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The Effect Of Varying Environmental Conditions On The Growth Of Stenotrophomonas Maltophilia, Norah Alqahtani

Theses & Dissertations

Stenotrophomonas maltophilia has emerged as an important opportunistic pathogen in the debilitated host. It possesses the ability to target and colonize respiratory-tract epithelial cells and grow on the surface of medical devices. It is associated with a significant case-fatality ratio in cystic fibrosis patients. S. maltophilia species have the ability to grow in bacterial biofilms, which further complicates these infections by providing the opportunity for acquisition of antibiotic resistant genes. This study investigated the effects on the growth of different strains of the same species of S. maltophilia, ATCC 51331 and 13637, when the selected environmental factors are varied. …

Functional Trait Values, Not Trait Plasticity, Drive The Invasiveness Of Rosa Sp. In Response To Light Availability, Rebecca E. Drenovsky, Jennifer E. Murphy

Biology

PREMISE OF THE STUDY : Functional trait plasticity in resource capture traits has been suggested as an underlying mechanism promoting invasive species establishment and spread. Earlier studies on this mechanism treat invasiveness as a discrete characteristic (i.e., invasive vs. noninvasive) and do not consider the potential impacts of evolutionary history. In the present study, we used a continuous measure of invasiveness and a phylogenetic framework to quantify the relationship between functional trait expression, plasticity, and invasiveness in Rosa .

Examining The Combined Effects Of Dissolved Oxygen, Temperature, And Body Size On The Physiological Responses Of A Model Macrobenthic Polychaete Species, Capitella Teleta, Kelsey Burns Gillam

Dissertations

While the scientific community is in consensus that coastal systems are threatened by climate change, few climate change studies test the effects of more than one variable directly related to climate change. The dissolved oxygen (DO) levels of the ocean are currently subject to both global warming and eutrophication; 94% of all hypoxia zones are expected to experience >2°C increase by 2035. This dissertation aims to examine how a model organism responds to simultaneous thermal and DO stress involving four levels of DO (100%, 70%, 50%, and 20%) saturation and three temperatures (15°C, 20°C, and 25°C).

The polychaete, Capitella teleta …

Insights Into The Genomic And Metabolic Adaptations Of Termite Associated Verrucomicrobia Strains Using Functional And Comparative Genomics, Malini Sharadkumar Kotak

Biology Dissertations - Archive

The symbiotic gut organisms of termites play an important role in lignocellulose digestion and other related metabolic processes. Previous studies on Diplosphaera colitermitum TAV2, a Verrucomicrobium isolated from the hindgut of Reticulitermes flavipes, revealed its microaerophilic nature and involvement in important ecophysiological processes in the termite gut. In the present study, a detailed account of genomic sequences of 3 additional strains is provided, and the genomes of all 5 TAV strains isolated so far are compared, to gain a comprehensive understanding of these organisms. Our comparative genomic study shows that these strains represent two distinct species, and despite significant number …

Response Of Microbial Networks And Microbiomes To The Forest-To-Pasture Conversion In Amazon Soils, Md Abdul Wadad Khan

Biology Dissertations - Archive

The Amazon rainforest is the largest tropical rainforest ecosystem in the world, and an extremely important region ecologically. Due to the growing human needs mainly for cattle ranching and cultivation, the rainforest has been in the process of clearing since 1970s losing an average of 25,000 km annually. This ecosystem conversion has a substantially adverse impact on biological diversities, in which the response of microbial diversity has not been studied until recently. Several studies showed that the conversion severely altered microbial diversities, with an increased alpha and decreased beta diversities. Given that microorganisms are closely associated with soil-associated functions, where …

Examination Of The Relevance Of Pi3k And Pten Pathway In Ustilago Maydis., Nathaniel Edward Dalton

