Digital Commons Network^™

Clinostomum Marginatum (Digenea: Clinostomidae) From Fishes Of Crooked Creek, Boone And Marion Counties, Arkansas, Chris T. Mcallister, Henry W. Robison

Journal of the Arkansas Academy of Science

Crooked Creek is a renowned trophy (blue ribbon) Smallmouth Bass (Micropterus dolomieu) fishing stream. This fish, however, has been previously reported to commonly harbor some of the highest population densities of the digenean trematode parasite, Clinostomum marginatum, otherwise known as “yellow grub”. The parasite infects the orobranchial cavity, gills, and peritoneal cavity of Smallmouth Bass. Historical studies on this fish over the last 3 decades or more from various sites on the creek have shown that M. dolomieu also have high mean abundances but fish from upstream sites had lower prevalence than those collected from downstream sites. …

Helminth Parasites Of The Golden Topminnow, Fundulus Chrysotus (Cyprinidontiformes: Fundulidae) From Desha County, Arkansas, Chris T. Mcallister, Thomas J. Fayton, Henry W. Robison, Stanley E. Trauth, Donald G. Cloutman

Journal of the Arkansas Academy of Science

During July 2019, 21 Golden Topminnows (Fundulus chrysotus) were collected from an oxbow lake in McGehee, Desha County, Arkansas, and examined for parasites. Found were 4 taxa of endoparasites, including 3 digeneans (Clinostomum marginatum, Homalometron sp., and Posthodiplostomum minimum) and a nematode (Spiroxys contortus). We document a new host record for S. contortus and the first report of parasites in F. chrysotus from the lower Mississippi River Drainage.

Development Of Methods To Improve Lactose Recovery From Permeate And Drying Characteristics Of Greek Acid Whey, Venkateswarlu Sunkesula

Electronic Theses and Dissertations

Growth of higher protein dairy products and ingredients such as cheese, Greek yogurt, whey protein concentrates, and milk protein concentrates is limited by the amount of co-product generated and the ability to process them into value added ingredients. Finding value for all the co-products will help dairy industry to meet the growing demand for dairy protein products and ingredients. Commercial scale evaluation of new technologies for improving lactose crystallization and drying ability of Greek yogurt acid whey will help dairy industry to better utilize different dairy co-products. Commercially, lactose is manufactured from concentrated permeate by cooling and separating α-lactose monohydrate …

Exploring The Properties Of Chitin For Promoting Tissue Engineering And Repair, M. Jahir Raihan

Electronic Theses and Dissertations

No abstract provided.

Novel Mechanism For Turning Performance In Bluefin Tuna, Abigail Downs

West Chester University Master’s Theses

Scombrid fishes can attain exceptional swimming speeds due to their thunniform, lift-based propulsion, large muscle mass, and fusiform body shape. A rigid body restricts maneuverability for aquatic organisms. To test if turning maneuvers by the rigid-bodied Pacific bluefin tuna (Thunnus orientalis) are constrained, captive animals were video recorded from above as the animals routinely swam around a large circular tank or during feeding bouts. The turning performance was classified into three different types of turns: 1) glide turn, where the tuna uses the caudal fin as a rudder to passively move through the turn, 2) powered turn, where …

Microbial Energy Storage And Antimicrobial Effects Of Metal Nanoparticles, Octavia Allen

West Chester University Master’s Theses

With the use of Microbial Electrolysis Cells (MECs) and anaerobic digester (AD) designs, wastewater treatment could be more effectively processed. Inoculation of anaerobic microorganisms, methanogens specifically, can help convert organic matter in wastewater metabolizing it to produce CH₄. Most MECs are stationary and are not actively mixed to promote expedited CH₄ production. The objective of this work was to design Wind-Actuated Vibrating Electrochemical (WAVE) digesters and utilize electrical current to increase CH₄ production rates generated by anaerobic microorganisms in MECs, optimizing efficiency of wastewater treatment. It was hypothesized WAVE mixed digesters will enhance conversion of wastewater …

