Digital Commons Network^™

Propionate Enhances The Antimicrobial Defenses In Macrophages Against Listeria Monocytogenes, John Weis

Honors Theses

Propionate is a short chain fatty acid produced by the bacteria in the human gut. It has a wide range of nutritional functions in the human body. Several studies have also reported the effects of propionate on immune cell activation. In this study, we used Listeria monocytogenes as a model pathogen to determine how and what the effects of propionate on immune cells influence cell susceptibility to infections. Listeria is a dangerous intracellular pathogen that can replicate inside immune cells such as macrophages. Therefore, we can assess the impact of propionate on infection susceptibility by performing cell culture infections. We …

Morpho-Molecular Characterization Of The Litostomatean Predatory Ciliate Phialina Pupula (Müller, 1773) Foissner, 1983 (Haptoria, Lacrymariidae), Ľubomír Rajter, William Bourland, Peter Vďačný

Biology Faculty Publications and Presentations

The morphology and phylogenetic position of a haptorian ciliate, Phialina pupula (Müller, 1773) Foissner, 1983, isolated from microaerobic sandy sediments of the floodplain area of the Boise River, Idaho, U.S.A., were studied using live observation, protargol impregnation, scanning electron microscopy, and the 18S rRNA gene as well as the ITS region. The Boise population of P. pupula is characterized by a size of about 60–130 × 20–50 μm, an elliptical macronucleus with a single micronucleus, highly refractive dumbbell-shaped inclusions scattered throughout the cytoplasm and concentrated in the anterior body half, a single subterminal/terminal contractile vacuole, about 10 μm long rod-shaped …

Blue Grama Grass Genotype Affects Palatability And Preference By Semi-Arid Steppe Grasshoppers, Ava M. Hoffman, Holly Perretta, Nathan P. Lemoine, Melinda D. Smith

Biological Sciences Faculty Research and Publications

The semi-arid shortgrass steppe ecosystem of North America is dominated by blue grama grass (Bouteloua gracilis), a species with substantial intraspecific variability, ecological significance, and economic value. Yet no studies have addressed within species differences in blue grama palatability or insect herbivore preference with respect to plant traits. We performed an experimental study to test the palatability and preference of two blue grama genotypes, wild type versus cultivar, by grasshopper herbivores in the Gomphocerinae subfamily. We found strong evidence that cultivar blue grama was more palatable than wild type and that grasshoppers preferred cultivar plants. Although we could …

The Strength Of Migratory Connectivity For Birds En Route To Breeding Through The Gulf Of Mexico, Emily B. Cohen, Clark R. Rushing, Frank R. Moore, Michael T. Hallworth, Jeffrey A. Hostetler, Mariamar Gutierrez Ramirez, Peter P. Marra

Faculty Publications

The strength of migratory connectivity is a measure of the cohesion of populations among phases of the annual cycle, including breeding, migration, and wintering. Many Nearctic‐Neotropical species have strong migratory connectivity between breeding and wintering phases of the annual cycle. It is less clear if this strength persists during migration when multiple endogenous and exogenous factors may decrease the cohesion of populations among routes or through time along the same routes. We sampled three bird species, American redstart Setophaga ruticilla, ovenbird Seiurus aurocapilla, and wood thrush Hylocichla mustelina, during spring migration through the Gulf of Mexico region …

Modulation Of Listeria Monocytogenes Carbon Metabolism By Short Chain Fatty Acids, Diksha Bedi

Honors Theses

Listeria monocytogenes, a bacterial pathogen, is associated with foodborne infections in humans. Listeria encounters short chain fatty acids (SCFAs) during its transit through the intestine but its metabolic responses to SCFAs are not fully understood. To determine how Listeria metabolism is affected by SCFAs, I performed basic microbiology assays, including monitoring optical density, determining acetoin production, and measuring culture pH levels. I also performed preliminary 13C-NMR assays to provide a more in-depth look into carbon metabolism in SCFA-treated Listeria. I found that propionate-supplemented Listeria produced significantly more acetoin compared to no supplemented controls. Because acetoin is a product of central …

In The Face Of Antimicrobialsfactors Contributing To Listeria Monocytogenes Survival And Development Of Resistance, Andrea M. Vietti

Honors Theses

Bacterial antibiotic resistance is on an alarming rise worldwide, thus posing an urgent threat to human health. The rise in antibiotic resistance can be attributed to the overuse and misuse of antibiotics in both the healthcare and agricultural industries. In order to address this concern, this research aimed to identify environmental conditions that may lead to the development of antibiotic resistance in Listeria monocytogenes. L. monocytogenes is a foodborne pathogen capable of causing the disease listeriosis and is especially dangerous for immunocompromised populations. Although infected individuals are treated with antibiotics, an alarmingly high mortality rate of 20 percent still persists; …