Electronic Theses and Dissertations

Ustilago maydis is a fungal pathogen that is an obligate parasite on Zea mays (Corn) in order to undergo and complete its sexual life cycle. The cells grow as a haploid form until they meet a compatible partner and undergo a dimorphic switch from a budding yeast-like cell type to a filamentous dikaryon. Infection of the host plant is characterized by leaf chlorosis, anthocyanin content, and formation of large galls that develop on the stem, leaves, cobs, and flowers. Many signaling cascades such as MAPK and PKA are involved in the regulation of the infection lifecycle. The Phosphatidylinosotiol 3 Kinase/ …

Identification And Characterization Of Genes Involved In Metabolism Of N5 Monoene Precursors To N5 Anacardic Acids In The Trichomes Of Pelargonium X Hortorum., Richa A. Singhal

Electronic Theses and Dissertations

Unusual monoenoic fatty acids (UMFA’s) and specialized metabolites called anacardic acids (AnAc) are produced in glandular trichomes of Pelargonium ´ hortorum (geranium). The UMFA’s, 16:1^∆11 and 18:1^∆13 are precursors for the synthesis of unsaturated AnAc 22:1n5and 24:1n5 that contribute to pest resistance in geraniums. UMFAs and their derived AnAc metabolites not only provide a useful biological marker that differentiates the biosynthetic pathway for unusual mononenes from the common fatty acids (i.e. stearic, palmitic, oleic, linoleic and linolenic) but also have industrial, medical and agricultural applications. Fatty acid biosynthesis enzymes like acyl carrier proteins (ACPs); thioesterases (TEs) and β-ketoacyl-ACP …

The Role Of Hif1alpha And Hif2alpha In Muscle Development And Satellite Cell Function, Shiqi Yang

Open Access Theses

Hypoxia inducible factors (HIFs) are central mediators of cellular responses to fluctuations of oxygen, an environmental regulator of stem cell activity. Muscle satellite cells are myogenic stem cells whose quiescence, activation, self-renewal and differentiation are influenced by microenvironment oxygen levels. However, the in vivo roles of HIFs in quiescent satellite cells and activated satellite cells (myoblasts) are poorly understood. Expression analyses indicate that HIF1α and HIF2α are preferentially expressed in pre- and post-differentiation myoblasts, respectively. Interestingly, double knockout of HIF1α and HIF2α (HIF1α/2α dKO) in embryonic myoblasts results in apparently normal muscle development and growth. However, HIF1α/2α dKO in postnatal …

The Relationship Between Protein And Phosphorus Digestion And Retention In Growing Pigs And Broiler Chickens, Pengcheng Xue

Open Access Dissertations

Xue, Pengcheng. Ph.D., Purdue University, December 2016. The Relationship between Protein and Phosphorus Digestion and Retention in Growing Pigs and Broiler Chickens. Major Professor: Dr. Layi Adeola. The objective of this study was to investigate the relationship between protein and P digestion and retention in growing pigs and broiler chickens. The methodology of determining the digestibility of AA and P and the effect of dietary N and P on the digestion and retention of these two nutrients were investigated.

An experiment was conducted in growing pigs to investigate the additivity of AID or SID of CP and AA in mixed …

Pharmacokinetics, Tissue Distribution, Synergistic Activity, And Antitumor Activity Of Two Isomeric Flavones, Crystal L. Whitted

Electronic Theses and Dissertations

Flavonoids are polyphenolic secondary metabolites found in plants that have bioactive properties including antiviral, antioxidant, and anticancer. Two isomeric flavone were extracted from Gnaphalium elegans and Achyrocline bogotensis, plants used by the people from the Andean region of South America as remedies for cancer. 5,7-dihydroxy-3,6,8-trimethoxy-2-phenyl-4H-chromen-4-one (5, 7–dihydroxy- 3, 6, 8 trimethoxy flavone/ flavone A) and 3,5-dihydroxy-6,7,8-trimethoxy-2-phenyl-4H-chromen-4-one (3, 5–dihydroxy-6, 7, 8–trimethoxy flavone/ flavone B) have shown antineoplastic activity against colon cancer cell lines dependent upon their differentiation status. Pharmacokinetic studies reported herein were used to determine dosing for antitumor assays, as well as determine target tissue concentration. These included the …

