Digital Commons Network^™

Basal Autophagy Induction Without Amp-Activated Protein Kinase Under Low Glucose Conditions, Tyisha Williams, L. J. Forsberg, B. Viollet, J. E. Brenman

Biology Faculty Research

When ATP levels in a cell decrease, various homeostatic intracellular mechanisms initiate attempts to restore ATP levels. As a prominent energy sensor, AMP-activated protein kinase (AMPK) represents one molecular gauge that links energy levels to regulation of anabolic and catabolic processes to restore energy balance. Although pharmacological studies have suggested that an AMPK activator, AIC AR (5-aminoimidazole-4-carboxamide ribonucleoside) may link AMPK activation to autophagy, a process that can provide short-term energy within the cell, AICAR can have AMPK-independent effects. Therefore, using a genetic-based approach we investigated the role of AMPK in cellular energy balance. We demonstrate that genetically altered cells, …

Virus-Encoded Homologs Of Cellular Interleukin-10 And Their Control Of Host Immune Function, Barry Slobedman, Peter A. Barry, Juliet V. Spencer, Selmir Avdic, Allison Abendroth

Biology Faculty Publications

No abstract provided.

Cuscuta Jepsonii (Convolvulaceae): An Invasive Weed Or An Extinct Endemic?, Mihai Costea, Saša Stefanović

Biology Faculty Publications

Despite their ecological significance, parasitic plants face more conservation challenges than do autotrophic plants. This is especially true for the groups that include weedy or invasive species such as Cuscuta. While approximately half of the Cuscuta (dodders) species may require conservation measures, the genus as a whole is sometimes posted on governmental lists of noxious or quarantine weeds. Our study challenges this stereotype and uses the case of C. jepsonii (Jepson’s dodder) to illustrate the precarious biodiversity and conservation status faced by many dodder species. Until now, Jepson’s dodder has been known only from its type collection. Consequently, its …

Host And Seasonal Effects On The Infection Dynamics Of Skrjabinoptera Phrynosoma (Ortlepp) Schulz, 1927, A Parasitic Nematode Of Horned Lizards, Kathryn Claire Hilsinger

College of Graduate Studies: Theses & Dissertations

Author's Abstract: Skrjabinoptera phrynosoma (Ortlepp) Schulz, 1927 is a common parasitic nematode of horned lizards. The life cycle of S. phrynosoma was described by Lee in 1957, but has received little attention since. The present study addressed effect of season as well as host characteristics on the infection dynamics in lizard hosts. In the Alvord Basin in southeastern Oregon, S. phrynosoma were collected from Phrynosoma platyrhinos Gerard 1852 horned lizards via stomach flushes, cloaca flushes and fecal pellet collections. Parasite load variables (number of nematodes per host, length of those nematodes, and total worm burden (ΣL)) were analyzed within three …

Antibacterial Activities Of Extracts From Some Turkish Endemic Plants On Common Fish Pathogens, Hakan Türker, Arzu Bi̇ri̇nci̇ Yildirim, Fatma Pehli̇van Karakaş, Hi̇lal Köylüoğlu

Turkish Journal of Biology

Antibacterial activities of 24 alcoholic and aqueous extracts from 8 endemic Turkish plants (Crocus abantensis, Crocus ancyrensis, Galanthus plicatus subsp. byzantinus, Paronychia chionaea, Astragalus gymnolobus, Trifolium pannonicum subsp.elongatum, Eryngium bithynicum, and Convolvulus galaticus) of 7 different families were screened. Antibacterial activity was carried out with 5 different fish pathogens (Aeromonas hydrophila, Yersinia ruckeri, Streptococcus agalactia, Lactococcus garvieae, and Enterococcus faecalis). Crude extracts of endemic plant extracts were applied against the bacteria using the disc diffusion method under in vitro conditions. A. hydrophila was the only inhibited bacteria from all alcoholic and aqueous extracts of C. ancyrensis, G. plicatus, T. pannonicum, …

An Ethnobotanical Field Survey In The Haymana District Of Ankara Province In Turkey, Fulya Sarper, Gali̇p Akaydin, Işil Şi̇mşek, Erdem Yeşi̇lada

