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Nitrogen Addition Additively Boosts Climate-Driven Salsola Tragus (Russian Thistle) Invasion Into Southwestern Usa Grasslands, Melissa A. Bacigalupa
Nitrogen Addition Additively Boosts Climate-Driven Salsola Tragus (Russian Thistle) Invasion Into Southwestern Usa Grasslands, Melissa A. Bacigalupa
Biology ETDs
Effective management of invasive, non-native plants requires understanding key drivers of invasion, including nitrogen enrichment from atmospheric deposition and agriculture. Long-term studies are essential for capturing complex invasion dynamics yet remain uncommon. We used 22 years of observations and 14 years of nitrogen experiments to examine invasion by Salsola tragus (Russian thistle) into three semi-arid grasslands of central New Mexico. Invasion patterns varied, with rapid expansion in Chihuahuan Desert grassland and the Desert-Plains ecotone but stability in Plains grassland. Under ambient nitrogen, precipitation most strongly correlated with Russian thistle biomass and high native grass biomass was associated with Russian thistle …
Table Of Contents
Journal of the South Carolina Academy of Science
No abstract provided.
Effects Of Perfluorooctanoic Acid (Pfoa) And Elevated Salinity On Growth, Reproduction, And Movement Of Physa Acuta, Juana Baudrix, Andrea Rizzo, Samuel Richardson, Jason Doll, Daniel Elias
Effects Of Perfluorooctanoic Acid (Pfoa) And Elevated Salinity On Growth, Reproduction, And Movement Of Physa Acuta, Juana Baudrix, Andrea Rizzo, Samuel Richardson, Jason Doll, Daniel Elias
Journal of the South Carolina Academy of Science
Freshwater ecosystems face increasing threats from pollutants such as perfluorooctanoic acid (PFOA) and elevated salinity. This study examined the effects of PFOA (1.69 µg/L) and elevated salinity (2.5 g/L) on Physa acuta growth, reproduction, and movement over a 21-day exposure. Movement increased across treatments, and reproductive output also increased with salinity and salinity + PFOA, with increased egg sac production in the combined treatment (p < 0.05), while PFOA alone reduced total egg production. Growth was higher with PFOA but decreased in the salinity and salinity + PFOA treatments. Our results suggest that P. acuta increases reproductive output when exposed to combined stressors, prioritizing egg sac production at the cost of movement and growth. These trade-offs may influence P. acuta population dynamics and freshwater ecosystem processes. While this study provides insights into the effects of PFOA and salinity, further research is necessary to understand the long-term ecological consequences in field conditions.
Characterization Of The Role Of Rsd-6, A Tudor Domain Protein, In Antiviral Rnai Pathway In Caenorhabditis Elegans, Krishna Prasad Dahal
Characterization Of The Role Of Rsd-6, A Tudor Domain Protein, In Antiviral Rnai Pathway In Caenorhabditis Elegans, Krishna Prasad Dahal
LSU Doctoral Dissertations
RNA interference (RNAi) triggered by virus produced dsRNA intermediate offers robust innate immunity against invading viruses in plants, insects and animals. Caenorhabditis elegans has been extensively used as a model organism to study host virus interaction. Recently, a forward genetic screen identified RNAi spreading deficient-6 (RSD-6), a Tudor domain protein, as a key component in antiviral RNAi pathway against Orsay virus in C. elegans but its contribution in the pathway remained unclear. Here, we generated a rsd-6 null allele using CRISPR-Cas9 genome editing, crossed it with other known RNAi mutants and analyzed Orsay virus replication in them and in combination …
Selenium Nanoparticles Synthesized By Pulsed Laser Ablation In Liquids For Antimicrobial Applications, Tina Hesabizadeh
Selenium Nanoparticles Synthesized By Pulsed Laser Ablation In Liquids For Antimicrobial Applications, Tina Hesabizadeh