Multispecies Character Displacement In Mexican Poeciliopsis Fishes, Andrea J. Roth

Theses and Dissertations

Competition has long been recognized as a central force in shaping evolution, particularly through character displacement. Yet research on character displacement is biased as it has focused almost exclusively on pairs of interacting species while ignoring multispecies interactions. Unfortunately, communities are seldom so simple that only pairs of species interact, and it is not clear if inferences from pairwise interactions are sufficient to explain patterns in nature. A more realistic approach is to ask how traits evolve when multiple species interact. Here I explore the importance of multispecies competitive interactions on trait evolution in four congeneric species of livebearing fishes …

The Glycosyltransferase Gene Elt1 (Osugt90a1) Protects Plasma Membranes During Chilling Stress In Rice, Yao Shi

Dissertations (1934 -)

Rice (Oryza sativa L.) has a sub-tropically origin and is sensitive to low-temperature stress at the young seedling stage. Very few effector genes that code enzymes involved in low-temperature stress response mechanisms have been identified so far. Here, we report a genome-wide association study (GWAS) mapping and a Bi-parental Quantitative Trait Loci (QTL) mapping using 202 O. sativa accessions from the Rice Mini-Core (RMC) collection, which uncovered 48 QTL across all 12 rice chromosomes associated with five chilling tolerance indices. In addition, we characterized qLTSS4-1, a novel strong-effect low-temperature seedling survivability (LTSS) QTL and its associated gene, Os04g24110, which is …

Microarray Analysis Identifies Potential Genes Associated With Botrytis Cinerea And Hormonal Stresses, Kenna Marie Whitley

Biology Theses

Biotic and abiotic stresses critically influence plant survival and growth; survival depends on the ability to correctly sense and react to their environment. Certain environmental stresses must be overcome through careful manipulation of internal levels, and of the resulting signaling cascades. Hormones signaling networks and the crosstalk among each respective hormone signaling pathway are principle for response mediation via transcriptional reprogramming or altered signaling pathways. The long-term objective is to determine how plants sense biotic stresses, and how hormone signaling networks control and direct plant responses to the fungal pathogen Botrytis cinerea. This research aims to identify commonly regulated genes …

Snowshoe Hares (Lepus Americanus) Alter Feeding Behavior In Response To Coyote (Canis Latrans) And Moose (Alces Alces) Cues At Diverse Vegetation Densities, Zachary K. Lankist

Student Scholarship

Prey interpret predator cues as a warning and use them to assess the danger of a given area. Multiple prey species avoid chemical cues from predators at feeding sites because the risk of death outweighs the benefit of food. However, we lack information regarding avoidance of chemical cues from competitors as well as how foraging behavior changes alongside vegetative cover. To test if chemical cues and veget~tive cover alter prey vigilance, number of visits, and time spent at feeding sites, I observed snowshoe hares (Lepus americanus) in plots containing coyote (Canis latrans; predator) and moose (Alces alces; competitor) urine across …

Ionic Liquid Polyacrylamide Gel Electrophoresis For Improved Separation Of Proteins And Small Egg White Peptides, Michael C. Brands

Honors Capstones

No abstract provided.

Assessment Of Oyster Mushroom Production And Profitability In Harare Urban Andperiurban Areas (Ruwa), Zimbabwe, Memory Mutema, Kiswell Basira, Dexter Savadye, Wilson Parawira

Tanzania Journal of Science

The study is an evaluation of the profitability of oyster mushroom production by small scale producers in urban and peri-urban settings with particular attention on trends in production and revenue during the period of 2014–2017. The Net Present Value (NPV), Discount rate and Benefit Cost Ratio (BCR) and Internal Rate of Return (IRR) were used to evaluate profitability. The average values of NPV, BCR and IRR for the year 2014–2017 were 13036.46, 15.75 and 141.42%, respectively. These values show that mushroom production has been very profitable during the period. Furthermore, production decreased between 2014 and 2015 before rising exponentially from …

Impact Of Intrinsic Physiological Factors In The Population Recovery Of Myotis Lucifugus (Little Brown Myotis) From White-Nose Syndrome, Caroline Burke, Caitlin Looney, Alissah Sillah, Christopher Richardson

