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The Utilization Of Morphological And Genetic Diagnostic Techniques For The Description Of Trematode Species Collected From Waterbirds From Lake Winnibigoshish, Minnesota, Usa, Tyler Joseph Achatz

All Graduate Theses, Dissertations, and Other Capstone Projects

Historically, morphological techniques for species identification were the leading diagnostic methodology, however, the increased usage of genetic techniques has led to a decrease in reports of morphometrics. The decrease in morphological reports increases the chance of missing diagnostic morphometrics. The three studies described herein used morphological and genetic diagnostic methods to identify trematodes from five families in order to improve genetic and morphological information for trematode species identification.

The first study identified ten species of trematodes from intestines of waterbirds previously collected from Lake Winnibigoshish, Minnesota. Nine of the species were sequenced for 28S ribosomal DNA (rDNA). Two species were …

Analyzing The Safety And Efficacy Of Fecal Microbiota Transplantations For Inflammatory Bowel Disease Using Clostridium Difficile Infection As A Reference, Cassie Chan

Scripps Senior Theses

Fecal microbiota transplantation (FMT) is the process by which fecal suspension from a healthy individual is transferred into the gastrointestinal tract of another individual in an attempt to cure certain diseases. This transplantation process has been accredited as being a potential remedy for a growing number of diseases that have been associated with gut microbial imbalances. Interest in FMT has largely been driven by the science community’s increasing interest in the gut microbiome and its role in potentially regulating a multitude of different functions and processes within the human body. One disease that has been found to respond exceptionally well …

Impact Of Vector Range Expansion On Pathogen Transmission Dynamics Of Lyme Disease In Southwestern Virginia, Bishan Bhattarai

Honors Theses

Blacklegged ticks, Ixodes scapularis is the primary vector of Lyme disease in eastern United States. Borrelia Burgdorfei, the etiological agent of Lyme disease is transferred by ticks of Ixodes species. In recent years, its congener, Ixodes affinis has been expanding its range northwards from its southern population. We were interested in studying how the introduction of this new vector affected the interaction between the pathogen genotype and the host. We hypothesized that differential host use by I. affinis and I. scapularis would partly explain observed differences in B. burgdorferi infection prevalence and genotypic structure in southeastern Virginia. The result …

Risk Factors Associated With Severe Acute Respiratory Infections Cases, Ryan Gatdula Ortiguerra

Walden Dissertations and Doctoral Studies

The close proximity of the United States to the Mexican border poses a concern for communicable diseases because of the high flow of population movement. The purpose of this retrospective, quantitative study was to identify risks associated with respiratory diseases using an analysis of archived data from the Severe Acute Respiratory Illness (SARI) surveillance program. Based on the epidemiologic triangle theory, demographic and etiologic factors were analyzed to examine any associations with SARI in this population. Between 2010 and 2012, 798 subjects enrolled in this program, with 336 (42.1%) testing positive for respiratory pathogens. Chi square analysis determined that age …

The Development And Validation Of A One Tier Diagnostic Assessment To Test Premedical Students' Misconceptions About Traumatic Brain Injury, Md Hasan Iqbal

Browse all Theses and Dissertations

Since brain injury is common in the United States, it is important for health professionals and the public to have accurate knowledge about traumatic brain injury (TBI). Understanding misconceptions is important for health educators, nurses, and physicians, who work with TBI patients. While previous studies on misconceptions about TBI have been undertaken, these have not focused on pre-medical students, nor utilized validated assessments. The purpose of this study was to develop and validate a one tier diagnostic test with a confidence index to determine premedical students' misconceptions about TBI. Using the theoretical framework suggested by Treagust (1986, 1988, and 1995), …

Structural Basis For Recognition Of Human Enterovirus 71 By A Bivalent Broadly Neutralizing Monoclonal Antibody, Xiaohua Ye, Chen Fan, Zhiqiang Ku, Teng Zuo, Liangliang Kong, Chao Zhang, Jinping Shi, Qingwei Liu, Tan Chen, Yingyi Zhang, Wen Jiang, Linqi Zhang, Zhong Huang, Yao Cong