Form And Function Of The California Sea Lion (Zalophus Californianus) Hindflippers: Control Surfaces For Subaqueous Maneuvers, Ariel Leahy

West Chester University Master’s Theses

The hindflippers of California sea lions (Zalophus californianus) have previously been overlooked as aquatic control surfaces. Although passively trailed in rectilinear swimming, the hindflippers are abducted into a delta-wing shape during aquatic maneuvers. As the anatomy of sea lion hindflippers had not previously been described, anatomical/morphological examinations were completed via scaled measurements and dissections. It was found that the tendons of Flexor Hallucis Longus and Flexor Digitorum Longus insert into the collagen matrix of the crenellations instead of onto bone and the tendons of Flexor Digitorum Brevis contain foramen through which the tendons of Flexor Digitorum Longus pass. …

Ecto- And Endoparasites Of The Texas Deermouse, Peromyscus Attwateri And Eastern Woodrat, Neotoma Floridana (Rodentia: Cricetidae) From Polk County, Arkansas, Chris T. Mcallister, Lance A, Durden, John A. Hnida, Henry W. Robison

Journal of the Arkansas Academy of Science

In Arkansas, the Texas deermouse (Peromyscus attwateri) occurs in the western part of the state where it is restricted to the uplands of the Interior Highlands. The eastern woodrat (Neotoma floridana) is found statewide but is less common in the Gulf Coastal Plain. Very little is known about the parasites of either rodent in Arkansas, especially helminths from P. attwateri at any locality within its range. Found in/on P. attwateri were a coccidian (Eimeria langbarteli), a tapeworm (Catenotaenia peromysci), a nematode (Syphacia peromysci), 2 ticks (Dermacenter variabilis and Ixodes …

Masters Of The Manipulator? A Species Description And Comparative Genomics Study Of Two New Hyperparasites Of The Zombie Ant Fungus, Brittany Lebert

Electronic Theses and Dissertations, 2020-2023

Fungal hyperparasites have been known to indirectly impact ecosystem composition and disease dynamics by modulating the population size and transmission of their parasite host. In the present study we formally describe two new hyperparasite species that infect the fungus Ophiocordyceps camponoti-floridani, which manipulates the behavior of the Florida carpenter ant. Phylogenetic analyses demonstrate that both fungal hyperparasites are new, distinct species. The unique morphology and phylogenetic placement of one of the species even supports its placement in a new genus, which we have named Niveomyces. Our field data suggests that both new species, Polycephalomyces oviedoensis and Niveomyces ophiocordycipitis, negatively impact …

Human Impact Overrides Bioclimatic Drivers Of Red Fox Home Range Size Globally, Michael Main, Robert Davis, David Blake, Harriet Mills, Tim Doherty

Research Datasets

Aim Identifying the variables that influence animal home range size is important for understanding the biological requirements of individuals and their social interactions. Given their often broad distributions, carnivores are model organisms for studying range-wide determinants of home range size. Here we test predictions about environmental determinants of home range size for one of the world’s most widely distributed carnivores, the red fox (Vulpes vulpes).

Location Global

Methods We compiled a database of 70 mean home range estimates from 62 studies and four continents, which we analysed according to site-based temperature, precipitation, environmental productivity and human influence …

Modelling Mycorrhizal Fungi Dispersal By The Mycophagous Swamp Wallaby (Wallabia Bicolor) [Dataset], Melissa Danks, Natalie Simpson, Todd F. Elliot, C.E. Timothy Paine, Karl Vernes