Fecal Bacterial Communities As An Indicator Of Trophic Interactions Among Anuran Larvae, Steven Jacob Everman

Master's Theses

Anurans are mass spawners, often with multiple females spawning together, resulting in thousands of tadpoles sharing a habitat. Such large numbers of tadpoles with limited dispersal can lead to intense competition for resources. Inter and intra-specific competition for food could have negative impacts on the growth and survival of smaller tadpoles. Fecal bacterial communities have the potential to be used as indicators of changes in diet making it possible to determine if tadpoles in the wild are eating the same food or not. After feeding on two prepared diets that differed in the percentage of complex carbohydrates, the fecal bacterial …

Bloom Or Bust: Retrospective Analysis Of The Giant Jellyfish, Nemopilema Nomurai (Scyphozoa: Rhizostomeae), Ecology In The East Asian Marginal Seas, Naomi Yoder

Master's Theses

The Giant Jellyfish, Nemopilema nomurai, is a large-bodied bloom-forming jellyfish that occurs in the semi-enclosed basins of the East Asian Marginal Seas. N. nomurai has bloomed more frequently in the past 20 years than in any period previously recorded. In Japan, recent N. nomurai blooms were responsible for millions of dollars in lost revenue and equipment damage to commercial fisheries alone. This study statistically analyzed 21 environmental factors in connection with N. nomurai occurrence (using occurrence as a proxy for blooms). Eight factors resulted in a statistically significant or marginally significant (p ≤ 0.10), linear or non-linear relationship with …

Investigation Of Lipid Profile Patterns Along Latitude In An Eastern Australian Cline And After Stress Selection In The Laboratory, And Experiments On Stress Tolerance With Rnai Knockdown Of Lipid Biosynthesis Genes, Li Ko

School of Biological Sciences: Dissertations, Theses, and Student Research

Homeoviscous adaptation in membranes and changes in energy storage lipids such as triacylglycerols (TAGs) are the two main themes of adaptation to environmental conditions. Basal patterns of lipid compositional profile of Drosophila melanogaster along a latitudinal gradient in the eastern coast of Australia indicate variations of lipidome associated with climatic patterns. Lipidome data were collected for eight locations along the eastern Australian cline for both sexes in D. melanogaster and D. simulans. To further investigate the relationship between lipidome patterns and environmental factors, we utilized laboratory selection studies using stress conditions including high temperature tolerance, desiccation survival, and chill-coma …

The Response Of A Predatory Fish, Ophiodon Elongatus, To A Marine Protected Area: Variation In Diet, Catch Rates, And Size Composition, Eric S. Anderson

Master's Theses

Marine Protected Areas (MPAs) are a management tool used to protect and sustain many ecologically and economically important fish species from overexploitation by recreational and commercial fishing. Lingcod (Ophiodon elongatus) and some of its prey species, such as rockfish (Sebastes spp.), are species that are protected from fishing in some California MPAs. Lingcod is an apex predator that consumes a variety of fish and invertebrate species. In this study, I sought to assess the effect of an MPA on the abundance, size and diet of Lingcod. I hypothesized that Lingcod in a no-take MPA would be more …

Effect Of Exotic Invasive Old World Climbing Fern (Lygodium Microphyllum) On Soil Properties, Pushpa G. Soti, Krish Jayachandran

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Old World climbing fern (Lygodium microphyllum) has become one of the most serious ecological threats to the integrity of the greater Everglades ecosystem of south Florida. In this study, we analyzed the effects of Old World climbing fern on surfacesoil characteristics at invaded sites in Florida. We compared soil characteristics of six invaded and adjacent uninvaded plots at three different locations. Our results show that the fern can grow and thrive in a wide range of soil types and the impact on the soil was site specific with effects being more prominent in sites with low nutrient status. Additionally, there …

Linking Transcriptional And Physiological Responses To High Light Stress In A Wild-Type And A Photomorphogenic Tomato Mutant, Jordyn Radke

