Digital Commons Network^™

The Journey To Reach Herd Immunity: The United State's Efforts Towards Controlling Sars-Cov-2, Natalina Mastroianni

Senior Honors Projects

COVID-19 is a respiratory disease caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) which emerged in December of 2019 and has been the leading global health concern since. SARS-CoV-2 is a positive sense single-stranded RNA virus coated with viral spike proteins that has led to over 500,000 deaths in the United States and is approaching 3,000,000 deaths worldwide. As COVID-19 persists globally in such high numbers, the virus has been able to undergo mutations, leading to three prominent variants: the United Kingdom variant (B.1.1.7), the South Africa variant (B.1.351), and the Brazil variant (P.1). These variants are more transmissible, …

Exploring Effects Of Sample Storage, Preparation, And Tissue Type On Fourier Transform-Near Infrared Spectroscopy (Ft-Nirs) Ageing Across Fish Taxa, Keith Fuller

Theses and Dissertations

The accurate determination of age for fish is a vital part of both populationmanagement and ichthyological research. However, the methods which are primarily employed to age fish can be difficult, time consuming, inaccurate, or some combination thereof. Most ageing is currently done via hard parts (such as otoliths, vertebrae, or scales) which are read in a manner similar to tree rings with markings corresponding to known or presumed periods of time. Recently, Fourier transform-near infrared spectroscopy (FT-NIRS) has been investigated as a novel tool to age fish more quickly and objectively. This method works by recording the vibrational frequencies of …

Effect Of Oxidative Stress On Lifespan And Cellular Survival, Benedicth Onyeka Ukhueduan

Theses and Dissertations

When cells experience oxidative stress, the integrated stress response (ISR) signaling pathway is activated. One of the first outcomes of such ISR-activated response is to temporarily halt protein synthesis, which aids in cellular recovery. However, if cells cannot recover from the stress, they activate the cell death pathways which kills the affected cells, usually by apoptosis, which can then lead to either acquisition or prevention of diseases depending on the situation. In physiological aging, a compromised stress response is observed as an organism ages, which leads to disrupted homeostasis and elevated risk of disease. Thus, longevity of an organism is …

Moderate Heat-Assisted Gene Electrotransfer For Intradermal Dna Vaccination And Protein Replacement Therapy In The Skin, Chelsea Marie Edelblute

Biomedical Sciences Theses & Dissertations

Gene electrotransfer (GET) holds great promise for the delivery of therapeutic agents. The skin serves as an attractive target for GET due to its availability and unique cellular composition. Protein replacement therapy and DNA vaccination are potential applications for intradermal GET. The combination of moderate tissue preheating and GET has been shown to achieve elevated gene expression levels while reducing the necessary applied voltage. In the current work, we utilized a 16-pin multi-electrode array (MEA) and incorporated nine optical fibers, connected to an infrared laser, to pre-heat the tissue to 43°C before application of GET. In a guinea pig model, …

Microarthropod Contributions To Fitness Variation In The Common Moss ., Erin E. Shortlidge, Sarah B. Carey, Adam C. Payton, Stuart F. Mcdaniel, Todd N. Rosenstiel, Sarah M. Eppley

Biology Faculty Publications and Presentations

The evolution of sustained plant-animal interactions depends critically upon genetic variation in the fitness benefits from the interaction. Genetic analyses of such interactions are limited to a few model systems, in part because genetic variation may be absent or the interacting species may be experimentally intractable. Here, we examine the role of sperm-dispersing microarthropods in shaping reproduction and genetic variation in mosses. We established experimental mesocosms with known moss genotypes and inferred the parents of progeny from mesocosms with and without microarthropods, using a pooled sequencing approach. Moss reproductive rates increased fivefold in the presence of microarthropods, relative to control …

Experience, But Not Age, Is Associated With Volumetric Mushroom Body Expansion In Solitary Alkali Bees, Mallory A. Hagadorn, Makenna M. Johnson, Adam R. Smith, Marc A. Seid, Karen M. Kapheim