Department of Biological Sciences Faculty Publications

Enterovirus 71 (EV71) is the main pathogen responsible for hand, foot and mouth disease with severe neurological complications and even death in young children. We have recently identified a highly potent anti-EV71 neutralizing monoclonal antibody, termed D5. Here we investigated the structural basis for recognition of EV71 by the antibody D5. Four three-dimensional structures of EV71 particles in complex with IgG or Fab of D5 were reconstructed by cryo-electron microscopy (cryo-EM) single particle analysis all at subnanometer resolutions. The most critical EV71 mature virion-Fab structure was resolved to a resolution of 4.8 Å, which is rare in cryo-EM studies of …

Design For Mosquito Abundance, Diversity, And Phenology Sampling Within The National Ecological Observatory Network, David Hoekman, Y. P. Springer, C. M. Barker, R. Barrera, M. S. Blackmore, W. E. Bradshaw, D. H. Foley, H. S. Ginsberg, M. H. Hayden, C. M. Holzapfel, Steven A. Juliano, L. D. Kramer, S. L. Ladeau, T. P. Livdahl, C. G. Moore, R. S. Nasci, W. K. Reisen, H. M. Savage

Faculty Publications – Biological Sciences

The National Ecological Observatory Network (NEON) intends to monitor mosquito populations across its broad geographical range of sites because of their prevalence in food webs, sensitivity to abiotic factors, and relevance for human health. We describe the design of mosquito population sampling in the context of NEON's long-term continental scale monitoring program, emphasizing the sampling design schedule, priorities, and collection methods. Freely available NEON data and associated field and laboratory samples, will increase our understanding of how mosquito abundance, demography, diversity, and phenology are responding to land use and climate change.

Thermal Resilience Of Feeding Kinematics May Contribute To The Spread Of Invasive Fishes In Light Of Climate Change, Ralph Turingan, Tyler Sloan

Ocean Engineering and Marine Sciences Faculty Publications

As a consequence of global warming, tropical invasive species are expected to expand their range pole-ward, extending their negative impacts to previously undisturbed, high-latitude ecosystems. Investigating the physiological responses of invasive species to environmental temperature is important because the coupled effects of climate change and species invasion on ecosystems could be more alarming than the effects of each phenomenon independently. Especially in poikilotherms, the rate of motion in muscle-driven biomechanical systems is expected to double for every 10 °C increase in temperature. In this study, we address the question, “How does temperature affect the speed of jaw-movement during prey-capture in …

Taxonomic Review Of The Wingmite Genus Cameronieta (Acari: Spinturnicidae) On Neotropical Bats, With A New Species From Northeastern Brazil, Juliana C. Almeida, Donald D. Gettinger, Scott Lyell Gardner

Scott L. Gardner Publications

The ectoparasitic mite genus Cameronieta (Acari: Mesostigmata: Spinturnicidae) is endemic to the New World and associated exclusively with bats of the family Mormoopidae. The genus consists of 7 species, 4 broadly distributed through the Caribbean and mainland of North and South America, and 3 species limited to the Greater Antilles archipelago. We present a brief review of the taxonomic history, redefine the genus, and consider some questions that remain concerning the biology and systematics of the group. A new species, Cameronieta almaensis n. sp., is described from the wings of Pteronotus parnellii collected from the Serra das Almas Reserve, in …

Phylogeny And Biogeography Of Species Of Syphacia Seurat, 1916 (Nemata : Oxyurida : Oxyuridae) From The Australian Bioregion, Haylee J. Weaver, Scott Monks, Scott Gardner

Scott L. Gardner Publications

Pinworm nematodes of the genus Syphacia (Nemata : Oxyurida : Oxyuridae) have a global distribution, and infect the caecum of rodents. Within the Australian Bioregion, 17 species of Syphacia infect a range of rodent hosts. Pinworms are traditionally thought to have coevolutionary relationships with their hosts, but the evolution and dispersal of Australian rodents and their helminths remains unclear. This combination of factors allowed us to investigate the likely relationships of Australian Syphacia species based on phylogenetic analysis, overlaid with the ecology and relationships of host species. We conducted a phylogenetic analysis using morphological characters of the species of Syphacia …