Theses and Dissertations

Tomato (Solanum lycopersicon) is the leading vegetable crop worldwide and an important part of a healthy human diet. In this study we used Next-Generation Sequencing, metabolomics and gene ontologies to study the effects of high light stress on the photomorphogenic hp-2dg tomato mutant. Wild-type (cv. ‘Manapal’) and mutant plants were grown for six weeks under low light and transferred to high light for one week. Illumina-based RNA Sequencing was performed and analysis of differential gene expression identified over 650 transcripts that were strongly regulated by light intensity (FC>4, p2,p<0,01). HPLC analysis of tomato leaves showed differential accumulation of phenylpropanoid metabolites such as chlorogenic acid, rutin, and caffeoylglucaric acid which was strongly dependent on genotype and light condition. Our findings show insightful differences between the wildtype and the photomorphogenic mutant as well as novel genes involved in high light adaptation in plants.

Problems Of Multi-Species Organisms: Endosymbionts To Holobionts, David C. Queller, Joan E. Strassmann

Biology Faculty Research

The organism is one of the fundamental concepts of biology and has been at the center of many discussions about biological individuality, yet what exactly it is can be confusing. The definition that we find generally useful is that an organism is a unit in which all the subunits have evolved to be highly cooperative, with very little conflict. We focus on how often organisms evolve from two or more formerly independent organisms. Two canonical transitions of this type—replicators clustered in cells and endosymbiotic organelles within host cells—demonstrate the reality of this kind of evolutionary transition and suggest conditions that …

Detritus Quality And Locality Determines Survival And Mass, But Not Export, Of Wood Frogs At Metamorphosis, Joseph Milanovich, Kyle Barrett, John A. Crawford

Biology: Faculty Publications and Other Works

Single-site experiments have demonstrated detritus quality in wetlands can have strongly negative, neutral, and even positive influences on wildlife. However, an examination of the influence of detritus quality across several regions is lacking and can provide information on whether impacts from variation in detritus quality are consistent across species with wide ranges. To address this gap in regional studies we examined effects of emergent and allochthonous detritus of different nutrient qualities on amphibians and assessed a mechanism that may contribute to potential impacts. We used aquatic mesocosms to raise wood frogs (Rana sylvatica) from two regions of the …

Detritus Quality And Locality Determines Survival And Mass, But Not Export, Of Wood Frogs At Metamorphosis, Joseph R. Milanovich, Kyle Barrett, John A. Crawford

Faculty Scholarship

Single-site experiments have demonstrated detritus quality in wetlands can have strongly negative, neutral, and even positive influences on wildlife. However, an examination of the influence of detritus quality across several regions is lacking and can provide information on whether impacts from variation in detritus quality are consistent across species with wide ranges. To address this gap in regional studies we examined effects of emergent and allochthonous detritus of different nutrient qualities on amphibians and assessed a mechanism that may contribute to potential impacts. We used aquatic mesocosms to raise wood frogs (Rana sylvatica) from two regions of the United States …

Fluctuating Asymmetry In Two Common Freshwater Fishes As A Biological Indicator Of Urbanization And Environmental Stress Within The Middle Chattahoochee Watershed, William I. Lutterschmidt, Samantha L. Martin, Jacob F. Schaefer

Faculty Publications

Deviations in bilateral symmetry or fluctuating asymmetry of an organism may result under environmental stressors that reduce developmental homeostasis and stability. Anthropogenic stressors such as increased urbanization can negatively impact environmental quality of aquatic ecosystems. Researchers have stressed the value in finding easy, accurate and inexpensive methods for assessing potential stress within ecosystems. Here we use fluctuating asymmetry (FA) as a useful quantitative tool in assessing the environmental quality and potential urban-based stressors within eight creeks of the Bull and Upatoi Creeks Watershed within the larger watershed of the Middle Chattahoochee. Using Geographic Information System (GIS), we characterize land-use patterns …