Turkish Journal of Biology

Dietary, therapeutical, and other ethnobotanical utilizations of the wild plants grown in Haymana district of Ankara were investigated. Information was collected by face-to-face interviews with 160 individuals in 9 selected sites. The demographic characteristics of the informants were evaluated and cross-relationships with the recorded data were also analyzed by SPSS statistical software. Results of the study show that 83.8% of the informants recognize the utilization of wild plants either as foodstuff or as remedy, while only 16.2% was unaware of that. Both the knowledge and the utilization of plants significantly increased with the increasing age of the informants. However, there …

In Vitro Screening Of The Antibacterial Activity And Identification Of Bioactive Compounds From Plants Against Selected Vibrio Spp. Pathogens, Anjana Sharma, Virendra Kumar Patel

Turkish Journal of Biology

In vitro investigation of the vibriocidal activity of acetone extracts of Saraca indica Linn (Caesalpinaceae) and Datura stramonium Linn (Solanaceae), and aqueous extracts of Allium sativum Linn (Liliaceae) showed that they have antibacterial activity against multidrug-resistant human pathogens. Disc diffusion assay showed that there was significant concentration-dependent antibacterial activity against standard strains of Vibrio cholerae, Vibrio parahaemolyticus, and 12 multidrug-resistant isolates of Vibrio cholerae non-O1. The crude plant extracts had zones of inhibition in the range of 7-27 mm against 1 or more test bacteria, with MIC ranging from 2.5 to 15 mg/ml. Acetone extracts of S. indica and D. …

Antioxidant And Antibacterial Activity Of Diospyros Ebenum Roxb. Leaf Extracts, Yogesh Baravalia, Mital Kaneria, Yogeshkumar Vaghasiya, Jigna Parekh, Sumitra Chanda

Turkish Journal of Biology

The therapeutic properties of plants, including antioxidant and antibacterial activity, have been investigated. In the present study the petroleum ether, ethyl acetate, methanol, and aqueous extracts of Diospyros ebenum Roxb. were evaluated for DPPH (2,2-diphenyl-1-picryl-hydrazyl) free radical scavenging (antioxidant) activity and antibacterial activity. Antibacterial activity was determined against Bacillus subtilis ATCC6633, Staphylococcus aureus ATCC29737, Pseudomonas aeruginosa ATCC27853, Salmonella typhimurium ATCC23564, and Enterobacter aerogenes ATCC13048 using the agar well diffusion method. Total phenolic and flavonoid content of these extracts was determined as the gallic acid and quercetin equivalent, respectively. Results show that the methanol extract was active against all 5 bacterial …

Antisalmonella Activity Of Selected Medicinal Plants, Chand Pasha, Shaik Sayeed, Sadath Ali, Ziaullah Khan

Turkish Journal of Biology

Antisalmonella activity of some important plants in the Ayurvedic system of traditional medicine used in India to treat enteric diseases was screened. The aqueous and methanol extracts of 47 medicinal plants were studied for their antibacterial activity against pathogenic Salmonella typhi, Salmonella paratyphi A, and Salmonella typhimurium. The in vitro antibacterial activity was performed by agar well diffusion method and the results are expressed as the average diameter of zone of inhibition of bacterial growth around the well. Of the herbal extracts tested, 33 plant extracts were found to have antibacterial activity against at least one of the salmonella strains …

Antibacterial Activity Of Seed Extracts Of Commercial And Wild Lathyrus Species, Noor Afshan Khan, Sadaf Quereshi, Akhilesh Pandey, Ashutosh Srivastava

Turkish Journal of Biology

Butanolic extract of seeds from 2 different Lathyrus species (Lathyrus ratan [commercial variety] and L. aphaca [wild variety]), were investigated for their in vitro antibacterial activity. The antibacterial activity against plant and human pathogenic bacteria was evaluated on the basis of inhibition zones (IZs) measured by disc diffusion method. The maximum inhibition was shown by L. ratan against the gram-positive bacterium Staphylococcus aureus. L. aphaca seeds also showed inhibition but were inactive against Klebsiella pneumoniae. L. ratan extract was more active than L. aphaca. The minimum inhibitory concentration (MIC) and minimum bactericidal concentration (MBC) values for both the seeds (in …