Lesley University Community of Scholars Day

White-nose Syndrome (WNS) has decimated populations of hibernating bats in the US. In particular, Myotis lucifugus (little brown myotis) has been one of the most affected. We investigated the energetic cost of innate immune response and Pseudogymnoascus destructans (Pd) fungal activity on post-hibernating little brown myotis and the link with the recovery of local populations in New England from WNS. We captured bats at one of each of 4 colonies in Eastern Massachusetts and Southern New Hampshire, consecutively, every 14 days to minimize disturbance to the colony. Blood samples were collected from each bat. Respirometry trials were performed on each …

Mechanisms To Regulate Genes Encoding Clinically Relevant Multidrug Transporters At The Crossroads Of Antibiotic Resistance And Oxidative Stress Detection, Afsana Sabrin

LSU Doctoral Dissertations

Multiple Antibiotic Resistance Regulators (MarRs) are DNA binding proteins involved in bacterial survival and pathogenesis. My PhD dissertation focuses on a MarR homolog, OstR, which regulates genes encoding major multidrug transporters, a resistance-nodulation-division (RND) and an E. coli multidrug resistance B (EmrB) efflux pump homolog in Burkholderia thailandensis. The ostR gene is divergently oriented from genes encoding a hypothetical protein (Hyp) and an RND transporter and adjacent to a gene encoding an EmrB transporter. OstR binds to the promoters of each gene (K_d = 64.9 ± 8.0 nM, K_d = 126.1 ± 10.9 nM and K …

Urinary Ratio Of Sodium And Potassium In Irish Adults, Eoin James Morrissey, M. Giltinan, L. Kehoe, A. P. Nugent, B. Mcnulty, A. Flynn, Janette Walton

Department of Biological Sciences Publications

Cardiovascular Disease (CVD) is one of the leading causes of morbidity and mortality in the world accounting for approximately one third of global deaths. A diet low in sodium (Na) and high in potassium (K) is widely recommended as a strategy to lower blood pressure and to reduce the risk of CVD. The independent roles that both sodium and potassium play in blood pressure have been long established, however in recent times increasing evidence has suggested that an individual’s Na:K ratio is a more important predictor of hypertension than either sodium or potassium intake alone. The Food Safety Authority of …

Supervised Dimension Reduction For Large-Scale "Omics" Data With Censored Survival Outcomes Under Possible Non-Proportional Hazards, Lauren Spirko-Burns, Karthik Devarajan

COBRA Preprint Series

The past two decades have witnessed significant advances in high-throughput ``omics" technologies such as genomics, proteomics, metabolomics, transcriptomics and radiomics. These technologies have enabled simultaneous measurement of the expression levels of tens of thousands of features from individual patient samples and have generated enormous amounts of data that require analysis and interpretation. One specific area of interest has been in studying the relationship between these features and patient outcomes, such as overall and recurrence-free survival, with the goal of developing a predictive ``omics" profile. Large-scale studies often suffer from the presence of a large fraction of censored observations and potential …

Sustainable Agriculture Lesson For Middle School Classrooms, Sara Colombe, Madhav P. Nepal, Jennifer Mclaughlin, Matthew L. Miller, Larry B. Browning, P. Troy White

iLEARN Teaching Resources

In this lesson, students will learn about sustainability, where farmers/agriculturists can meet the needs of food, fiber, and fuel for the growing population. Students learn about growing population, its growth rate, major food source, sustainability barrel, potential ripple effects of positive impacts as well as the food waste and its effects.

Silkworms With Spider Silklike Fibers Using Synthetic Silkworm Chow Containing Calcium Lignosulfonate, Carbon Nanotubes, And Graphene, Xiaoli Zhang, Ana Laura Licon, Thomas I. Harris, Paula F. Oliveira, Bailey J. Mcfarland, Blake E. Taurone, Brittney J. Walsh, Brianne E. Bell, Caleb T. Walker, Randolph V. Lewis, Justin A. Jones

Biology Faculty Publications

Silkworm silk has become increasingly relevant for material applications. However, the industry as a whole is retracting because of problems with mass production. One of the key problems is the inconsistent properties of the silk. A means by which to improve the silk material properties is through enhanced sericulture techniques. One possible technique is altering the feed of the silkworms to include single-wall carbon nanotubes (SWNTs) or graphene (GR). Recently published results have demonstrated substantial improvement in fiber mechanical properties. However, the effect of the surfactant used to incorporate those materials into the feed on the fiber mechanical properties in …

Pregnancy In Zoo-Managed African Elephants (Loxodonta Africana): Investigating Possible Hormonal And Metabolic Indicators Of Successful And Unsuccessful Pregnancies., Chelsi Marolf