Candida Albicans Isw2 Regulates Chlamydospore Suspensor Cell Formation And Virulence In Vivo In A Mouse Model Of Disseminated Candidiasis, Dhammika Navarathna, Ruvini U. Pathirana, Michail S. Lionakis, Kenneth W. Nickerson, David D. Roberts

School of Biological Sciences: Faculty Publications

Formation of chlamydospores by Candida albicans was an established medical diagnostic test to confirm candidiasis before the molecular era. However, the functional role and pathological relevance of this in vitro morphological transition to pathogenesis in vivo remain unclear. We compared the physical properties of in vitro-induced chlamydospores with those of large C. albicans cells purified by density gradient centrifugation from Candida infected mouse kidneys. The morphological and physical properties of these cells in kidneys of mice infected intravenously with wild type C. albicans confirmed that chlamydospores can form in infected kidneys. A previously reported chlamydospore-null Δisw2/ …

Tick Genome Assembled: New Opportunities For Research On Tick-Host-Pathogen Interactions, Jose De La Fuente, Robert M. Waterhouse, Daniel E. Sonenshine, R. Michael Roe, Jose M. Ribeiro, David B. Sattelle, Catherine A. Hill

Biological Sciences Faculty Publications

As tick-borne diseases are on the rise, an international effort resulted in the sequence and assembly of the first genome of a tick vector. This result promotes research on comparative, functional and evolutionary genomics and the study of tick-host-pathogen interactions to improve human, animal and ecosystem health on a global scale.

Characterization Of The Interaction Between Basigin And The Pattern Recognition Receptor Tlr4, Josephine Michelle Brown

UNF Graduate Theses and Dissertations

Toll-like receptors (TLRs) are a major group of pattern recognition receptors expressed on the surface of immune cells that recognize molecular patterns associated with all classes of pathogenic microorganisms. TLR4 recognizes the lipopolysaccharide component of Gram-negative bacterial cell walls and is the only TLR known to induce signaling through both the MyD88 and TRIF pathways. Basigin, a ubiquitous cell adhesion molecule, is a member of the immunoglobulin superfamily that has the ability to influence cell signaling mediated by the MyD88 and TRIF pathways, the same signaling pathways induced by the TLR4 receptor protein. Analysis of the Basigin protein sequence indicates …

Natural History And Conservation Of Bolitoglossine Salamanders In Central Panama, Leslie Caren Brinkman

Graduate Theses/Dissertations

I conducted a mark-recapture study to assess the natural history of a Neotropical salamander community in three discrete 4–6 week sampling periods at Chorro Las Yayas, a protected natural area of about 8000 m2 in central Panama, during an extended drought. I captured 87 Bolitoglossa biseriata, 17 Oedipina complex, and 15 O. parvipes. Bolitoglossa biseriata, had a mean mass of 0.8 ± 0.4 g with a mean snout-vent length (SVL) of 31.45 ± 5.30 mm. Bolitoglossa biseriata was active throughout the night, and its detection rate varied with season, air temperature, and amount of precipitation in the previous 24 h. …

Determining The Role Of Poly [Adp-Ribose] Polymerase 1 (Parp-1) In Retroviral Infection, Luis Valdes Rodriguez

Open Access Theses & Dissertations

Possible links between PARP-1 and HIV-1 have been previously reported but the role of this protein during viral infection has remained elusive. Based on the high evolutionary conservation of PARP-1, from Drosophila to humans, we have been able to counteract the difficulties related with the functional redundancy manifested in the PARP family by studying the influence of PARP-1 on the expression of an endogenous retrovirus using the chicken B lymphoblastoid cell line DT40, this cell line exhibits low PARP-1 functional redundancy and is viable after PARP-1 knockout. We have determined that the transcription level of the endogenous retrovirus RAV-1 is …

Phylogeography Of The Natal Puddle Frog Phrynobatrachus Natalensis (Anura: Phrynobatrachidae) In Sub-Saharan Africa, Joshua Adan Lara