Plant Electrical Signal Classification Based On Waveform Similarity, Yang Chen, Dong-Jie Zhao, Zi-Yang Wang, Zhong-Yi Wang, Guiliang Tang, Lan Huang

Michigan Tech Publications, Part 1

(1) Background: Plant electrical signals are important physiological traits which reflect plant physiological state. As a kind of phenotypic data, plant action potential (AP) evoked by external stimuli—e.g., electrical stimulation, environmental stress—may be associated with inhibition of gene expression related to stress tolerance. However, plant AP is a response to environment changes and full of variability. It is an aperiodic signal with refractory period, discontinuity, noise, and artifacts. In consequence, there are still challenges to automatically recognize and classify plant AP; (2) Methods: Therefore, we proposed an AP recognition algorithm based on dynamic difference threshold to extract all waveforms similar …

Effects Of Parasitism And Mite Control Methods On European Starling Development, Aderinsola Oluwasikemi Odetunde

Theses and Dissertations

Certain developmental stressors can lead to developmental trade-offs in young organisms. Hematophagous ectoparasites are a common stressor experienced by European starlings, and we wished to explore what aspects of an ectoparasite infestation drove trade-offs. The first part of this study was to test the hypothesis that blood loss was the sole mediator of trade-offs due to hematophagous ectoparasite infestation. We used nestlings that were exposed to mites in the nests, nestlings in mite-reduced nests experiencing supplementary blood loss, and nestlings in mite reduced nests with no supplementary blood loss. We also used a new heat treatment to reduce mites in …

What’S In The Gift? Towards A Molecular Dissection Of Nuptial Feeding In A Cricket, Yannick Pauchet, Natalie Wielsch, Paul A. Wilkinson, Aleš Svatoš, Scott K. Sakaluk, Richard H. Ffrench-Constant, David G. Heckel, John Hunt

Faculty Publications – Biological Sciences

Nuptial gifts produced by males and transferred to females during copulation are common in insects. Yet, their precise composition and subsequent physiological effects on the female recipient remain unresolved. Male decorated crickets Gryllodes sigillatus transfer a spermatophore to the female during copulation that is composed of an edible gift, the spermatophylax, and the ampulla that contains the ejaculate. After transfer of the spermatophore, the female detaches the spermatophylax and starts to eat it while sperm from the ampulla are evacuated into the female reproductive tract. When the female has finished consuming the spermatophylax, she detaches the ampulla and terminates sperm …

A Francisella-Like Endosymbiont In The Gulf Coast Tick Evolved From A Mammalian Pathogen, Jonathan G. Gerhart, Abraham S. Moses, Rahul Raghavan

Biology Faculty Publications and Presentations

Ticks (order Ixodida) vector pathogenic bacteria that cause diseases in humans and other mammals. They also contain bacteria that are closely related to pathogens but function as endosymbionts that provide nutrients that are missing from mammalian blood—their sole food source. For instance, mammalian pathogens such as Coxiella burnetii and Francisella tularensis, as well as Coxiella-like and Francisella-like endosymbionts (CLEs and FLEs, respectively) occur in ticks worldwide. However, it is not clear whether the pathogens evolved from symbionts or symbionts from pathogens. Recent studies have indicated that C. burnetii likely originated from a tick-associated ancestor, but the origins …

Principles Of Biology Ii (Valdosta State University), Joshua Reece, Gretchen Bielmyer, John Elder, Theresa Grove

Biological Sciences Grants Collections

This Grants Collection for Principles of Biology II was created under a Round Four ALG Textbook Transformation Grant.

Affordable Learning Georgia Grants Collections are intended to provide faculty with the frameworks to quickly implement or revise the same materials as a Textbook Transformation Grants team, along with the aims and lessons learned from project teams during the implementation process.

