, UAE. Results showed that low-density microplastics were present in 87% of soil samples, with FTIR analysis identifying synthetic polymers such as PE and PP. Additionally, these microplastics were found to negatively affect soil pH and moisture levels, emphasizing the need for enhanced monitoring and management strategies. Second, the effects of ground microplastics on Photobacterium leiognathi spp., a marine luminous bacterium, were …

Biology Department Publications: 2024, Sam Lindgren

Biology Department Bibliographies

This document is a non-comprehensive list of publications made by graduate students, post-doctoral researchers, and faculty members in the Biology Department in 2024. It indexes those publications available through PubMed, and serves as an archival record of the Department's robust scholarly contributions.

The Impact Of Paternal Obesity On Placental Development And Function During Pregnancy, Delaney G. Wolfe, Delaney G. Wiolfe

Department of Nutrition Student Projects

Paternal obesity is a rising concern in conception and reproductive health, with increasing evidence suggesting its impact on pregnancy outcomes. While maternal obesity's effects on fetal development and placental function are well-documented, the role of paternal obesity remains less understood. The placenta, crucial for nutrient exchange and fetal development, can be disrupted by inflammation, oxidative stress, and epigenetic modifications, potentially leading to long-term health implications for both maternal and fetal health. Understanding the paternal influence on placental development is essential for improving pregnancy outcomes and offspring
health. This study aims to investigate the relationship between paternal obesity on placental function …

The Role Of Urbanization And Corticosterone In Auditory Sensory Processing In House Sparrows (Passer Domesticus), Brooke Fox, Ashley Lauraine, Hannah Peterson

24th Annual A. Paul and Carol C. Schaap Celebration of Undergraduate Research and Creative Activity (2025)

Urban habitat expansion will introduce new anthropogenic challenges for wildlife populations, including habitat fragmentation, novel predators, and pollution. These challenges may hinder animal communication and contribute to increased stress levels. This study will investigate the physiological consequences of stressors on the house sparrow (Passer domesticus). Specifically, we will examine how urbanization affects stress hormone (i.e., corticosterone, CORT) levels and its relationship to auditory processing. It is predicted that urbanization may impose novel stressors on animals, leading to differences in this hormone across urban and rural birds. We seek to understand if differences in CORT levels could impact animals' …

Foraging Efficiency Of Rural And Urban House Sparrows, Passer Domesticus, Among Natural And Unnatural Obstacles, Annie Waldron, Katie Kowalyk, Mara Gutierrez

24th Annual A. Paul and Carol C. Schaap Celebration of Undergraduate Research and Creative Activity (2025)

Urbanization may lead to food displacement for many animals. Urban birds are exposed to man-made objects that can result in variable food locations, unlike rural birds who inhabit areas where food locations are typically consistent. The introduction of unnatural obstacles may affect a sparrow's ability to find and reach food sources. Scientific studies have yet to find a significant increase in problem-solving skills related to foraging in urban versus rural birds. Our research seeks to determine the foraging efficiency of rural and urban house sparrows when exposed to obstructed food sources. Novel objects near a food source may scare birds …

Interactions Among Nutrients Govern The Global Grassland Biomass–Precipitation Relationship, Philip A. Fay, Laureano A. Gherardi, Laura Yahdjian, Peter B. Adler, Jonathan D. Bakker, Siddharth Bharath, Elizabeth T. Borer, W. Stanley Harpole, Erika Hersch-Green, George R. Wheeler

Michigan Tech Publications

Ecosystems are experiencing changing global patterns of mean annual precipitation (MAP) and enrichment with multiple nutrients that potentially colimit plant biomass production. In grasslands, mean aboveground plant biomass is closely related to MAP, but how this relationship changes after enrichment with multiple nutrients remains unclear. We hypothesized the global biomass–MAP relationship becomes steeper with an increasing number of added nutrients, with increases in steepness corresponding to the form of interaction among added nutrients and with increased mediation by changes in plant community diversity. We measured aboveground plant biomass production and species diversity in 71 grasslands on six continents representing the …

Analysis Of Psychoactive Compounds In The Web-Building Behavior Of Mangora Maculata, Diane R. Castner