Open Access Theses & Dissertations

The Family Phrynobatrachidae (Laurent, 1941) has one genus (Phrynobatrachus, Günther, 1862) containing 89 species. Commonly known as puddle frogs, they comprise one of the most species rich sub-Saharan amphibian groups. The objective of this study was to investigate P. natalensis from the Albertine Rift (AR) with systematic and phylogeographic methods. One mitochondrial DNA gene (16S = 555 base pairs [bp]) and one nuclear gene (RAG1 = 774 bp) were analyzed for 61 representatives of P. natalensis. Nine cryptic lineages were identified from Angola, Burundi, Côte d’Ivoire, Democratic Republic of the Congo, Ethiopia, Ghana, Mozambique, Namibia, Tanzania, Rwanda, and Uganda. Several …

Elucidating The Molecular Mechanism Of Action By Which Rs1-208b Induces Apoptosis In Hematological Cancers, Ruben Israel Calderon

Open Access Theses & Dissertations

The 26S proteasome has been successfully targeted to treat multiple myeloma. However, the effect can sometimes be reversed as cells acquire resistance to chemotherapy. Recently, combining proteasome inhibitors with indirect proteasome inhibitors has been proposed in order to delay and even reverse resistance. Small molecules derived from 4-piperidinone that maintain an unsaturated β-carbonyl group are thought to interact with the thiol group of catalytically active cysteine residues in deubiquitinases that associate with the 26S proteasome, effectively inhibiting the proteasome.

RS1-208b was selected following a high-throughput screening of a small library of 4-piperidinone derived curcumin structural analogs due to its selectivity …

Resurgence Of Acropora Corals On Mid Shelf Patch Reefs, Southwater Caye Marine Reserve, Central Belize, Jillian J. Keefer

Undergraduate Honors Thesis Projects

Acropora cervicornis (staghorn) and Acropora palmata (elkhorn) are ecologically important corals that grow quickly and provide topography and refuges for fish and invertebrates. Historically, Acropora was the most abundant coral in shallow patch reef zones in the Caribbean. During the 1980s, white band disease eliminated most Acropora causing a loss in rugosity and an increase of macroalgae on many reefs. Although Acropora remains rare throughout most of the Caribbean, this study documents its partial comeback and possible limiting factors in Southwater Caye Marine Reserve (SWCMR), Central Belize. Patch reefs in the reserve averaged 19% live coral cover with A. palmata …

Resolution Of Inflammation Rescues Axon Initial Segment Disruption, Nicholas M. George

Theses and Dissertations

Axonal domains are required for proper neuron function. These domains are unstable and degenerate concurrent with the inflammation in multiple sclerosis (MS) and the inflammatory disease models experimental autoimmune encephalomyelitis (EAE) and lipopolysaccharide (LPS) induced inflammation. Previous studies from our laboratory have shown that the axon initial segment (AIS) is maintained independently of the presence of myelin, but that AIS disruption is seen in MS as well as EAE and LPS-mediated inflammation. AIS loss can be interrupted in the early stage of EAE using the anti-inflammatory drug Didox. However, the potential for Didox directed repair of the AIS in later …

Reduced Leukocyte Infiltration In Absence Of Eosinophils Correlates With Decreased Tissue Damage And Disease Susceptibility In Δdblgata Mice During Murine Neurocysticercosis, P. K. Mishra, Q. Li, L. E. Munoz, Chris A. Mares, E. G. Morris, J. M. Teale, A. E. Cardona

Biology Faculty Publications (Archived)

Neurocysticercosis (NCC) is one of the most common helminth parasitic diseases of the central nervous system (CNS) and the leading cause of acquired epilepsy worldwide. NCC is caused by the presence of the metacestode larvae of the tapeworm Taenia solium within brain tissues. NCC patients exhibit a long asymptomatic phase followed by a phase of symptoms including increased intra-cranial pressure and seizures. While the asymptomatic phase is attributed to the immunosuppressive capabilities of viable T. solium parasites, release of antigens by dying organisms induce strong immune responses and associated symptoms. Previous studies in T. solium-infected pigs have shown that the …