The Toxicity And Teratogenicity Of Gibberellic Acid (Ga3) Based On The Frog Embryo Teratogenesis Assay-Xenopus (Fetax), Ayper Boğa, Seçi̇l Bi̇nokay, Yaşar Sertdemi̇r

Turkish Journal of Biology

This study investigated the developmental toxicity of a plant growth regulator (a type of pesticide) using the frog embryo teratogenesis assay-Xenopus (FETAX). Xenopus laevis embryos were exposed to 11 different concentrations of gibberellic acid (GA_3), from stage 8 to 11, for 96 h under static renewal test conditions. The median lethal concentration (LC_{50}), malformation (EC_{50}), non-observed adverse effect concentration (NOAEC), and lowest observed adverse effect concentration (LOAEC) were calculated. The corresponding LC_{50} and EC_{50} values determined for GA3 exposure were 1117.5 mg/L and 658 mg/L, respectively. The TI (LC50/EC50) value calculated for GA_3 was 1.69. Different anomalies occurred in the …

Ecological Determinants Of Survival And Reproduction In The Spotted Hyena, Heather E. Watts

Biology Faculty Works

Large carnivores play a key role in the structuring and dynamics of many ecosystems, yet the factors influencing dynamics of carnivore populations themselves are often poorly understood. Spotted hyenas (Crocuta crocuta) are the most abundant large carnivores in many African ecosystems. We describe demographic patterns in a population of spotted hyenas observed continuously for 15.5 years, and assess the effects of per capita prey availability, interspecific competition, rainfall, anthropogenic disturbance, and disease on 2 key determinants of population dynamics: reproduction and survival. Annual reproduction, survival of juveniles (i.e., recruitment to adulthood), and mortality of adults varied among years of the …

A Redescription Of Three Species Of Monoecocestus (Cestoda: Anoplocephalidae) Including Monoecocestus Threlkeldi Based On New Material, Terry R. Haverkost, Scott Lyell Gardner

Scott L. Gardner Publications

Because we have new and detailed data on species in the genus, herein we redescribe both Monoecocestus macrobursatus and M. minor based on existing museum specimens. We also redescribe M. threlkeldi (Parra, 1952) using material collected in Bolivia. Based on the specimens representing M. thelkeldi, we affirm that Perutaenia Parra, 1953 should remain a junior synonym of Monoecocestus.

Blood Sampling Reduces Annual Survival In Cliff Swallows (Petrochelidon Pyrrhonota) -- La Toma De Muestras De Sangre Reduce La Supervivencia Anual En Petrochelidon Pyrrhonota, Charles R. Brown, Mary Bomberger Brown

School of Biological Sciences: Faculty Publications

Researchers commonly collect blood samples from wild birds, and most workers assume that blood sampling has no adverse effect on the birds’ survival. Few studies, however, have done controlled comparisons among bled and non-bled individuals and estimated survival using modern statistical methodology. We used a data set on Cliff Swallows (Petrochelidon pyrrhonota) that included 2,945 bled and 7,822 non-bled birds captured at the same times and sites in southwestern Nebraska from 1986 to 2006 to estimate annual survival and recapture probabilities of each group. Blood was collected with brachial venipuncture in amounts varying from 0.3% to 1.2% of …

An Algorithm For Identifying Novel Targets Of Transcription Factor Families: Application To Hypoxia-Inducible Factor 1 Targets, Yue Jiang, Bojan Cukic, Donald A. Adjeroh, Heath D. Skinner, Jie Lin, Qingxi J. Shen, Bing-Hua Jiang

Electrical & Computer Engineering Faculty Research

Efficient and effective analysis of the growing genomic databases requires the development of adequate computational tools. We introduce a fast method based on the suffix tree data structure for predicting novel targets of hypoxia-inducible factor 1 (HIF-1) from huge genome databases. The suffix tree data structure has two powerful applications here: one is to extract unknown patterns from multiple strings/sequences in linear time; the other is to search multiple strings/sequences using multiple patterns in linear time. Using 15 known HIF-1 target gene sequences as a training set, we extracted 105 common patterns that all occur in the 15 training genes …