Theses and Dissertations
This study aimed to synthesize selenium nanoparticles (Se NPs) by Pulsed Laser Ablation in Liquids (PLAL) and investigate their antibacterial and biological effects, particularly their impact on cell viability and related biological responses. Spherical amorphous Se NPs were produced by irradiating a selenium target using a combination of bottom- and top-ablation protocols. After autoclaving, the amorphous Se NPs were converted into trigonal Se NPs. Se NPs were characterized by using Scanning Electron Microscopy (SEM), Transmission Electron Microscopy (TEM), and Fourier Transform Infrared Spectroscopy (FTIR). The biological effects of Se NPs were quantitatively assessed through evaluations of cell viability and associated …
Effects Of Mating System And Adaptedness On The Evolution Of Fitness And Mtdna Copy Number In Mitonuclear Mismatched C. Elegans, Zachary P. Dietz, Devshuvam Banerji, Jennifer A. Sullins, Brent W. Bever, Stephen F. Christy, Ulfar Bergthorsson, Vaishali Katju, Suzanne Estes
Effects Of Mating System And Adaptedness On The Evolution Of Fitness And Mtdna Copy Number In Mitonuclear Mismatched C. Elegans, Zachary P. Dietz, Devshuvam Banerji, Jennifer A. Sullins, Brent W. Bever, Stephen F. Christy, Ulfar Bergthorsson, Vaishali Katju, Suzanne Estes
Biology Faculty Publications and Presentations
Metabolic functioning in nearly all eukaryotes relies on molecular machinery dual-encoded by mitochondrial DNA (mtDNA) and nuclear DNA (nDNA) genomes. The two genomes have sustained an extraordinary degree of cooperation across evolutionary time, preserving the capacity for indispensable processes including oxidative phosphorylation and ATP production, which in turn influence many fitness-related traits. How this cooperation is maintained when one member of the pair is debilitated by deleterious mutation is poorly understood, as is the influence of mutation location (mtDNA or nDNA), mating system, or the potentially compensatory effects of mtDNA copy number changes on the process. We asked whether and …
Transformation With Genes To Improve Lipid Production And Barcoding To Identify Unknown Algal Species, Michelle T. Rada
Transformation With Genes To Improve Lipid Production And Barcoding To Identify Unknown Algal Species, Michelle T. Rada
Theses and Dissertations
With the rising demand for alternative fuels, algal-based biofuels are a promising, sustainable source that meets commercial interest while producing lower greenhouse gas emissions compared to fossil fuels. This thesis explored two studies, evaluating microalgae for their future potential in lipid yield for biofuel production.
The first study involved developing a cost-efficient electroporation protocol that allowed for the genetic transformation of Chlamydomonas reinhardtii using the pChlamy_4 vector, which supports future cloning of genes to enhance lipid production. Parameters affecting DNA uptake and integration into algal genomes were studied: the effect of cell density, the settings of the electroporation device, and …
Reframing Sleep Diagnostics: A Structured Clinical Guide To Polysomnography Evaluation, Elvie Zulka Kautzia Rachmawati, Mikhael Yosia
Reframing Sleep Diagnostics: A Structured Clinical Guide To Polysomnography Evaluation, Elvie Zulka Kautzia Rachmawati, Mikhael Yosia
AUIQ Complementary Biological System
Polysomnography (PSG) remains the gold standard for evaluating sleep-disordered breathing (SDB) and related conditions, yet its clinical potential is often limited by overreliance on the apnea-hypopnea index (AHI) and similar summary metrics. This narrative review offers a structured, physiology-informed approach to PSG interpretation that integrates sleep architecture, arousal burden, respiratory event morphology, oxygenation patterns, and CO2 trends. Recognizing phenotypic patterns-such as REM-related and positional OSA-through sleep stage and positional stratification is essential for directing targeted therapy. We outline common interpretive pitfalls, including automated scoring errors, overlooked signal artifacts, and the first night effect, emphasizing the need for careful manual …