2015 Final Report: Status Of The Arizona Toad (Anaxyrus Microscaphus) In New Mexico, Mason J. Ryan, Ian M. Latella, Jacek Tomasz Giermakowski, Howard L. Snell

Biology Faculty & Staff Publications

In 2013, we initiated a field study to assess the status of the Arizona Toad (Anaxyrus microscaphus) in New Mexico. Herein we provide the results of three years (2013-2015) of range-wide population monitoring, a review of threat assessments, and several contributions to the basic ecology of the Arizona Toad in New Mexico. This work highlights the sensitivity of the species to abiotic factors and emphasizes the nature of annual population fluctuations in a variable environment. We provide analyses of environmental factors that influence toad reproductive behaviors, employ occupancy and detection modeling at breeding sites, and provide analyses of tadpole habitat …

A Comparison Of Gastrointestinal Bacterial Population Between Indoor Cats And Outdoor Cats, Farhana Binti Ikmal Hisham

Honors Theses

This study used fecal samples from four indoor cats and four indoor-outdoor cats in order to identify the microbial communities in the gut of cats. This information was then used to compare the microbial phyla between both groups for any differences. Total microbial DNA was isolated from each fecal sample, and the 16S rRNA gene was sequenced using Illumina MiSeq high throughput method. The sequences were identified using the bioinformatics program mothur. The results show that indoor cats had a more diverse microbial community as compared to outdoor cats. Indoor cat samples had 26% more microbial species, and eight more …

Demography And Disease Of The Rare Shrub Buckleya Distichophylla (Santalaceae) In Northeastern Tennessee, William Seth Ratliff

Undergraduate Honors Theses

Piratebush (Buckleya distichophylla (Nutt.) Torr.) is a rare, hemiparasitic shrub with the only extant populations in western North Carolina, northeastern Tennessee, and southwestern Virginia. The preferred natural hosts of piratebush, Carolina and eastern hemlocks, have seen sharp declines over the last decade due to the invasive hemlock woolly adelgid. Virginia pine, another important host of piratebush, is also susceptible to disease, specifically Cronartium appalachianum, a rust fungus for which piratebush is the secondary host. This study described and analyzed current demographic parameters of three Tennessee piratebush populations. Additionally, spatial patterns of disease and demographic characters were analyzed. These …

Plant Toxins Influence Diet Selection And Intestinal Parasites In A Specialist Herbivore, Marcella Rene Fremgen

Boise State University Theses and Dissertations

Herbivores select plants and patches that generally maximize nutrient intake and minimize intake of plant secondary metabolites (PSMs). Protein is important for growth, reproduction and maintenance, but maximizing intake of protein is often limited by concentrations of PSMs that are potentially toxic to herbivores and energetically expensive to process. However, the consequences of ingesting PSM are often dose-dependent. At high doses, PSMs generally have negative physiological effects and are avoided, but some PSMs can be therapeutic against parasites at low doses and could therefore be selected. We used Greater Sage-grouse (Centrocercus urophasianus, hereafter, sage-grouse) to test how PSMs influence …

Paratransgenic Control Of Pierce's Disease, Arinder K. Arora

Biology ETDs

Pierce's Disease (PD) is a deadly grapevine disease, which is caused by a Gram negative bacterium, Xylella fastidiosa and transmitted by leafhoppers commonly known as sharpshooters, including the glassy-winged sharpshooter (GWSS, Homalodisca vitripennis). We developed paratransgenic control of PD using a commensal bacterium Pantoea agglomerans E325. The GWSSs acquired enhanced green fluorescent (EGFP)-expressing P. agglomerans from an artificial feeding system and the bacteria persisted within the insect foregut for two weeks. P. agglomerans was selected as the paratransgenic control agent based on its persistence within the sharpshooter foregut, a niche also inhabited by X. fastidiosa. P. agglomerans lines secreting two …

Dynamics Of An Sir Model With Nonlinear Incidence And Treatment Rate, Balram Dubey, Preeti Dubey, Uma S. Dubey

Applications and Applied Mathematics: An International Journal (AAM)