Research Datasets

Despite the importance of mammal-fungal interactions, tools to estimate the mammal-assisted dispersal distances of fungi are lacking. Many mammals actively consume fungal fruiting bodies, the spores of which remain viable after passage through their digestive tract. Many of these fungi form symbiotic relationships with trees and provide an array of other key ecosystem functions. We present a flexible, general model to predict the distance a mycophagous mammal would disperse fungal spores. We modelled the probability of spore dispersal by combining animal movement data from GPS-telemetry with data on spore gut-retention time. We test this model using an exemplar generalist mycophagist, …

Dam Effects On Freshwater Mussel Growth And Recruitment In A Midwestern Stream, Taylor Lyndon Fagin

Masters Theses

There have been many studies that examine the negative impact of dams on freshwater mussel populations. However, recent studies suggest that some dams may create more suitable growing conditions immediately below some dams. This study’s main objectives were to 1) document where faster growth of mussels is found in relation to the Charleston Dam, 2) determine if sites with faster growth have higher recruitment and 3) investigate which water quality variable(s) could be correlated with faster growth. Live Corbicula sp. were set in cages in multiple sites at varying distances from the dam and shells of two native mussel species …

Phenotypic Divergence In Two Sibling Species Of Shorebird: Common Snipe And Wilson’S Snipe (Charadriiformes: Scolopacidae), Tiago M. Rodrigues, Edward H. Miller, Sergei V. Drovetski, Robert M. Zink, Jon Fjeldså, David Gonçalves

School of Biological Sciences: Faculty Publications

Natural and social selection are among the main shapers of biological diversity but their relative importance in divergence remains understudied. Additionally, although neutral evolutionary processes may promote phenotypic divergence, their potential contribution in speciation is often overlooked in studies of comparative morphology. In this study, we investigated phenotypic differentiation in two allopatric shorebirds: the Palaearctic Common Snipe Gallinago gallinago and the Nearctic Wilson’s Snipe Gallinago delicata. Specimens of Common Snipe (n = 355 skins, n = 163 skeletons) and Wilson’s Snipe (n = 403 skins, n = 141 skeletons) in natural history collections were examined to quantify differences in skeletal …

A Discrete Age Structured Model Of Hantavirus In A Rodent Reservoir In Paraguay, Megan A. Rúa

Biological Sciences Faculty Publications

Many rodent-borne hantaviruses are zoonotic pathogens that can cause disease in humans through inhalation of aerosolized rodent excreta. To evaluate the prevalence of Jaborâ virus (JABV) over time within its rodent reservoir, Akodon montensis, we formulated a mathematical model with multiple rodent age classes and unique infection class progression features. We then parameterized the model with data collected from a survey of JABV harbored by Akodon montensis in the Mbaracayú Reserve in Paraguay. Our model incorporates three types of infection over the lifetime of the rodent as well as a recovered class. A new feature of the model allows transition …

Phylogenomics Of The Epigenetic Toolkit Reveals Punctate Retention Of Genes Across Eukaryotes, Agnes K.M. Weiner, Mario A. Cerón-Romero, Ying Yan, Laura A. Katz

Biological Sciences: Faculty Publications

Epigenetic processes in eukaryotes play important roles through regulation of gene expression, chromatin structure, and genome rearrangements. The roles of chromatin modification (e.g., DNA methylation and histone modification) and non-protein-coding RNAs have been well studied in animals and plants. With the exception of a few model organisms (e.g., Saccharomyces and Plasmodium), much less is known about epigenetic toolkits across the remainder of the eukaryotic tree of life. Even with limited data, previous work suggested the existence of an ancient epigenetic toolkit in the last eukaryotic common ancestor. We use PhyloToL, our taxon-rich phylogenomic pipeline, to detect homologs of epigenetic genes …

Dietary Fish Oil Supplement Induces Age-Specific Contractile And Proteomic Responses In Muscles Of Male Rats, David W. Russ, Kalina Dimova, Emily Morris, Marguerite Pacheco, Sean M. Garvey, Stylianos P. Scordilis

Biological Sciences: Faculty Publications

Background: Dietary fish oil (DFO) has been identified as a micronutrient supplement with the potential to improve musculoskeletal health in old age. Few data are available for effects of DFO on muscle contractility, despite the significant negative impact of muscle weakness on age-related health outcomes. Accordingly, the effects of a DFO intervention on the contractile function and proteomic profile of adult and aged in an animal model of aging were investigated.