The Effect Of Exogenous Leptin On Murine Dendritic Cell Morphology And Function, Christine Delgado

Open Access Theses & Dissertations

Leptin is a pleiotropic hormone primarily secreted by white adipose tissue. Although originally found to regulate food intake and energy expenditure, it is now known to also significantly affect the immune system. In this study we assessed the effect of leptin on bone marrow derived dendritic cell (BM-DC) cytoskeletal structure and functionality. Our preliminary data demonstrates that the addition of physiological concentrations of exogenous leptin to BM-DC causes cytoskeletal rearrangement specifically that of actin as evidenced by increased number of llamelopodia/dendrites and increased staining for actin within the llamelopodia/dendrite region. This suggests that leptin is a necessary component of DC …

The Impact Of Repeated Rounds Of Mass Drug Administration With Diethylcarbamazine Plus Albendazole On Bancroftian Filariasis In Papua New Guinea, Gary J. Weil, Will Kastens, Melinda Susapu, Sandra J. Laney, Steven A. Williams, Christopher L. King, James W. Kazura, Moses J. Bockarie

Biological Sciences: Faculty Publications

Background: This study employed various monitoring methods to assess the impact of repeated rounds of mass drug administration (MDA) on bancroftian filariasis in Papua New Guinea, which has the largest filariasis problem in the Pacific region.

Methodology/Principal Findings: Residents of rural villages near Madang were studied prior to and one year after each of three rounds of MDA with diethylcarbamazine plus albendazole administered per World Health Organization (WHO) guidelines. The mean MDA compliance rate was 72.9%. Three rounds of MDA decreased microfilaremia rates (Mf, 1 ml night blood by filter) from 18.6% pre-MDA to 1.3% after the third MDA (a …

An Analysis Of Illegal Bushmeat Availability In Local Restaurants Located In Voi, Kenya, Bridget A. Sutton

Masters Theses & Specialist Projects

The illegal bushmeat harvest has been identified as a reason for declining wildlife populations throughout much of Africa. For many years the trade was thought to exist primarily in Western Africa. The illegal use of bushmeat in Eastern Africa, including Kenya, went undocumented and unstudied. In 2004, the Born Free Foundation published a study which claimed illegal sale of wild game was substantial in butcheries throughout Nairobi, Kenya. In an effort to determine other markets of the commercial trade, the goal of this study was to analyze local restaurants in Voi, Kenya for illegal bushmeat sale. The town of Voi …

Recombination-Based In Vivo Expression Technology Identifies Helicobacter Pylori Genes Important For Host Colonization, Andrea Castillo, Andrew J. Woodruff, Lynn E. Connolly, William E. Sause, Karen M. Ottemann

Biology Faculty Publications

Here we undertook to identify colonization and gastric disease-promoting factors of the human gastric pathogen Helicobacter pylori as genes that were induced in response to the stomach environment. Using recombination-based in vivo expression technology (RIVET), we identified six promoters induced in the host compared to laboratory conditions. Three of these promoters, designated Pivi10, Pivi66, and Pivi77, regulate genes that H. pylori may use to interact with other microbes or the host. Pivi10 likely regulates the mobA, mobB, and mobD genes, which have potential roles in horizontal gene transfer through plasmid mobilization. Pivi66 occurs in the cytotoxin-associated gene pathogenicity island, a …

Characterization Of The Ap-1 And Nf-Kappa B Transcription Factors In The U-87 Mg Astrocytoma Cell Line, Denise L. Smith

Dissertations

Growth factors, signaling molecules and transcription factors are frequently mutated in cancer and platelet-derived growth factor (PDGF) has been shown to be over-expressed in most gliomas. In the astrocytoma cell line U-87 MG, the over-expression of PDGF has been shown to lead to over-expression of transcription factors activator-protein-1 (AP-1) and nuclear factor-kappa B (NF-κB), and it is believed that the individual subunits of AP-1 (c-Jun, JunB, JunD, c-Fos, FosB, Fra-1, and Fra-2) and NF-κB (c-Rel, p50, p52, p65, and RelB) play different roles in proliferation, survival and differentiation in the U-87 MG cell line.