Undergraduate Honors Thesis Projects

The arachnid central nervous system (CNS) functions in an analogous way to the human CNS, despite spiders not having a central brain. Previous studies on spider behavior and web formation have investigated the impacts of stimulants, depressants, sedatives, and hallucinogens, but the impacts of serotonin reuptake inhibitors (SSRIs), such as fluoxetine are unknown. This study examined the impacts of caffeine, nicotine, ethanol, and fluoxetine on the web building behavior of Mangora maculata. Webs were characterized by 9 metrics: web entirety, size of web, radial angles, cell length, number of large holes, frequency of forking of spiral threads, radial angle consistency, …

Characterization Of Long-Noncoding Rnas In Prostate And Pancreatic Cancer Through Single Cell Transcriptomics, Debanjan Saha

Arts & Sciences Graduate Student Theses and Dissertations

Metastatic castration resistant prostate cancer (mCRPC) is a subtype of prostate cancer that develops after metastasis and resistance to hormone therapy, thereby carrying a poor prognosis. Likewise, pancreatic ductal adenocarcinoma (PDAC) is one of the most lethal malignancies due to its propensity to present at advanced, unresectable stages in patients. Recent genomic studies have identified molecular features of mCRPC and PDAC, such as the existence of mutations in key driver genes, the extensive transcriptomic intra-tumoral heterogeneity, the role of regulatory elements in dictating driver gene expression, mechanisms of treatment resistance, and the interactions with the immunosuppressive and stromal tumor- microenvironment …

Impacts Of Riverine Heatwaves On Rates Of Ecosystem Metabolism In The United States, Spencer J. Tassone, Michelle Kelly, Olivia N. Beidler, Michael L. Pace, Amy Marcarelli

Michigan Tech Publications

Rivers produce and decompose large amounts of carbon globally due, in part, to high rates of gross primary production (GPP) and ecosystem respiration (ER), collectively known as ecosystem metabolism. Water temperature is a major driver of ecosystem metabolism, and in-stream temperatures are increasing globally, including extreme temperature events called heatwaves. This study used published estimates of daily GPP and ER from 48 stream and river locations in the United States to examine how ecosystem metabolism responds to riverine heatwaves. During low-severity heatwaves, GPP and ER increase proportionally, resulting in no net difference. However, during severe and extreme heatwaves, GPP declined …

Determination Of The Effects Of Biogenic Metal Nanoparticles Concentrations On Soil Properties, Vicia Faba Growth And The Toxicity On Black Aphid, Ayoub Sabir Karim, Halala Rahman Qadr, Sakar Abdulqadr Saeed, Nashmeel Saeed Khudhur

Karbala International Journal of Modern Science

The development of nanomaterials could support more extensive agricultural uses, including nano-pesticides. Current study was conducted to observe the effects of different concentrations (25, 50, 75, 100, 150 and 200 ppm) of biosynthesized zinc oxide nanoparticles (ZnO NPs) and aluminum oxide nanoparticles (Al₂O₃ NPs) on soil, faba bean and toxicity on black aphid (Aphis fabae). The synthesized ZnO NPs from Musa paradisiaca L. characterized by ultraviolet (UV)-visible spectroscopy, Fourier Transform Infrared Spectroscopy, X-ray diffraction and Transmission electron microscopy. Al₂O₃ NPs was prepared by calcination of Iraqi kaolin via evaporation process. Highest pH …

Ethical Concerns And Implications Of Expanded Carrier Screening, Emily Andres

Student Research Symposium

The rapid evolution in the field of genetics is often met with uncertainty and skepticism. With the advancements in genetic technologies, expanded carrier screening (ECS) has emerged as a powerful tool in reproductive medicine. While ECS provides prospective parents with insight into their genetic risk, it also raises serious ethical questions for many.

Investigation Of Immune/Performance Trade-Offs In Neonate Children's Pythons, Ellie Hartman

Student Research Symposium

Introduction

Energetic trade-offs are a key consideration when understanding an organism’s life history. One of these tradeoffs occurs between investment in immunity and performance.