Methods: This preliminary study evaluated 14 adult (8 months) and 12 aged (22 months) male, Sprague-Dawley rats consuming a DFO-supplemented diet or a control diet for 8 weeks (7 …

Analysis Of Genetic Structure And Pathogen Dynamics Of Ixodes Scapularis In Southwestern Virginia, Leemu Jackson

Undergraduate Honors Theses

Ixodes scapularis, or the blacklegged tick, is the primary vector of Borrelia burgdorferi. This pathogen is the causative agent of Lyme disease, the most common vector-transmitted disease in the United States. Although I. scapularis is distributed throughout the eastern U.S., Lyme disease is only considered endemic in the northeastern region of the country. Prior to 2007, Lyme disease was uncommon in Virginia, but since then cases of Lyme disease have increased dramatically with a hotspot forming in the Roanoke-Blacksburg area. The purpose of the current study was to determine whether B. burgdorferi prevalence and the genetic structure of I. …

Characterization Of The Putative Polysaccharide Synthase Cpsa And Its Effects On The Virulence Of The Human Pathogen Aspergillus Fumigatus, Binita Nepal

Graduate Research Theses & Dissertations

The fungus Aspergillus fumigatus is a ubiquitous opportunistic human pathogen capable of causing a life-threatening disease called invasive aspergillosis, or IA, with an associated 40–90% mortality rate in immunocompromised patients. Of the approximately 250 species known in the genus Aspergillus, A. fumigatus is responsible for up to 90% of IA infections. This study focuses on examining the role of the putative polysaccharide synthase cpsA gene in A. fumigatus virulence. Additionally, we evaluated its role in cellular processes that influence invasion and colonization of host tissue. Importantly, our results support that cpsA is indispensable for virulence in A. fumigatus infection of …

Model-Based Network Reconstruction From Cascade Dynamics, Katherine Irena Chwistek

Graduate Research Theses & Dissertations

Network representation provides a natural framework for the study of real world complex systems. From social networks and animal groups to interneuronal communications and power grid systems, complex patterns of interaction can be captured and modeled using networks in a simple mathematical form. In many cases, however, a faithful network representation of the system is not readily available. For this reason, network reconstruction has become a growing topic of interest in recent years, the goal of which is to discover the hidden interaction patterns among individuals by fitting input-output data from multiple experiments to candidate network topologies.

During a cascade, …

Fishes Of The Dakotas, Kathryn Schlafke

Electronic Theses and Dissertations

Biological reference materials play a critical role in studies of species biodiversity, biology, distribution, and historic diversity. Since the publications Fishes of North Dakota (Hankinson, 1929) and Fishes of South Dakota (Bailey and Allum, 1962), no new books have attempted to update the knowledge gained from the past decades of fish surveys and incorporate georeferenced collections at the state level. The last published book with the most complete accounts of fishes from North Dakota and South Dakota is the Distribution of Fishes in North and South Dakota Basins affected by the Garrison Diversion Unit (Owen et al. 1981) which includes …

Characterization Of A Conserved Transient Receptor Potential Channel Supporting Spermatogenesis In Planarian Flatworms, Haley Nicole Curry

Browse all Theses and Dissertations

The molecular processes underlying the control of external stimuli on development of the reproductive system remain to be understood. The Transient Receptor Potential superfamily of proteins (TRPs) consists of cation channels that respond to external stimuli and are abundant in the somatosensory as well as reproductive systems. Mammalian TRP-Melastatin 3 (TRPM3) channels are activated by heat and the neurosteroid pregnenolone. Here we characterize an ortholog of TRPM3 in the planarian flatworm Schmidtea mediterranea (Smed-TRPM3). Smed-TRPM3 was hypothesized to play a role in germline development due to enriched expression in the reproductive system of sexual planarians. In situ hybridization analysis revealed …