Biology Student Research

In social insects, changes in behavior are often accompanied by structural changes in the brain. This neuroplasticity may come with experience (experience-dependent) or age (experience-expectant). Yet, the evolutionary relationship between neuroplasticity and sociality is unclear, because we know little about neuroplasticity in the solitary relatives of social species. We used confocal microscopy to measure brain changes in response to age and experience in a solitary halictid bee (Nomia melanderi). First, we compared the volume of individual brain regions among newly emerged females, laboratory females deprived of reproductive and foraging experience, and free-flying, nesting females. Experience, but not age, …

Latitude Dictates Plant Diversity Effects On Instream Decomposition, Luz Boyero, Javier Pérez, Naiara López-Rojo, Alan M. Tonin, Francisco Correa-Araneda, Richard G. Pearson, Jaime Bosch, Ricardo J. Albariño, Sankarappan Anbalagan, Leon A. Barmuta, Leah Beesley, Francis J. Burdon, Adriano Caliman, Marcos Callisto, Ian C. Campbell, Bradley J. Cardinale, J. Jesús Casas, Ana M. Chará-Serna, Szymon Ciapała, Eric Chauvet, Jose Checo Colón-Gaud, Aydeé Cornejo, Aaron M. Davis, Monika Degebrodt, Emerson S. Dias, María E. Díaz, Michael M. Douglas, Arturo Elosegi, Andrea C. Encalada, Elvira De Eyto, Ricardo Figueroa, Alexander S. Flecker, André Frainer, Juliana S. França, Erica A. García, Gabriela García, Pavel E. García, Mark O. Gessner, Paul S. Giller, Jesús E. Gómez, Sergio Gómez, José F. Gonçalves Jr., Manuel A. S. Graça, Robert O. Hall Jr., Neusa Hamada, Luiz U. Hepp, Cang Hui, Daichi Imazawa, Tomoya Iwata, Edson S. A. Junior, Samuel K. Kariuki, Andrea Landeira-Dabarca, María Leal, Kaisa Lehosmaa, Charles M. M’ Erimba, Richard Marchant, Renato T. Martins, Frank O. Masese, Megan Camden, Brendan G. Mckie, Adriana O. Medeiros, Jen A. Middleton, Timo Muotka, Junjiro N. Negishi, Jesús Pozo, Alonso Ramírez, Renan S. Rezende, John S. Richardson, José Rincón, Juan Rubio-Ríos, Claudia Serrano, Angela R. Shaffer, Fran Sheldon, Christopher M. Swan, Nathalie S. D. Tenkiano, Scott D. Tiegs, Janine R. Tolod, Michael Vernasky, Anne Watson, Mourine J. Yegon, Catherine M. Yule

Biology: Faculty Publications

Running waters contribute substantially to global carbon fluxes through decomposition of terrestrial plant litter by aquatic microorganisms and detritivores. Diversity of this litter may influence instream decomposition globally in ways that are not yet understood. We investigated latitudinal differences in decomposition of litter mixtures of low and high functional diversity in 40 streams on 6 continents and spanning 113° of latitude. Despite important variability in our dataset, we found latitudinal differences in the effect of litter functional diversity on decomposition, which we explained as evolutionary adaptations of litter-consuming detritivores to resource availability. Specifically, a balanced diet effect appears to operate …

Ecological Physiology Of Rafinesque’S Big-Eared Bats (Corynorhinus Rafinesquii) Roosting In An Anthropogenic Structure In Arkansas, Benjamin N. Spitz

Student Theses and Dissertations

Rafinesque’s big-eared bats (Corynorhinus rafinesquii) are suffering habitat loss due to deforestation of bottomland hardwoods which an increase in agriculture forces maternity colonies to roost in anthropogenic structures. In Arkansas I explore how bats from maternity colonies in anthropogenic structures use torpor and how torpor is affected by chronic stress and ectoparasites. During June- August of 2018-2019, I surveyed a maternity colony inside a barn. Captured bats were tagged with temperature-sensitive transmitters and tracked to roost trees and the barn daily confirming day roosts. Using Lotek data loggers, data from transmitters were collected as skin temperature and compared to ambient …

A Computational Investigation Of The Biophysical Mechanisms Underlying Thermotaxis In The Afd Neurons Of Caenorhabditis Elegans, Zachary Mobille