Transformative Role Of Laser Technology In Ophthalmology And Dermatology: A Mini Review Of Precision Applications In Modern Medicine, Haider Hameed, Maryam Aqeel, Hussein Rafid, Rasha Sabah, Mustafa Fadhel, Zahraa Hameed, Muqtada Khalawi, Zahraa Sarmed, Ail Ahmed, Ayat Abd Albari, Lina M. Shaker
Transformative Role Of Laser Technology In Ophthalmology And Dermatology: A Mini Review Of Precision Applications In Modern Medicine, Haider Hameed, Maryam Aqeel, Hussein Rafid, Rasha Sabah, Mustafa Fadhel, Zahraa Hameed, Muqtada Khalawi, Zahraa Sarmed, Ail Ahmed, Ayat Abd Albari, Lina M. Shaker
AUIQ Complementary Biological System
Laser technology has significantly transformed healthcare and biological sciences by Laser devices are offered precision, efficiency, and Multiple simple solutions in various medical fields and research domains. In ophthalmology, lasers play a pivotal role in vision correction, retinal imaging, and therapeutic applications, such as femtosecond laser-assisted LASIK and two-photon fluorescence scanning laser ophthalmoscopy. Dermatology has also benefited from CO2, Nd:YAG, excimer, and Q-switched lasers, which are widely used for pigmentation disorders, tattoo removal, and skin rejuvenation. Moreover, Low-Level Laser Therapy (LLLT) enhances wound healing and tissue regeneration, while intense pulsed light (IPL) and diode lasers improve hair removal …
Dual Action Dynamics: Assessing Hypopharyngeal Cancer Cell Survival Using Combination Chemotherapy, Luke Nieman
Dual Action Dynamics: Assessing Hypopharyngeal Cancer Cell Survival Using Combination Chemotherapy, Luke Nieman
Biology Summer Fellows
Targeting glucose metabolism is an attractive strategy for cancer treatment, as cancer cells rely more heavily on glycolysis than oxidative phosphorylation, a phenomenon known as the Warburg Effect (Wang et al 2015). Reversing this metabolic reprogramming can impair cancer cell proliferation. NG52, a small-molecule inhibitor of PGK1, has been shown to effectively reverse the Warburg Effect and reduce cancer cell viability (Wycliffe et al. 2007). Paclitaxel, commonly Taxol, is a chemotherapeutic agent that disrupts mitotic spindle function, causing mitotic arrest and apoptosis (Markman et al 2005). In this study, we aimed to evaluate the individual and combined effects of NG52 …
Conflation Between Knowledge And Acceptance May Contribute To The Knowledge Gap Between Judeo-Christian And Non-Religious People, Jamie Jensen
ScholarsArchive Data
These data are from a nationwide study and a classroom intervention looking at participants' understanding of evolution (i.e., knowledge), and their acceptance of evolution.
Summary Of Taxonomy Changes Ratified By The International Committee On Taxonomy Of Viruses (Ictv) From The Bacterial Viruses Subcommittee, 2025, Dann Turner, Evelien M. Adriaenssens, Rudolf I. Amann, Pavol Bardy, Nina Bartlau, Jakub Barylski, Stanislaw Błażejak, Majid Bouzari, Ariane Briegel, Yves Briers, Daniel Carrillo, Xia Chen, Dennis Classen, Ryan Cook, Marco A. Crisci, Arnaud Dechesne, Paulina Deptula, Bas E. Dutith, Bert Ely, Lars Fieseler, Et. Al.
Summary Of Taxonomy Changes Ratified By The International Committee On Taxonomy Of Viruses (Ictv) From The Bacterial Viruses Subcommittee, 2025, Dann Turner, Evelien M. Adriaenssens, Rudolf I. Amann, Pavol Bardy, Nina Bartlau, Jakub Barylski, Stanislaw Błażejak, Majid Bouzari, Ariane Briegel, Yves Briers, Daniel Carrillo, Xia Chen, Dennis Classen, Ryan Cook, Marco A. Crisci, Arnaud Dechesne, Paulina Deptula, Bas E. Dutith, Bert Ely, Lars Fieseler, Et. Al.