Variation In Available Habitat Impacts The Spatiotemporal Interactions Of A Great Lakes Carnivore Community, Mackenzie E. Rich

Browse all Theses and Dissertations

Interactions between carnivores play a crucial role in regulating lower trophic levels. In order to examine interspecific interactions among Great Lakes carnivores, I used occupancy models to examine habitat selection patterns and quantify interactions between species. I determined temporal patterns of activity for each species and quantified interspecific activity overlap using kernel density estimates. To generate these models and analyze the patterns displayed, I placed 25 cameras across 25 km2 of diverse northern Wisconsin forest. I extracted habitat data from the National Landcover Database using GIS to inform my occurrence models for each detected carnivore species. The only significant influence …

Utilizing Rhizospheric And Bacterial Endophytes For Use As Potential Bio-Fertilizers For Sustainable Agricultural Production, Vincent Peta

Electronic Theses and Dissertations

Brassica carinata crop production offers an exciting alternative approach to the energy crisis when looking at novel ways to power our motor vehicles. Bacterial endophytes, while residing in host-plant tissues, offer a wide array of plant growth promotion benefits such as nitrogen fixation to impart nitrogen (N) nutrition, phosphate (P) solubilization to make soil-bound phosphate more mobile in soil for plant uptake, can suppress pathogenic microbes such as fungus and produce plant growth hormones to offset stress incurred by the plant. Previous literature has shown that there is large interest in studying endophytes from economically important crops such as wheat, …

What's In My Histological Dyes Anyway?, Ashley Post

Undergraduate Honors Thesis Collection

There are many different dyes that are used for biological research, but not much is commonly known about the origins of the dyes or how they are synthesized. Our dyes of interest were Coomassie Blue G and Rhodamine B. Coomassie Blue G is a blue colored dye used mainly for SDS-PAGE (gel electrophoresis) in biological research. Rhodamine B is used for its ability to fluoresce under ultraviolet light. Both of these dyes have been used for research purposes for many years despite researchers who use the dyes not having little background knowledge regarding the purity of the manufactured dyes. We …

Characterization Of Heavy Metal Bioremediation Pathways In Local Moss Species, Zachary Hanquier

Undergraduate Honors Thesis Collection

Heavy metals are found in natural water sources and are toxic to plants and animals. Metal removal remains a goal of environmental protection; one promising approach is to use plants that have been genetically modified to better remove metals from water. A known metabolic pathway to neutralize metals uses the Phytochelatin Synthase (PCS) enzyme to catalyze the production of phytochelatins. Our research characterizes the potential of Indiana moss species for heavy metal bioremediation as foundational research for future genetic modification. Mosses grow well in water and absorb metals through their entire surface area, and using locally collected moss species will …

Evolutionary Ecology Of The Native Johnny Darter (Etheostoma Nigrum) And The Invasive Round Goby (Neogobius Melanostomus): A Genomic Perspective, Abby Joyce Wicks

Wayne State University Dissertations

Round goby (Neogobius melanostomus) is an invasive fish present in all five Great Lakes and is becoming increasingly common in their tributaries. Johnny darter (Etheostoma nigrum) is a native species that often coexists with round goby. Here, I use traditional population genetic methods and genomic tools to explore the evolutionary ecology of these species. First, historic factors are addressed as a source of variation in study populations by characterizing patterns of mitochondrial DNA variation throughout Lower Michigan. Round goby populations were largely homogenous and exhibited no evidence of overarching historical genetic structure, consistent with the recent invasion and rapid expansion …