Documents are in .pdf format, with a separate .docx (Word) version available for download. Each collection contains the following materials:

• Linked Syllabus
• Initial Proposal
• Final Report

A Snapshot Of The Microbiome Of Ambylomma Tuberculatum Ticks Infesting The Gopher Tortoise, An Endangered Species, Khemraj Budachetri, Daniel Lyle Gaillard, Jaclyn Bo Williams, Nabanita Mukherjee, Shahid Karim

Faculty Publications

The gopher tortoise tick, Amblyomma tuberculatum, has a unique relationship with the gopher tortoise, Gopherus polyphemus, found in sandy habitats across the southeastern United States. We aimed to understand the overall bacterial community associated with A. tuberculatum while also focusing on spotted fever group Rickettsia. These tortoises in the Southern Mississippi region are a federally threatened species; therefore, we have carefully trapped the tortoises and removed the species-specific ticks attached to them. Genomic DNA was extracted from individual ticks and used to explore overall bacterial load using pyrosequencing of bacterial 16S rRNA on 454-sequencing platform. The spotted fever group …

Foraging Behavior Of Tetramorium Caespitum In An Urban Environment: The Effect Of Food Quality On Foraging, Nicole A. Crofton, Sabrina R. D'Mello, Nene S. Sy

Student Publications

Animals' foraging strategies are directly related to their fitness. Proposed models of optimal foraging assume that animals strategize in terms of maximizing benefits over the cost of acquiring resources. Ants are social insects that are comparable in biomass to humans inhabiting the plant. As such, it is crucial to understand the foraging strategies of such an influential member of the ecosystem. With the ever-increasing rate of urbanization and human encroachment, it is even more important to consider the foraging patterns of species inhabiting urban areas. In this study we investigate optimal foraging strategies in the pavement ant, Tetramorium caespitum. Specifically, …

Talin2-Mediated Traction Force Drives Matrix Degradation And Cell Invasion, Lei Qi, Naser Jafari, Xiang Li, Zaozao Chen, Liqing Li, Vesa P. Hytönen, Benjamin T. Goult, Chang-Guo Zhan, Cai Huang

Markey Cancer Center Faculty Publications

Talin binds to β-integrin tails to activate integrins, regulating cell migration, invasion and metastasis. There are two talin genes, TLN1 and TLN2, encoding talin1 and talin2, respectively. Talin1 regulates focal adhesion dynamics, cell migration and invasion, whereas the biological function of talin2 is not clear and, indeed, talin2 has been presumed to function redundantly with talin1. Here, we show that talin2 has a much stronger binding to β-integrin tails than talin1. Replacement of talin2 Ser339 with Cys significantly decreased its binding to β1-integrin tails to a level comparable to that of talin1. Talin2 localizes at invadopodia and is indispensable …

Red Flour Beetle, Tribolium Castaneum, Development On Rice Fractions And Oviposition Preference, Brook A. Hale

Student Theses and Dissertations

The red flour beetle (RFB), Tribolium castaneum (Herbst), is a stored-product insect commonly found in rice mills. To understand how RFBs develop on different types of rice fractions occurring in a rice mill, I conducted three studies. I examined egg to adult development on nine rice fractions (rough rice, rice hulls, paddy rice dust, brown rice, rice bran, milled broken kernels, milled whole kernels, milled rice dust and rice flour) and identified brown rice, bran, milled kernels and rice flour were best for development. A second study examined neonate adult development using rice fractions and temperature as variables and found …

Traversing Swanton Road, 23rd Ed., James A. West

Academic, Government & Associated Organizational Research Resources

Situated at the northwest end of Santa Cruz County and occupying circa 30 square miles of sharply contrasted terrain, the Scott Creek Watershed concentrates within its geomorphological boundaries, at least 10-12% of California's flora, both native and introduced. Incorporated within this botanical overview but technically not part of the watershed sensustrictu, are the adjacent environs, ranging from the coastal strand up through the Western Terrace to the ocean draining ridge tops..... with the Arroyo de las Trancas/Last Chance Ridge defining the western/northwestern boundary and the Molino Creek divide, the southern demarcation. Paradoxically, the use/abuse that the watershed has sustained over …