• Individuals that invest more energy into immunity may be less equipped to avoid predation or find food, while those prioritizing performance may be more susceptible to infection
• Hypothesis: In response to a novel antigen, neonate snakes will have an immune response we can measure by counting immune cells. Additionally, we predict that strike frequency, swim speed, and endurance will be reduced in snakes undergoing an immune response and that with greater immune response we will see …

Evaluating The Stress System Of The Grieving Brain: Corticotropin-Releasing Factors And Partner Loss In Coyotes, Rachel Tong

Student Research Symposium

Introduction

Social bonds are fundamental and essential

• Positive and negative effects

The stress system¹ :

• Corticotropin-releasing factor (CRF) system
• CRFR1 and CRFR2
• Acts on the HPA axis, amygdala, and hippocampus

Genetic monogamy is common among coyotes

Importance:

• Coyotes’ greatest threat are humans
• An abandoned partner can disrupt biology and behavior

Animals experience social loss too!

Phylogeny And Historical Biogeography Of Uroleucon Aphids, Audrey Mullen

Student Research Symposium

Research Questions

• Are South American Uroleucon aphids endemic or recently introduced?

• If endemic, did the aphids come from North America or Eurasia?

• When did dispersal events occur?

• Did temperate zone-adapted Uroleucon aphids cross through equatorial tropical forest?

Optimizing Antibiotics: The Ph Factor, Tyler Barry, Camila Campos, Claire England, Carson Porter

Student Research Symposium

Antibiotic-resistant bacteria are a global concern. Antibiotic production depends on factors like pH and salinity. Antibiotics are waiting to be discovered in soil that can aid with health treatments [1]. We isolated colonies from soil. One isolate produced antibiotics, forming an inhibition zone against Staph. epidermidis. Our soil had a pH of 8, suggesting it's an alkaliphile that can thrive in basic conditions. Optimal pH enhances antibiotic production, benefiting medicine [3].

Wiped Out?: Testing Peribacillus Frigoritolerans Against Hospital Disinfection Techniques, Alexis Lupus, Ashtyn Whatcott, Asaria Zizumbo, Cade Neuberger

Student Research Symposium

Introduction

Hospital disinfection is essential to patient health, as harmful bacteria can compromise patient health. Factors like pathogen type and cleaning frequency influence disinfection efficacy. Sani-Cloth® disinfectant wipes are widely used in healthcare settings and have shown high effectiveness, particularly on surfaces such as iPad screens. The Sani-Cloth® disinfectant wipes tested in this experiment protect against gram-negative and gram-positive bacteria .This experiment evaluates three types of Sani-Cloth® wipes against Peribacillus frigoritolerans, a gram-positive soil bacterium. Given the range of microbes introduced in hospital environments, especially in high-traffic areas like emergency departments, identifying the most effective wipes helps ensure optimal infection …

Implications Of Positive Nitrogen Fixation Capabilities Of Peribacillus, Weston Farley, Ariana Long

Student Research Symposium

Recent studies highlight the versatile role of Peribacillus simplex in sustainable agriculture. This bacterium has been shown to alleviate saline and alkaline stress in maize, promoting plant growth and improving crop yield under challenging conditions and enhance agricultural sustainability by supporting soil health and reducing the need for chemical fertilizers. Its role in fixing nitrogen and improving plant health makes it an essential player in eco- friendly farming practices.. Other species of Peribacillus have been shown to fix nitrogen, suggesting that our sample bacteria may also have these same capabilities.

• Our goal in this research is to determine whether …

Evaluating Exoelectrogenic Potential Through Hydrogen Production, Alec Merryweather, Jaxon Schenk, Hannah Castillo, Madison Weiers

Student Research Symposium

This research project investigates the electrical output of local exoelectrogenic bacteria to develop sustainable energy sources. By identifying and optimizing these bacteria, the aim is to advance microbial electrochemical cells. The experiment involved collecting and culturing local bacteria, then measuring their hydrogen production through the use of an H2Blue test. Successful outcomes could lead it to become an eco-friendly energy solution.

Disjunction In Arachnospila (Pompilidae: Hymenoptera): Convergent Evolution Or Recent Dispersal?, Bridger Jorgensen, Steven Madsen

Student Research Symposium

Convergent evolution is defined as unrelated species evolving similar traits. A disjunct distribution is the appearance of species or groups of species in disconnected geographical areas. Is the disjunction we see in Arachnospila due to a recent disjunct distribution/long distance dispersal event or long-term convergent evolution?