Synergies Among Environmental Science Research And Monitoring Networks: A Research Agenda, J. A. Jones, P. M. Groffman, J. Blair, F. W. Davis, H. Dugan, E. E. Euskirchen, S. D. Frey, T. K. Harms, E. Hinckley, M. Kosmala, S. Loberg, S. Malone, Sydne Record, A. V. Rocha, B. L. Ruddell, E. H. Stanley, C. Sturtevant, A. Thorpe, T. White., W. R. Wieder, L. Zhai, K. Zhu

Biology Faculty Research and Scholarship

Many research and monitoring networks in recent decades have provided publicly available data documenting environmental and ecological change, but little is known about the status of efforts to synthesize this information across networks. We convened a working group to assess ongoing and potential cross-network synthesis research and outline opportunities and challenges for the future, focusing on the US-based research network (the US Long-Term Ecological Research network, LTER) and monitoring network (the National Ecological Observatory Network, NEON). LTER-NEON cross-network research synergies arise from the potentials for LTER measurements, experiments, models, and observational studies to provide context and mechanisms for interpreting NEON …

Range Limitation Of The Peaks Of Otter Salamander (Plethodon Hubrichti) Due To Competition With The Eastern Red-Backed Salamander (Plethodon Cinereus) In Sympatry, Timothy R. Brophy, Norman G. Reichenbach

Faculty Publications and Presentations

The Peaks of Otter salamander, Plethodon hubrichti, is a montane species found at altitudes above 442 m within a 117 km2 area of the Blue Ridge Mountains in central Virginia, USA. In areas where this species is sympatric with the eastern red-backed salamander (Plethodon cinereus) it seemed likely that P. hubrichti populations were either depressed or eliminated. The habitability of areas beyond the current range boundaries for P. hubrichti is supported by several disjunct populations in areas sympatric with P. cinereus. From 2009 to 2012 we tested whether P. hubrichti was negatively impacted by competition with P. cinereus by removing …

Characterizing The Diverse Cells That Associate With The Developing Commissures Of The Zebrafish Forebrain, Jake Schnabl, M.P.H Litz, Caitlin Schneider, N. Penkofflidbeck, Sarah Bashiruddin, M. S. Schwartz, Kristin Alligood, Michael Barresi

Zebrafish Forebrain Cellular Characterization

During embryonic development of bilateral organisms, neurons send axons across the midline at specific points to connect the two halves of the nervous system with a commissure. Little is known about the cells at the midline that facilitate this tightly regulated process. We exploit the con served process of vertebrate embryonic development in the zebrafish model system to elucidate the identity of cells at the midline that may facilitate postoptic (POC) and anterior commissure (AC) development. We have discovered that three differentgfap+ astroglial cell morphologies persist in contact with pathfinding axons throughout commissure formation. Similarly, olig2+ progenitor cells occupy delineated …

Model Prediction Of A Kunitz-Type Trypsin Inhibitor Protein From Seeds Of Acacia Nilotica L. With Strong Antimicrobial And Insecticidal Activity, Sohaib Mehmood, Muhammad Imran, Arslan Ali, Aisha Munawar, Binish Khaliq, Farzeen Anwar, Qamar Saeed, Friedrich Buck, Saber Hussain, Ahsan Saeed, Muhammad Yasin Ashraf, Ahmed Akrem

Turkish Journal of Biology

A Kunitz-type trypsin inhibitor protein has been purified and characterized from seeds of Acacia nilotica L. LC-MS/MS analysis of Acacia nilotica trypsin inhibitor (AnTI) provided the N-terminal fragment of 11 amino acids which yielded 100% identity with already reported Kunitz-type trypsin inhibitor protein of Acacia confusa (AcTI) in UniProtKB database search. SDS-PAGE showed a single band of ~21 kDa under nonreduced condition and appearance of a daughter band (17 kDa) in the presence of ß-mercaptoethanol indicating the presence of interchain disulfide linkage typical for Kunitz-type trypsin inhibitors. AnTI was purified from seed extract by using a combination of anion exchange …