Faculty Publications
This article summarises the activities of the International Committee on Taxonomy of Viruses Bacterial Viruses Subcommittee, detailing developments in the classification of bacterial viruses. We provide here an overview of all new, abolished, moved and renamed taxa proposed in 2024, approved by the Executive Committee, and ratified by membership vote in 2025. Through the collective efforts of 74 international contributors of taxonomy proposals in this round, 43 ratified proposals have led to the creation of one new phylum, one class, four orders, 33 families, 14 subfamilies, 194 genera and 995 species. These proposals mark significant progress in refining the taxonomy …
Twist And Snout: Head And Body Morphologies Determine Feeding Kinematics In Substrate-Biting Fishes, Tal Perevolotsky, Jacob M. Brotman-Krass, Yarden Ratner, Yael Avigad, Adam P. Summers, Cassandra M. Donatelli, Roi Holzman
Twist And Snout: Head And Body Morphologies Determine Feeding Kinematics In Substrate-Biting Fishes, Tal Perevolotsky, Jacob M. Brotman-Krass, Yarden Ratner, Yael Avigad, Adam P. Summers, Cassandra M. Donatelli, Roi Holzman
Engineering Faculty Articles and Research
Synopsis
Across teleosts, feeding by biting substrate-attached prey has evolved multiple times and is associated with convergent morphologies that include a deep body and an elongated, tapered head. However, the functional role of these morphologies in substrate-biting fish is not established. Here, we tested the hypothesis that these morphologies function as control surfaces that affect feeding kinematics during biting. To test this hypothesis, we used simplified physical models of substrate-biting reef fish and examined the role of head, body, and fin morphology in determining feeding kinematics that facilitate the removal of substrate-attached prey. Models simulated the swift lateral movement of …
Efficient Packaging Of Hiv-1 Genomes Via Recognition Of Its Adenosine-Rich Content By A Heterologous Rna-Binding Domain, Hung Ryan Vuong
Efficient Packaging Of Hiv-1 Genomes Via Recognition Of Its Adenosine-Rich Content By A Heterologous Rna-Binding Domain, Hung Ryan Vuong
Arts & Sciences Graduate Student Theses and Dissertations
RNA-protein interactions underlie many key processes in viral replication and antiviral immune responses. In this thesis, I reported our investigations on the roles of two RNA-binding proteins, Gag and IFIT1, in mediating HIV-1 genome packaging and regulating innate immune gene expression, respectively. The HIV-1 genome comprises a dimer of unspliced, positive sense mRNA (gRNA) that is packaged with high efficiency, with more than 90% of viral particles containing two copies of gRNA. Gag is the major HIV-1 structural protein that coordinates all steps of virion assembly and possesses a nucleocapsid domain (NC) required for gRNA binding and genome packaging. In …
Antibacterial Potential Of Tapanuli Orangutan (Pongo Tapanuliensis) Food In Batang Toru Forest Against Escherichia Coli And Salmonella Typhi, Herna Febrianty Sianipar, Wahyu Widoretno, Luchman Hakim, Rezi Rahmi Amolia, Fatchiyah Fatchiyah
Antibacterial Potential Of Tapanuli Orangutan (Pongo Tapanuliensis) Food In Batang Toru Forest Against Escherichia Coli And Salmonella Typhi, Herna Febrianty Sianipar, Wahyu Widoretno, Luchman Hakim, Rezi Rahmi Amolia, Fatchiyah Fatchiyah
Karbala International Journal of Modern Science
Diarrhea is a common disease affecting orangutans, primarily caused by Escherichia coli and Salmonella typhi bacteria. To treat this disease, antibacterial food sources are essential as therapeutic agents for orangutans. The fruits consumed by Tapanuli orangutans include Campnosperma auriculatum, Agathis borneensis, Artocarpus heterophyllus, Castanopsis argantea, and Aglaia tomentosa. This study aims to examine the amino acid and phytochemical components with potential antibacterial properties in these five fruit species and their inhibitory effects on E. coli and S. typhi growth through cell lysis, observed using a Scanning Electron Microscope (SEM). The samples were tested for amino acids, phytochemicals, vitamin C content, …
Utilizing The Combinatory Power Of Chemotherapeutic Compounds In Triple Negative Breast Cancer Cells, Matthew I. Hyder