Theses and Dissertations

Thermotaxis in the nematode Caenorhabditis elegans (C. elegans) is studied at the cellular scale of the amphid finger-like ciliated (AFD) neurons, which have previously been shown to be essential for thermoreception. The voltage and calcium signals of AFD during temperature stimuli are described with ordinary differential equations. The primary calcium model is a modified version of that published by Kuramochi and Doi in 2017 to explain the calcium responses of the chemosensitive amphid single-ciliated right (ASER) neuron to fluctuations in extracellular salt concentration. To account for the effects of temperature, changes to the stimuli conditions under which inactivation takes place …

The Distribution In Native Populations From Mexico And Central America Of The C677t Variant In The Mthfr Gene, Lucio A. Reyes

USF Tampa Graduate Theses and Dissertations

Objectives: To explore evolutionary hypotheses for the high frequencies of a substitution in the methylenetetrahydrofolate reductase (MTHFR) gene, in Mexican and Central American Indigenous populations.

Materials and methods: We obtained allele frequencies for the C677T variant in the MTHFR gene and ecological information for 37 indigenous samples from Mexico and Central America. We calculated Hardy–Weinberg equilibrium and computed Fst statistics. We computed correlations between the samples' allele frequencies and ecological and geochemical variables.

Results: Many of the samples have extremely high frequencies of the T allele (q̄ = 0.62, median = 0.66). In this region, the frequency of the T …

Epigenetics As Driver Of Adaptation And Diversification In Microbial Eukaryotes, Agnes K.M. Weiner, Laura A. Katz

Biological Sciences: Faculty Publications

No abstract provided.

Male Competition Reverses Female Preference For Male Chemical Cues, Z. Vilella-Pacheco, L. D. Mitchem, Vincent A. Formica, E. D. Brodie Iii

Biology Faculty Works

Females must choose among potential mates with different phenotypes in a variety of social contexts. Many male traits are inherent and unchanging, but others are labile to social context. Competition, for example, can cause physiological changes that reflect recent wins and losses that fluctuate throughout time. We may expect females to respond differently to males depending on the outcome of their most recent fight. In Bolitotherus cornutus (forked fungus beetles), males compete for access to females, but copulation requires female cooperation. In this study, we use behavioral trials to determine whether females use chemical cues to differentiate between males and …

Phenology Of Antler Casting And Occurrence Of Late-Breeding In Nebraska White-Tailed Deer, Brian C. Peterson, Patrick D. Farrell, Dave Fehlhafer, Miranda C. Reinson, Dustin H. Ranglack

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

White-tailed deer (Odocoileus virginianus) in Nebraska primarily breed in November (stimulated by photoperiod), but this season extends into December and January for unfertilized females and healthy fawns reaching the appropriate breeding weight by winter. Variation in the typical mating period can be attributed to geographic region, skewed sex ratios, and fawns reaching sexual maturity during their first year of birth. During April of 2019, we observed late season breeding by a male white-tailed deer in the central Platte River valley and documented late antler casting for this same late-copulating male. An additional male was observed in April of …

Ectopic Expression Of Pericentric Hsatii Rna Results In Nuclear Rna Accumulation, Mecp2 Recruitment, And Cell Division Defects, C. C. Landers, Christina Rabeler, E. K. Ferrari, Lia R. D'Alessandro , '21, D. D. Kang, J. Malisa, Safia M. Bashir , '20, Dawn M. Carone

Biology Faculty Works

Within the pericentric regions of human chromosomes reside large arrays of tandemly repeated satellite sequences. Expression of the human pericentric satellite HSATII is prevented by extensive heterochromatin silencing in normal cells, yet in many cancer cells, HSATII RNA is aberrantly expressed and accumulates in large nuclear foci in cis. Expression and aggregation of HSATII RNA in cancer cells is concomitant with recruitment of key chromatin regulatory proteins including methyl-CpG binding protein 2 (MeCP2). While HSATII expression has been observed in a wide variety of cancer cell lines and tissues, the effect of its expression is unknown. We tested the effect …

The Role Of Glutamine In Supporting Gut Health And Neuropsychiatric Factors, Brett J. Deters, Mir Saleem

Biology Faculty Articles

Recent research has shown that the amino acid glutamine can positively affect gut health by supporting the gut microbiome, gut mucosal wall integrity, and by modulating inflammatory responses. As modulated by the vagus nerve, via the enteric nervous system, the gut-brain connection can impact the brain's neurochemical environment. Poor gut health can disrupt the balance of neurotransmitters, which can result in neuropsychiatric based conditions such as depression. Glutamine supplementation may provide significant adjunctive nutritional support in cases of depression by promoting proper gut health and function.