To assess these different roles, transient …

The Role Of Msa In The Global Regulation Of Virulence In Staphylococcus Aureus, Vijayaraj Nagarajan

Dissertations

Staphylococcus aureus is an important pathogen causing life threatening diseases in humans. Previously we showed that msa modulates the activity of sarA (Staphylococcal accessory regulator), which is one of a major global regulator of virulence in S. aureus. The objective of this study is to characterize the role of msa (Modulator of SarA) in the global regulation of virulence in S. aureus. Structure and function predictions were done using several computational tools and approaches to understand the nature of msa. A novel S. aureus microarray meta-database (SAMMD) was designed and developed to compare and contrast other transcriptomes with msa transcriptome. …

Ph-Induced Activation Of Arenavirus Membrane Fusion Is Antagonized By Small-Molecule Inhibitors, Joanne York, Dongcheng Dai, Sean M. Amberg, Jack H. Nunberg

Biological Sciences Faculty Publications

The arenavirus envelope glycoprotein (GPC) mediates viral entry through pH-induced membrane fusion in the endosome. This crucial process in the viral life cycle can be specifically inhibited in the New World arenaviruses by the small-molecule compound ST-294. Here, we show that ST-294 interferes with GPC-mediated membrane fusion by targeting the interaction of the G2 fusion subunit with the stable signal peptide (SSP). We demonstrate that amino acid substitutions at lysine-33 of the Junin virus SSP confer resistance to ST-294 and engender de novo sensitivity to ST-161, a chemically distinct inhibitor of the Old World Lassa fever virus. These compounds, as …

Transcriptional Response Of Mexican Axolotls To Ambystoma Tigrinum Virus (Atv) Infection, Jennifer D. Cotter, Andrew Storfer, Robert B. Page, Christopher K. Beachy, S. Randal Voss

Biology Faculty Publications

Background

Very little is known about the immunological responses of amphibians to pathogens that are causing global population declines. We used a custom microarray gene chip to characterize gene expression responses of axolotls (Ambystoma mexicanum) to an emerging viral pathogen, Ambystoma tigrinum virus (ATV).

Result

At 0, 24, 72, and 144 hours post-infection, spleen and lung samples were removed for estimation of host mRNA abundance and viral load. A total of 158 up-regulated and 105 down-regulated genes were identified across all time points using statistical and fold level criteria. The presumptive functions of these genes suggest a robust …

Transcriptional Response Of Mexican Axolotls To Ambystoma Tigrinum Virus (Atv) Infection, Jennifer D. Cotter, Andrew Storfer, Robert B. Page, Christopher K. Beachy, S. Randal Voss

Biology Faculty Publications

BACKGROUND: Very little is known about the immunological responses of amphibians to pathogens that are causing global population declines. We used a custom microarray gene chip to characterize gene expression responses of axolotls (Ambystoma mexicanum) to an emerging viral pathogen, Ambystoma tigrinum virus (ATV).

RESULT: At 0, 24, 72, and 144 hours post-infection, spleen and lung samples were removed for estimation of host mRNA abundance and viral load. A total of 158 up-regulated and 105 down-regulated genes were identified across all time points using statistical and fold level criteria. The presumptive functions of these genes suggest a robust innate immune …

Causes Of Mortality Of Wild Birds Submitted To The Charles Darwin Research Station, Santa Cruz, Galápagos, Ecuador From 2002-2004, Patricia Parker, Nicole Gottdenker, Timothy Walsh, Gustavo Jiménez-Uzcátegui, Franklin Betancourt, Marilyn Cruz, Catherine Soos, R. Miller

Biology Department Faculty Works

Necropsy findings were reviewed from wild birds submitted to the Charles Darwin Research Station, Santa Cruz Island, Galápagos Archipelago between 2004 and 2006. One hundred and ninety cases from 27 different species were submitted, and 178 of these cases were evaluated grossly or histologically. Trauma and trauma-related deaths (n=141) dominated necropsy submissions. Infectious causes of avian mortality included myiasis due to Philornis sp. (n=6), avian pox (n=1), and schistosomosis (n=1).