Utilizing The Combinatory Power Of Chemotherapeutic Compounds In Triple Negative Breast Cancer Cells, Matthew I. Hyder
Biology Summer Fellows
Breast cancer is the leading cause of cancer-related deaths among women worldwide and the second most common cause of cancer deaths in women in the United States. Genetic variants that increase the risk of breast cancer include mutations in the breast cancer susceptibility genes 1 and 2 (BRCA1 and BRCA2). Apoptosis, or programmed cell death, is a natural process that helps the body remove aged cells. However, in cancer, deregulated apoptotic signaling—especially the activation of anti-apoptotic mechanisms—enables cancer cells to evade this process, leading to uncontrolled proliferation, tumor survival, therapeutic resistance, and cancer recurrence. Most anti-cancer drugs function as chemotherapeutic …
New Paradigms In E. Coli Hemolysin Function And Pathogenesis, Hunter Winston Kuhn
New Paradigms In E. Coli Hemolysin Function And Pathogenesis, Hunter Winston Kuhn
Arts & Sciences Graduate Student Theses and Dissertations
Bacterial pore-forming toxins are potent secreted protein effectors that disrupt cellular ion homeostasis by integrating into the plasma membrane. Among them, the RTX toxin alphahemolysin (HlyA) from uropathogenic Escherichia coli (UPEC) has been extensively studied for its hemolytic activity, broad cell tropism, and role in virulence. HlyA was identified as the first type 1 secreted substrate, with β2 integrin CD18/LFA-1 proposed as its receptor. However, its diverse mechanisms of cellular toxicity and impact on outcomes of urinary tract infection (UTI) have remained incompletely defined. During pyelonephritis, renal epithelial cells are at the front line of infection, directly contacting ascending UPEC …
Multiple Stressors Effects On The Physiological Performance Of Mytilus Trossulus, M. Christina Vasquez, Alana J. Borer, Claribel Y. Alcantar, Osiris Guinea Zepeda, Camya A. Brazil, Colin Carr, Emma Guerrini Romano, Alexander J. Provenzano, Min Jeon Roh
Multiple Stressors Effects On The Physiological Performance Of Mytilus Trossulus, M. Christina Vasquez, Alana J. Borer, Claribel Y. Alcantar, Osiris Guinea Zepeda, Camya A. Brazil, Colin Carr, Emma Guerrini Romano, Alexander J. Provenzano, Min Jeon Roh
Biology Faculty Works
Mytilus galloprovincialis and M. trossulus co-occur and hybridize along set biogeographical ranges of temperature and salinity along the Pacific coast, USA. However, the role of physiological traits in mussel distribution remains poorly understood. We investigated metabolic rate, antioxidant activity (superoxide dismutase, catalase), oxidative damage (malondialdehyde content, MDA), and clearance rate of M. trossulus under multiple stressors: 7 days of hyposalinity (20, 28, 34 ppt), followed by an acute heat shock (17, 20, 25 ◦C). We found a significant effect of temperature on metabolic rate, an interaction effect on antioxidant activity, and MDA, and independent temperature and salinity effects on clearance …
Effects Of Plasma-Activated Water On Wheat: Germination And Seedling Development, Wafaa Abdulrazzaq Abdullah, Hadeel O. Ismael, Duaa A. Uamran, Hammad R. Humud
Effects Of Plasma-Activated Water On Wheat: Germination And Seedling Development, Wafaa Abdulrazzaq Abdullah, Hadeel O. Ismael, Duaa A. Uamran, Hammad R. Humud
Karbala International Journal of Modern Science
The food sector must contend with issues such as pathogen resistance to some of the available chemical agents, environmental pollution, and climate change to provide healthy food for livestock and people. The application of atmospheric pressure plasma jets (APPJs) is one potential solution for such problems. Plasma is appropriate for effective surface decontamination regarding food products and seeds, surface decontamination, and achieving improved agricultural production yields. The impact of plasma-activated water (PAW) produced by plasma jet discharge (PJD) system on in vitro-cultivated wheat seeds is examined in this work. For this aim, a plasma jet system was constructed with a …
Spidr Enables Multiplexed Mapping Of Rna-Protein Interactions And Uncovers A Mechanism For Selective Translational Suppression Upon Cell Stress, Erica Wolin, Jimmy K. Guo, Mario R. Blanco, Isabel N. Goronzy, Darvesh Gorhe, Wenzhao Dong, Andrew A. Perez, Abdurrahman Keskin, Elizabeth Valenzuela, Ahmed A. Abdou, Carl R. Urbinati, Ross Kaufhold, H. Tomas Rube, Jailson Brito Querido, Mitchell Guttman, Marko Jovanovic