UNO Student Research and Creative Activity Fair

Female African elephants (Loxodanta africana) in zoos in the United States currently have high rates of ovarian acyclicity and if they do become pregnant, the calf is often lost before or during birth. This issue likely stems from various metabolic and reproductive factors, including obesity, advanced age, and stress. While this is a complicated problem, analyzing certain hormones related to reproduction and nutrition in elephants might reveal biological indicators for successful and unsuccessful pregnancies in African elephants. The goal of this study is to create a range of hormone levels throughout a typical successful pregnancy, and to compare …

The Demographic And Life-History Costs Of Fear: Trait-Mediated Effects Of Threat Of Predation On Aedes Triseriatus, Geoffrey D. Ower, Steven A. Juliano

Faculty Publications – Biological Sciences

1. Predators alter prey populations via direct lethality (density-mediated effects), but in many taxa, the indirect nonlethal threat of predation may be almost as strong an effect, altering phenotypically plastic traits such as prey morphology, behavior, and life history (trait-mediated effects). There are costs to antipredator defenses and the strength of prey responses to cues of predation likely depends on both the perceived level of risk and food availability.
2. The goal of this study was to test the hypothesis that the costs of nonlethal trait-mediated interactions impacting larvae can have carryover effects that alter life-history traits, adult characteristics, and ultimately population …

Seasonal Origins Of Soil Water Used By Trees, Scott T. Allen, James W. Kirchner, Sabine Braun, Rolf T. W. Siegwolf, Gregory R. Goldsmith

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Rain recharges soil water storages and either percolates downward into aquifers and streams or is returned to the atmosphere through evapotranspiration. Although it is commonly assumed that summer rainfall recharges plant-available water during the growing season, the seasonal origins of water used by plants have not been systematically explored. We characterize the seasonal origins of waters in soils and trees by comparing their midsummer isotopic signatures (δ2H) to seasonal isotopic cycles in precipitation, using a new seasonal origin index. Across 182 Swiss forest sites, xylem water isotopic signatures show that summer rain was not the predominant water source …

Draft Genome Assembly And Population Genetics Of An Agricultural Pollinator, The Solitary Alkali Bee (Halictidae: Nomia Melanderi), Karen M. Kapheim, Hailin Pan, Cai Li, Charles Blatti Ill, Brock A. Harpur, Panagiotis Ioannidis, Beryl M. Jones, Clement F. Kent, Livio Ruzzante, Laura Sloofman, Eckart Stolle, Robert M. Waterhouse, Amro Zayed, Guojie Zhang, William T. Wcislo

Biology Faculty Publications

Alkali bees (Nomia melanderi) are solitary relatives of the halictine bees, which have become an important model for the evolution of social behavior, but for which few solitary comparisons exist. These ground-nesting bees defend their developing offspring against pathogens and predators, and thus exhibit some of the key traits that preceded insect sociality. Alkali bees are also efficient native pollinators of alfalfa seed, which is a crop of major economic value in the United States. We sequenced, assembled, and annotated a high-quality draft genome of 299.6 Mbp for this species. Repetitive content makes up more than one-third of …

Student-Faculty Collaborative Research Grant Report, Megan Bestwick

Post-Grant Reports

Mitochondria are essential organelles in most eukaryotic cells because of their role in metabolism and the production of ATP by the oxidative phosphorylation (OXPHOS) pathway, as well as other key cellular processes. Metal cofactors, such as copper (Cu) and iron (Fe), are incorporated into OXPHOS protein complexes of yeast located within the inner membrane of the mitochondria. Misincorporation or modulation of these available metals in mitochondrial enzymes leads to the production of reactive oxygen species (ROS). ROS are reactive molecules containing oxygen such as peroxides, superoxide, and hydroxyl radicals. Yeast are a good model for studying aging and the effect …

Drought And Small-Bodied Herbivores Modify Nutrient Cycling In The Semi-Arid Shortgrass Steppe, Nathan P. Lemoine, Melinda D. Smith

Biological Sciences Faculty Research and Publications

Climate change will increase the frequency of droughts over the next century, with severe consequences for ecosystem function in semi-arid grasslands. The shortgrass steppe (SGS) experiences some of the largest interannual variation in precipitation among terrestrial biomes and exhibits extremely high sensitivity to drought. Yet despite decades of research describing the consequences of drought for ecosystem function in the SGS, we currently have little information regarding the impact of drought on bioavailability of important nutrients other than nitrogen, the contribution of herbivores to bioavailable concentrations of these nutrients, and whether drought alters herbivore-derived nutrient cycling. To quantify the impacts of …