Determinants Of Success In National Programs To Eliminate Lymphatic Filariasis: A Perspective Identifying Essential Elements And Research Needs, Dominique Kyelem, Gautam Biswas, Moses J. Bockarie, Mark Bradley, Maged El-Setouhy, Peter U. Fischer, Ralph H. Henderson, James W. Kazura, Patrick J. Lammie, Sammy M. Njenga, Eric A. Ottesen, Kapa Ramaiah, Frank O. Richardson, Gary J. Weil, Steven A. Williams

Biological Sciences: Faculty Publications

The Global Programme to Eliminate Lymphatic Filariasis (GPELF) was launched in 2000. To understand why some national programs have been more successful than others, a panel of individuals with expertise in LF elimination efforts met to assess available data from programs in 8 countries. The goal was to identify: 1) the factors determining success for national LF elimination programs (defined as the rapid, sustained reduction in microfilaremia/ antigenemia after repeated mass drug administration [MDA]); 2) the priorities for operational research to enhance LF elimination efforts.

Of more than 40 factors identified, the most prominent were 1) initial level of LF …

To Love Your Neighbor: A Christian Perspective On The Study Of Microbiology And Immunology, Joy Doan

Faith Learning Integration Papers

I have been blessed with enough of a sense of adventure to have experienced the awe-inspiring beauty of a rain forest at night, the top of Half Dome at Yosemite National Park, the sheer cliffs and rushing waters of the Narrows at Zion National Park, Plateau Point—which seems suspended in the Grand Canyon, and the top of a 14,000-foot peak in the Rocky Mountains of Colorado. These are the types of places about which one of the characters in Robert Pirsig’s Zen and the Art of Motorcycle Maintenance observes, “This is the hardest stuff in the world to photograph. You …

Toxic Introns And Parasitic Intein In Coxiella Burnetii: Legacies Of A Promiscuous Past, Rahul Raghavan, Linda D. Hicks, Michael F. Minnick

Biological Sciences Faculty Publications

The genome of the obligate intracellular pathogen Coxiella burnetii contains a large number of selfish genetic elements, including two group I introns (Cbu.L1917 and Cbu.L1951) and an intervening sequence that interrupts the 23S rRNA gene, an intein (Cbu.DnaB) within dnaB and 29 insertion sequences. Here, we describe the ability of the intron-encoded RNAs (ribozymes) to retard bacterial growth rate (toxicity) and examine the functionality and phylogenetic history of Cbu.DnaB. When expressed in Escherichia coli, both introns repressed growth, with Cbu.L1917 being more inhibitory. Both ribozymes were found to associate with ribosomes of Coxiella and E. coli. In addition, ribozymes significantly …

Soluble Factors From Plasmodium Falciparum-Infected Erythrocytes Induce Apoptosis In Human Brain Vascular Endothelial And Neuroglia Cells, Winston Anderson

Department of Biology Faculty Publications

The severity of malaria is multi-factorial. It is associated with parasite-induced alteration in pro-inflammatory and anti-inflammatory cytokine and chemokine levels in host serum and cerebrospinal fluid. It is also associated with sequestration and cytoadherence of parasitized erythrocytes (pRBCs) in post-capillary venules and blood-brain barrier (BBB) dysfunction. The role of these factors in development of vascular injury and tissue damage in malaria patients is unclear. While some studies indicate a requirement for pRBC adhesion to vascular endothelial cells (ECs) in brain capillaries to induce apoptosis and BBB damage, others show no role of apoptosis resulting from adhesion of pRBC to EC. …

Trypanosoma Cruzi In Wild Raccoons And Opossums From Kentucky, Brian Chad Groce

Masters Theses & Specialist Projects

Only 6 autochthonous cases of human Chagas disease have been documented in the U.S.A., however, as many as 5% of immigrants from Latin America may be infected with the etiologic agent, Trypanosoma cruzi. The parasite has been isolated from a variety of wild mammals, particularly in the southeastern region of the U.S.A. The goal of our study was to determine if the sylvatic cycle of T. cruzi infection occurs in Kentucky, and, if present, to assess the prevalence of infection in Warren and Barren counties. Raccoons and opossums were live-trapped between June and December, 2007. Animals were anesthetized with …