Spidr Enables Multiplexed Mapping Of Rna-Protein Interactions And Uncovers A Mechanism For Selective Translational Suppression Upon Cell Stress, Erica Wolin, Jimmy K. Guo, Mario R. Blanco, Isabel N. Goronzy, Darvesh Gorhe, Wenzhao Dong, Andrew A. Perez, Abdurrahman Keskin, Elizabeth Valenzuela, Ahmed A. Abdou, Carl R. Urbinati, Ross Kaufhold, H. Tomas Rube, Jailson Brito Querido, Mitchell Guttman, Marko Jovanovic
Biology Faculty Works
RNA-binding proteins (RBPs) regulate all stages of the mRNA life cycle, yet current methods generally map RNA targets of RBPs one protein at a time. To overcome this limitation, we developed SPIDR (split-and-pool identification of RBP targets), a highly multiplexed split-pool method that profiles the binding sites of dozens of RBPs simultaneously. SPIDR identifies precise, single-nucleotide binding sites for diverse classes of RBPs. Using SPIDR, we uncovered an interaction between LARP1 and the 18S rRNA and resolved this interaction to the mRNA entry channel of the 40S ribosome using cryoelectron microscopy (cryo-EM), providing a potential mechanistic explanation for LARP1’s role …
Ethical Implications Of Being A Holobiont, Scott F. Gilbert
Ethical Implications Of Being A Holobiont, Scott F. Gilbert
Biology Faculty Works
Developmental plasticity and holobiont theory have undermined the normative concepts of biological individuality. However, such traditional ideas of biological individuality have helped define and support Western ethical views into the 21st century. Guided by some of the ethical formulae of Simone Weil, Hans Jonas, and Alastair MacIntyre, this essay attempts to outline some possible trajectories for an ethics that is bounded by these new biological paradigms of environmental agency. Specifically, the ecological developmental biology concepts of plasticity and holobiont theory permit the “ethics of attention” to focus on the partnerships of living beings. Highlighting environmentally integrated life cycles and their …
A Glyoxal-Specific Aldehyde Signaling Axis In Pseudomonas Aeruginosa That Influences Quorum Sensing And Infection, Christopher J. Corcoran, Bonnie J. Cuthbert, David G. Glanville, Mailyn Terrado, Diana Valverde Mendez, Benjamin P. Bratton, Daniel E. Schemenauer, Valerie L. Tokars, Thomas G. Martin, Lawrence W. Rasmussen, Matthew C. Madison, Andrew F. Maule, Joshua W. Shaevitz, Boo Shan Tseng, Julian P. Whitelegge, Catherine Putonti, Amit Gaggar, Jordan R. Beach, Jonathan A. Kirk, Alfonso Mondragón, Abby R. Kroken, Jonathan P. Allen, Celia W. Goulding, Andrew T. Ulijasz
A Glyoxal-Specific Aldehyde Signaling Axis In Pseudomonas Aeruginosa That Influences Quorum Sensing And Infection, Christopher J. Corcoran, Bonnie J. Cuthbert, David G. Glanville, Mailyn Terrado, Diana Valverde Mendez, Benjamin P. Bratton, Daniel E. Schemenauer, Valerie L. Tokars, Thomas G. Martin, Lawrence W. Rasmussen, Matthew C. Madison, Andrew F. Maule, Joshua W. Shaevitz, Boo Shan Tseng, Julian P. Whitelegge, Catherine Putonti, Amit Gaggar, Jordan R. Beach, Jonathan A. Kirk, Alfonso Mondragón, Abby R. Kroken, Jonathan P. Allen, Celia W. Goulding, Andrew T. Ulijasz
Biology: Faculty Publications and Other Works
The universally conserved α-oxoaldehydes glyoxal (GO) and methylglyoxal (MGO) are toxic metabolic byproducts whose accumulation can lead to cell death. In the absence of a known, natural inducer of the GO-specific response in prokaryotes, we exploited RNA-seq to define a GO response in the bacterial pathogen Pseudomonas aeruginosa. The highest upregulated operon consisted of the known glyoxalase (gloA2) and an antibiotic monooxygenase (ABM) domain of unknown function - renamed here Aldehyde responsive quorum-sensing Inhibitor (ArqI). The arqI-gloA2 operon is highly specific to GO induction and ArqI protein responds by migrating to the flagellar pole. An ArqI atomic structure revealed several …
The High Burden Of Depression, Anxiety, And Stress Among University Students In Southern Iraq: A Cross-Sectional Study, Hassan Al-Karagoly, Zahraa Al-Attar, Hjar Al-Asadi, Sajad Al-Lahibi, Russul Al-Fartousi, Teeba Al-Jadry, Menatallah Bali, Baneen Al-Hasnawi, Hanan Al-Aboudi, Zainab Al-Fadliu, Ali Al-Mosawi, Zahraa Al-Aboudi, Qassim Al-Rubaie, Mohsin Al-Samawi, Abdulsalam Halboup