Using Acoustic Telemetry To Analyze The Impacts Of Common Carp On Wild Rice Restoration, Franklin Zomer

All NMU Master's Theses

Wild rice (Zizania palustris) is an important cultural, spiritual, and dietary resource to Lake Superior Ojibwe. Common Carp (Cyprinus carpio) are an introduced species that negatively impact aquatic vegetation through changes in water quality, uprooting of plants, and consumption of seed. Acoustic telemetry was used to document Common Carp movements in Waishkey Bay in the upper St. Marys River, MI where wild rice habitat is present. Exclosures were established to measure the influence of carp presence on wild rice seeding success. Common Carp were observed to spend much of their time in Waishkey Bay but also …

Geometric Morphometric Comparison Of Abu Mullet, Planiliza Abu (Heckel, 1843) Populations In Bushehr Basin, Iran: Fatemeh Shabaninejad, Yazdan Keivany, Dara Bagheri, Fatemeh Shabaninejad, Yazdan Keivany, Dara Bagheri

Tanzania Journal of Science

Many fish behavior and habitats could be defined based on the fish morphology, thus, using the fish body shape, in addition  to its genetic characteristics, could be used to infer the type of fish habitat and its characteristics. This study aimed to compare the body shapes of five populations of abu mullet, Planiliza abu (Heckel, 1843), in Bushehr basin using geometric morphometric method. Some 162 specimens from Hendijan, Genaveh, Helleh, Kaki and Mond rivers were used. Three morphometric characters, total length (TL), fork length (FL) and standard length (SL) were measured. Samples were photographed from the left side, then 18 …

Antibacterial Activities Of Hyphaene Thebaica (Doum Palm) Fruit Extracts Against Intestinal Microflora And Potential Constipation Associated Pathogens In Yola Metropolis, Nigeria, Joel Ewansiha, Chidimma Ugo, Damaris Kolawole, Lilian Orji

Tanzania Journal of Science

This study aimed at determining the antibacterial activities of Hyphaene thebaica fruit extracts against some intestinal constipation associated bacteria. Qualitative analysis of some phytochemical constituents, agar well diffusion and broth dilution methods were used to determine the zones of inhibition and minimum inhibitory concentration (MIC) of the plant extracts. Phytochemical components viz flavonoids, saponins, terpenoids, tannins, phenols, alkaloids, glycosides and steroids were detected in the plant extracts, and the test organisms were susceptible to the plant extracts. The diameter zone of inhibition (DZI) obtained with n-hexane extract ranged from 15.10 ± 0.51 mm to 2.0 ± 0.55 mm against K. …

Wastewater Clarification And Microbial Load Reduction Using Agro-Forestry And Agricultural Wastes, Joel Njewa, Ephraim Vunain, Timothy Biswick

Tanzania Journal of Science

Five agro-wastes, namely: cassava peels, Irish potato peels, Jatropha curcas seeds, Moringa oleifera seeds and rice husks were investigated as plant-based coagulants for turbidity and microbial load removal from sewage wastewater. Moringa oleifera and Jatropha curcas seeds before usage were defatted with 95% ethanol and the active coagulating component was extracted with 1.0 M NaCl. For the other three agro-wastes, their ashes were evaluated for turbidity and microbial load removal. The ash was prepared through pyrolysis of the raw biomass at a temperature of 800 °C for 3 h. The effect of pH, coagulant dose, settling time on turbidity reduction …

Characterization, Antimicrobial And Toxicity Studies Of Silver Nanoparticles Using Opuntia Ficus Indica Leaves Extracts From Effurun, Delta State, Christiana Ogwuche, Harrison Moses