In this paper, global dynamics of an SIR model are investigated in which the incidence rate is being considered as Beddington-DeAngelis type and the treatment rate as Holling type II (saturated). Analytical study of the model shows that the model has two equilibrium points (diseasefree equilibrium (DFE) and endemic equilibrium (EE)). The disease-free equilibrium (DFE) is locally asymptotically stable when reproduction number is less than one. Some conditions on the model parameters are obtained to show the existence as well as nonexistence of limit cycle. Some sufficient conditions for global stability of the endemic equilibrium using Lyapunov function are obtained. …

Examination Of The Chagas Disease Vector, Triatoma Gerstackeri, In The Lower Rio Grande Valley, Alfredo Flores

Theses and Dissertations

Chagas disease is caused by the protozoan parasite Trypanosoma cruzi, which is carried by an insect vector of the family Reduviidae, and of the subfamily Triatomina. The species Triatoma gerstaeckeri is identified as the primary vector of T. cruzi within the Rio Grande Valley. Species of Triatoma gerstaeckeri were trapped in La Sal del Rey National Refuge in 2012 and 2013.

Data indicates a seasonal dispersal pattern of activity for T. gerstaeckeri. Optimal time of capture was between 1-2 hours after sunset. Different methods were utilized to determine the best combination of lures. Results indicate that the UV-light alone is …

Environmental Impacts And Carry-Over Effects In Complex Life Cycles: The Role Of Different Life History Stages, Nnaemeka F. Ezeakacha

Dissertations

A challenge faced by organisms with complex life cycles is how environmental factors experienced at an earlier life stage affect the fitness at that stage or are carried over to subsequent life stages. I used container-inhabiting mosquitoes: Aedes albopictus, Aedes aegypti, Aedes triseriatus and Culex quinquefasciatus to study the interactions and performance of life history stages under specific environmental factors. I investigated the effects of egg-desiccation tolerance on egg viability and larval performance in the Aedes mosquitoes. I found increase in egg hatch rate with relative humidity and interaction between relative humidity and egg storage period. Larval performance …

Administration Of Panobinostat Is Associated With Increased Il-17a Mrna In The Intestinal Epithelium Of Hiv-1 Patients, Ane Bjerg Christensen, Anders Dige, Johan Vad-Nielsen, Christel R. Brinkmann, Mia Bendix, Lars Østergaard, Martin Tolstrup, Ole S. Søgaard, Thomas A. Rasmussen, Jens Randel Nyengaard, Jørgen Agnholt, Paul W. Denton

Biology Faculty Publications

Intestinal CD4+ T cell depletion is rapid and profound during early HIV-1 infection.This leads to a compromised mucosal barrier that prompts chronic systemic inflammation.The preferential loss of intestinal T helper 17 (Th17) cells in HIV-1 disease is a driver of the damage within the mucosal barrier and of disease progression.Thus, understanding the effects of new therapeutic strategies in the intestines has high priority. Histone deacetylase (HDAC) inhibitors (e.g., panobinostat) are actively under investigation as potential latency reversing agents in HIV eradication studies. These drugs have broad effects that go beyond reactivating virus, including modulation of immune pathways. We examined colonic …

Effectiveness Of Stevia Rebaudiana Whole Leaf Extract Against The Various Morphological Forms Of Borrelia Burgdorferi In Vitro, Priyanka Annabel Sugantham Theophilus, Maria J. Victoria, Kayla Socarras, Katherine R. Filush, Khusali Gupta, David F. Luecke, Eva Sapi

Biology and Environmental Science Faculty Publications

Lyme disease is a tick-borne multisystemic disease caused by Borrelia burgdorferi. Administering antibiotics is the primary treat-ment for this disease; however, relapse often occurs when antibiotic treatment is discontinued. The reason for relapse remains un-known, but recent studies suggested the possibilities of the presence of antibiotic resistant Borreliapersister cells and biofilms.In this study, we evaluated the effectiveness of whole leaf Stevia extract against B. burgdorferispirochetes, persisters, and bio-film forms in vitro. The susceptibility of the different forms was evaluated by various quantitative techniques in addition to differ-ent microscopy methods. The effectiveness of Stevia was compared to doxycycline, cefoperazone, daptomycin, and …