The High Burden Of Depression, Anxiety, And Stress Among University Students In Southern Iraq: A Cross-Sectional Study, Hassan Al-Karagoly, Zahraa Al-Attar, Hjar Al-Asadi, Sajad Al-Lahibi, Russul Al-Fartousi, Teeba Al-Jadry, Menatallah Bali, Baneen Al-Hasnawi, Hanan Al-Aboudi, Zainab Al-Fadliu, Ali Al-Mosawi, Zahraa Al-Aboudi, Qassim Al-Rubaie, Mohsin Al-Samawi, Abdulsalam Halboup
AUIQ Complementary Biological System
University students often face significant academic, social, and environmental pressures, making them particularly vulnerable to psychological distress. Despite this, there is limited evidence regarding the prevalence and associated factors of mental health problems among university students in Iraq. Therefore, this study aimed to assess the prevalence and severity of depression, anxiety, and stress in this population and to examine their associations with sociodemographic characteristics, insomnia, internet use, and physical activity. A cross-sectional study was conducted among Iraqi university students using a structured questionnaire, including the DASS-21, Insomnia Severity Index, and Internet Addiction Test. Descriptive and inferential statistics were used to …
Investigating The Capacity Of Tdp-43 Low Complexity Domain To Target Protein Aggregates In Yeast, Nicholas J. Grahame
Investigating The Capacity Of Tdp-43 Low Complexity Domain To Target Protein Aggregates In Yeast, Nicholas J. Grahame
Biology Summer Fellows
Utilizing protein TDP-43 and fluorescent proteins to:
Investigate TDP-43’s LCD region in protein aggregates. Use fluorescent protein tagging to visualize co-localization and aggregation. Leverage yeast as a model system for studying LLPS and aggregation.
Can we target chaperone proteins to TDP-43 LCD region?
Synthesis Of Cancrinite Zeolite From Toraja Natural Bentonite For Heavy Metal Removal From Wastewater, Yuli Astuti, Paulina Taba, Siti Fauziah, Syarifuddin Liong, Yusafir Hala, Nur Umriani Permatasari, Satria Putra Jaya Negara, Fadliah Fadliah
Synthesis Of Cancrinite Zeolite From Toraja Natural Bentonite For Heavy Metal Removal From Wastewater, Yuli Astuti, Paulina Taba, Siti Fauziah, Syarifuddin Liong, Yusafir Hala, Nur Umriani Permatasari, Satria Putra Jaya Negara, Fadliah Fadliah
Karbala International Journal of Modern Science
This study explores the production of cancrinite (CAN) zeolite from bentonite found in Toraja (a place in South Sulawesi Province, Indonesia) and its effectiveness in removing Pb2+ and Fe3+ ions from wastewater. The synthesis was carried out using a hydrothermal method with varying NaOH concentrations, where a single phase of zeolite was formed at 5 M, as confirmed through XRD analysis. FTIR results showed the characteristics of CAN zeolite with typical absorption peaks at 676, 622, and 565 cm-1, as well as the presence of carbonate groups (CO₃2-) at 1300-1400 cm-1. SEM …
Machine Learning Crime Prediction Models And The Gap Between Research And Implementation: A Systematic Review, Ricardo Huamantingo, Miguel Cano-Lengua, Ciro Rodriguez
Machine Learning Crime Prediction Models And The Gap Between Research And Implementation: A Systematic Review, Ricardo Huamantingo, Miguel Cano-Lengua, Ciro Rodriguez
Karbala International Journal of Modern Science
A crime is an illegal or violent act committed by one individual against another. The increasing crime rate has become a major concern as it negatively affects people's quality of life and generates significant social and economic costs. This study aims to identify the most widely used machine learning (ML) models for crime prediction, determine evaluation metrics for assessing model performance, and analyze key data characteristics to enhance real-world implementation. The study follows the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) methodology. A search string was formulated using the population, intervention, comparison, and outcomes (PICO) framework and applied …
Psilostachyin B As Potential Immune Checkpoint Inhibitor Targeting Ctla-4 And Pd-L1 In The Development Of Cancer Immunotherapy: A Computational Investigation, Moh Dliyauddin, Nabila Shafa Yumna Salsabila, Noviana Dwi Lestari, Sapti Puspitarini, Mansur Ibrahim, Sri Rahayu, Muhammad Sasmito Djati, Muhaimin Rifa’I