Tanzania Journal of Science

The silver nanoparticles were synthesized by reacting silver nitrate, a metal precursor with the extract obtained from the leaves of Opuntia ficus indica, which acts as a reducing and stabilizing agent. Formation of silver nanoparticles was indicated by colour change from light yellow to dark brown which was confirmed by ultraviolet-visible (UV-Vis) spectroscopy showing surface plasmon band at 369 nm resulting from relatively small amount of reductive biomolecules for the silver ion reduction. Scanning electron microscope (SEM) analysis gave the morphology of the nanoparticles and showed that the silver particles were of spherical shape. Fourier transform infrared (FTIR) spectrometer presented …

Potential Of Fungi Isolated From Diesel Contaminated Soil To Degrade Diesel, Oluwafemi Oyewole, Ramat Raji, Suzan Okeke, Gift Chukwuma, Japhet Yakubu

Tanzania Journal of Science

Diesel is a complex mixture and a common pollutant, consisting mainly of aliphatic hydrocarbons ranging from C9 to C23 and a number of aromatic compounds. The main purpose of this study was to isolate fungi from diesel contaminated soil for biodegradation of diesel contaminated soil. Two fungal species (Aspergillus flavus and Saccharomyces cerevisiae) were isolated from a diesel contaminated site using cultural and biochemical characterisation. The isolates were screened for their ability to utilize diesel as carbon source. The biodegradation rate of the fungi isolated was measured by determining the optical density using spectrophotometry. The fungal isolates were further tested …

Isolation And Quantification Of Flavonoids From Kigelia Africana (Lam.) Benth Fruit And Bark And Their Antiradical And Antibacterial Activities, Pamhidzai Dzomba, George Mhini

Tanzania Journal of Science

Kigelia africana is an evergreen deciduous tree used in Zimbabwe folklore medicine for wound and diabetes ulcers healing. This paper reports the isolation and quantification of flavonoids from stem barks and fruits of K. africana as well as their antibacterial and antiradical activities. Flavonoids in ethanol and ethyl-acetate extracts were quantified using UV-Vis spectrophotometry and were found to be 213.490 ± 0.001 mg/L and 36.614 ± 0.001 mg/L, respectively per quercetin equivalent. The preparative and analytical thin layer chromatography was used to profile the flavonoids from fruits and barks using ethyl-acetate and petroleum ether (3:7 v/v) mobile solvent systems. Ethanol …

Effects Of Time On Ph, Total Bacteria Counts, And Total Hydrocarbon Contents In The Bioremediation Of Crude Oil Contaminated Soil Using Indigenous Bio-Stimulants, Ita Uwidia, Osalodion Uwidia

Tanzania Journal of Science

This study was conducted to investigate the effect of time on pH, total bacteria counts, and total hydrocarbon contents in the bioremediation of crude oil contaminated soil using pig waste and sawdust as bio-stimulants. Dried soil samples (500 g each) were weighed each into seven different plastic bowls, and each bowl was contaminated with 10 g of crude oil. Six of the contaminated soil samples in six of the plastic bowls were amended with a combination of pig waste and sawdust as bio-stimulants in the ratio of 1:1 in amounts of 150 g, 125 g, 100 g, 75 g, 50 …

Microscopic And Genetic Characterization Of Bacterial Symbionts With Bioluminescent Potential In Pyrosoma Atlanticum, Alexis Berger, Patricia L. Blackwelder, Tamara Frank, Tracey Sutton, Nina Pruzinsky, Natalie Slayden, Jose V. Lopez

Biology Faculty Articles

The pelagic tunicate pyrosome, Pyrosoma atlanticum, is known for its brilliant bioluminescence, but the mechanism causing this bioluminescence has not been fully characterized. This study identifies the bacterial bioluminescent symbionts of P. atlanticum collected in the northern Gulf of Mexico using several methods such as light and electron microscopy, as well as molecular genetics. The bacteria are localized within the pyrosome light organs. Greater than 50% of the bacterial taxa present in the tunicate samples were the bioluminescent symbiotic bacteria Vibrionaceae as determined by utilizing current molecular genetics methodologies. A total of 396K MiSeq16S rRNA reads provided total pyrosome …

Artificial Nightlight Alters The Predator–Prey Dynamics Of An Apex Carnivore, Jesse R. Barber