Mrub_3018 Is Orthologous To E. Coli B2759 (Casb), Kyle Parker, Dr. Lori Scott

Meiothermus ruber Genome Analysis Project

This project is part of the Meiothermus ruber genome analysis project, which uses a collection of online bioinformatics tools to predict gene function. We studied the biological activity of the Mrub_3018 gene, which we hypothesize is orthologous to E. coli gene B2759. We predicted that Mrub_3018(DNA coordinates 3057916… 3058524) encodes the protein CasB. CasB is a protein in the CRISPR CASCADE that will function as a structural protein. When the rest of the proteins form an “S” formation CasB will connect the front and back of the “S” creating a back bone for the structure. It will help bind DNA …

Biogeochemical Recuperation Of Lowland Tropical Forest During Succession, Benjamin W. Sullivan, Rachel L. Nifong, Megan K. Nasto, Silvia Alvarez-Clare, Camie M. Dencker, Fiona M. Soper, Kevin T. Shoemaker, F. Yoko Ishida, Joana Zaragoza-Castells, Eric A. Davidson, Cory C. Cleveland

Biology Faculty Publications

High rates of land conversion and land use change have vastly increased the proportion of secondary forest in the lowland tropics relative to mature forest. As secondary forests recover following abandonment, nitrogen (N) and phosphorus (P) must be present in sufficient quantities to sustain high rates of net primary production and to replenish the nutrients lost during land use prior to secondary forest establishment. Biogeochemical theory and results from individual studies suggest that N can recuperate during secondary forest recovery, especially relative to P. Here, we synthesized 23 metrics of N and P in soil and plants from 45 secondary …

Identification Of The Alternative Oxidase Gene And Its Expression In The Copepod Tigriopus Californicus, Allison Mcdonald, Carly E. Tward, Willie Cygelfarb, Jaspreet Singh

Biology Faculty Publications

In addition to the typical electron transport system (ETS) in animal mitochondria responsible for oxidative phosphorylation, in some species there exists an alternative oxidase (AOX) pathway capable of catalyzing the oxidation of ubiquinol and the reduction of oxygen to water. The discovery of AOX in animals is recent and further investigations into its expression, regulation, and physiological role have been hampered by the lack of a tractable experimental model organism. Our recent DNA database searches using bioinformatics revealed an AOX sequence in several marine copepods including Tigriopus californicus. This species lives in tidepools along the west coast of North …

Predator Water Balance Alters Intraguild Predation In A Streamsidefood Web, Israel L. Leinbach, Kevin E. Mccluney, John L. Sabo

Biological Sciences Faculty Publications

Previous work suggests that animal water balance can influence trophic interactions, with predators increasing their consumption of water-laden prey to meet water demands.But it is unclear how the need for water interacts with the need for energy to drive trophic interactions under shifting conditions. Using manipulative field experiments, we show that water balance influences the effects of top predators on prey with contrasting ratios of water and energy, altering the frequency of intraguild predation. Water-stressed top predators (large spiders) negatively affect water-laden basal prey (crickets), especially male prey with higher water content, whereas alleviation of water limitation causes top predators …

Mfd Protects Against Oxidative Stress In Bacillus Subtilis Independently Of Its Canonical Function In Dna Repair, Holly Anne Martin, Katelyne E. Porter, Carmen Vallin, Tatiana Ermi, Natalie Contreras, Mario Pedraza-Reyes, Eduardo Robleto

Life Sciences Faculty Research

Background: Previous reports showed that mutagenesis in nutrient-limiting conditions is dependent on Mfd in Bacillus subtilis. Mfd initiates one type of transcription-coupled repair (TCR); this type of repair is known to target bulky lesions, like those associated with UV exposure. Interestingly, the roles of Mfd in repair of oxidative-promoted DNA damage and regulation of transcription differ. Here, we used a genetic approach to test whether Mfd protected B. subtilis from exposure to two different oxidants. Results: Wild-type cells survived tert-butyl hydroperoxide (t-BHP) exposure significantly better than Mfd-deficient cells. This protective effect was independent of UvrA, a component of the canonical …

An Evaluation Of Galleria Mellonella As A Model For Aspergillus Ustus Infections, Isak Jatoi

Journal of the South Carolina Academy of Science

Invasive aspergillosis is a serious cause of mortality and morbidity in immunocompromised hosts. In particular, the emergence of multidrug-resistant fungi, such as Aspergillus calidoustus, poses a concern for both doctors and patients. Rapid screening in vivo of novel antifungals is essential for discovering new treatments to combat invasive aspergillosis and improve prognosis of patients. As such, this study proposed the use of the greater wax moth, Galleria mellonella, as a quick way to model A. calidoustus infection. Due to the dangers of working with A. calidoustus in a high school setting, A. ustus was used in experimentation. It was …