Psilostachyin B As Potential Immune Checkpoint Inhibitor Targeting Ctla-4 And Pd-L1 In The Development Of Cancer Immunotherapy: A Computational Investigation, Moh Dliyauddin, Nabila Shafa Yumna Salsabila, Noviana Dwi Lestari, Sapti Puspitarini, Mansur Ibrahim, Sri Rahayu, Muhammad Sasmito Djati, Muhaimin Rifa’I
Karbala International Journal of Modern Science
Immunotherapy is a promising treatment approach by targeting immune checkpoints such as CTLA-4 and PD-L1 to overcome cancer progression. The utilization of Curcuma longa and Phyllanthus niruri as potential immune checkpoint inhibitors offers an alternative cancer therapy. Computational analyses including molecular docking and molecular dynamics with validation using Molecular Mechanics/Poisson-Boltzmann Surface Area (MM-PBSA), Dynamic Cross-Correlation Matrix (DCCM), and Principal Component Analysis (PCA), were performed in this study. Results show that Psilostachyin B is the most promising inhibitor candidate against CTLA-4 and PD-L1, with binding affinity values of -6.9 and -6.8 kcal/mol, respectively. Molecular dynamics simulation results indicated that Psilostachyin B …
Investigating Molecular Mechanisms Of Meiosis And Mitosis In Cryptosporidium Parvum, Abigail Kimball
Investigating Molecular Mechanisms Of Meiosis And Mitosis In Cryptosporidium Parvum, Abigail Kimball
Arts & Sciences Graduate Student Theses and Dissertations
The apicomplexan parasite Cryptosporidium parvum (Cp) is a major global contributor to infectious diarrhea in children and poses a serious threat to immunocompromised adults. This dissertation investigates Cp's unique life cycle, which alternates between sexual and asexual reproduction to achieve three critical objectives: producing oocysts capable of transmission, enhancing genetic variation through recombination, and generating sufficient progeny for survival. Sexual reproduction is essential for forming infectious oocysts that facilitate disease transmission. Yet, the process of meiosis in Cp has been historically understudied due to limitations of traditional in vitro culture methods. The newly developed air-liquid interface (ALI) culture system supports …
Characterization Of Dna Background On Duct Tape Stored In Domestic Environments, Elaan A. Lukasiewicz
Characterization Of Dna Background On Duct Tape Stored In Domestic Environments, Elaan A. Lukasiewicz
Student Theses
With lower detection limits for forensic DNA analysis, it is important to have a better understanding of background DNA levels unrelated to the crime to facilitate accurate data interpretation. Duct tape is used in crimes, e.g. to bind victims and seal drug packaging, and may be tested for DNA. To determine DNA background levels, twelve volunteers were recruited to donate a used roll of duct tape from their home. The duct tape was divided into three areas: inside, outside, and sides of the roll, and swabbed for DNA. The average concentration of DNA was determined for the inside (0.0723 ng/µL …
Role Of Staphylococcus Aureus And Streptococcus Pyogenes Biofilms On The Alternation Of Cellular Immunity In Pediat-Ric Tonsillitis Patients, Shayma Ali Hussein, Taban Kamal Rasheed
Role Of Staphylococcus Aureus And Streptococcus Pyogenes Biofilms On The Alternation Of Cellular Immunity In Pediat-Ric Tonsillitis Patients, Shayma Ali Hussein, Taban Kamal Rasheed
Karbala International Journal of Modern Science
This study examines the effect of Staphylococcus aureus and Streptococcus pyogenes biofilms on cellular hematological parameters and distribution and phenotyping of cellular immunity in mucosal tissue of tonsils. Thirty healthy controls and fifty pediatric tonsillitis patients participated in the research. Thirty isolated S. aureus and S. pyogenes were tested for biofilm-forming capability (BFC). Hematological parameters were assessed before tonsillectomy, and 9 tonsil samples were evaluated using hematoxylin and eosin stain to investigate the histopathological alterations. Immunohistochemistry (IHC) staining was carried out for detecting dendritic cells (CD1a), neutrophils (CD15), macrophages (CD68), helper T cells (CD4), and cytotoxic T cells (CD8). Hematological …