Biology Faculty Publications and Presentations

Artificial nightlight is increasingly recognized as an important environmental disturbance that influences the habitats and fitness of numerous species. However, its effects on wide‐ranging vertebrates and their interactions remain unclear. Light pollution has the potential to amplify land‐use change, and as such, answering the question of how this sensory stimulant affects behavior and habitat use of species valued for their ecological roles and economic impacts is critical for conservation and land‐use planning. Here, we combined satellite‐derived estimates of light pollution, with GPS‐data from cougars Puma concolor (n = 56), mule deer Odocoileus hemionus (n = 263) and locations of cougar‐killed …

Lianas Explore The Forest Canopy More Effectively Than Trees Under Drier Conditions, Jose A. Medina-Vega, Frans Bongers, Stefan A. Schnitzer, Frank J. Sterck

Biological Sciences Faculty Research and Publications

1. Lianas rely on trees for support and access to high-light positions in the forest canopy, but the implications for how lianas explore the canopy compared to trees remain understudied. We present an in situ forest canopy study to test the hypotheses that: (1) lianas favour leaf display over stem investment compared to trees and (2) lianas have greater potential to colonize non-shaded, high-light areas effectively than trees.
2. We compared branches of 16 liana species with those of 16 sympatric tree species in the canopy of two lowland tropical forests with contrasting rainfall regimes in Panama using 40–50 m tall canopy …

Can Public Online Databases Serve As A Source Of Phenotypic Information For Cannabis Genetic Association Studies?, Matthew L. Aardema, Rob Desalle

Department of Biology Faculty Scholarship and Creative Works

The use of Cannabis is gaining greater social acceptance for its beneficial medicinal and recreational uses. With this acceptance has come new opportunities for crop management, selective breeding, and the potential for targeted genetic manipulation. However, as an agricultural product Cannabis lags far behind other domesticated plants in knowledge of the genes and genetic variation that influence plant traits of interest such as growth form and chemical composition. Despite this lack of information, there are substantial publicly available resources that document phenotypic traits believed to be associated with particular Cannabis varieties. Such databases could be a valuable resource for developing …

The C. Neoformans Cell Wall: A Scaffold For Virulence, Christine Chrissian

Dissertations, Theses, and Capstone Projects

Cryptococcus neoformans is a globally distributed opportunistic fungal pathogen and the causative agent of life threatening cryptococcal meningoencephalitis in immunocompromised individuals, resulting in ~180,000 deaths each year worldwide. A primary virulence-associated trait of this organism is the production of melanin. Melanins are a class of diverse pigments produced via the oxidation and polymerization of aromatic ring compounds that have a characteristically complex, heterogenous, and amorphous structure. They are synthesized by representatives of all biological kingdoms and share a multitude of remarkable properties such as the ability to absorb ultraviolet (UV) light and protect against ionizing radiation. Melanin production in fungi …

Modulation Of Bacterial Fitness And Virulence Through Antisense Rnas, Jess A. Millar, Rahul Raghavan

Biology Faculty Publications and Presentations

Regulatory RNAs contribute to gene expression control in bacteria. Antisense RNAs (asRNA) are a class of regulatory RNAs that are transcribed from opposite strands of their target genes. Typically, these untranslated transcripts bind to cognate mRNAs and rapidly regulate gene expression at the post-transcriptional level. In this article, we review asRNAs that modulate bacterial fitness and increase virulence. We chose examples that underscore the variety observed in nature including, plasmid- and chromosome-encoded asRNAs, a riboswitch-regulated as RNA, and as RNAs that require other RNAs or RNA binding proteins for stability and activity. We explore how as RNAs improve bacterial fitness …

The Multifunctional Roles Of Polyphenols In Plant-Herbivore Interactions, Sukhman Singh, Ishveen Kaur, Rupesh R. Kariyat

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

There is no argument to the fact that insect herbivores cause significant losses to plant productivity in both natural and agricultural ecosystems. To counter this continuous onslaught, plants have evolved a suite of direct and indirect, constitutive and induced, chemical and physical defenses, and secondary metabolites are a key group that facilitates these defenses. Polyphenols—widely distributed in flowering plants—are the major group of such biologically active secondary metabolites. Recent advances in analytical chemistry and metabolomics have provided an opportunity to dig deep into extraction and quantification of plant-based natural products with insecticidal/insect deterrent activity, a potential sustainable pest management strategy. …