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Elbow Motion In Walking Alligators, Thao Pham, Luciana Emmanuelli, Megan Rowlings, Nina Pitre

Biology Student Scholarship

Thao Pham ’21, Biology
Megan Rowlings ’21, Biology
Nina Pitre ’22, Biology
Luciana Emmanuelli ’23, Biology
Faculty Mentor: Dr. David Baier, Biology

Crocodylia regularly use a “high-walk” during terrestrial locomotion unlike other non-mammals, thus drawing interest from both biomechanical and evolutionary research communities. Here, we employ the highly accurate XROMM (X-ray Reconstruction of Moving Morphology) method to measure joint motion between the three forelimb bones (humerus, ulna, and radius) of alligators performing high-walks on a treadmill. This method literally “re-animates” bone motion by combining bi-planar X-ray video with digital bone models from CT scans in the animation program Maya (Autodesk).

The Effect Of Color Morph On Behavior Interactions In Red-Backed Salamanders (Plethodon Cinereus), Taylor M. Aliferis

Honors Theses

Studies in behavioral ecology provide critical information regarding a species’ territoriality, predator-prey interactions, and reproduction. Red-backed salamanders (Plethodon cinereus) are a polymorphic terrestrial amphibian whose behavioral interactions have long been studied to provide insights on the processes that structure salamander populations, which are often cryptic and difficult to study. However, research regarding the effect of coloration on these interactions is more limited, but potentially extremely important for studies of population dynamics and speciation in terrestrial salamanders. In this study, aggressive and submissive behaviors of adult male red-backed salamanders in five different color morph treatment pairings were observed to …

Comparable Response Of Wild Rodent Gut Microbiome To Anthropogenic Habitat Contamination, Anton Lavrinienko, Ann Hämäläinen, Rasmus Hindstrom, Eugene Tukalenko, Zbyszek Boratynski, Kati Kivisaari, Timothy Mousseau, Phillip C. Watts, Tapio Mappes

Faculty Publications

Species identity is thought to dominate over environment in shaping wild rodent gut microbiota, but it remains unknown whether the responses of host gut microbiota to shared anthropogenic habitat impacts are species-specific or if the general gut microbiota response is similar across host species. Here, we compare the influence of exposure to radionuclide contamination on the gut microbiota of four wild mouse species: Apodemus flavicollis, A. sylvaticus, A. speciosus and A. argenteus. Building on the evidence that radiation impacts bank vole (Myodes glareolus) gut microbiota, we hypothesized that radiation exposure has a general impact on rodent gut microbiota. Because we …

A Novel Application Of Galleria Mellonella Larvae To Study Pathogenesis Of Rickettsia Rickettsii Infection, Jacob M. Jones

Honors College Theses

Rickettsia are obligate intracellular tick-borne bacteria that cause acute undifferentiated febrile illness accompanied by headache, malaise, myalgias, and disseminated endothelial infection. Immune responses to Rickettsia and pathogenesis of rickettsioses are not fully understood. Current work with Rickettsia is limited to vertebrate models that are strictly regulated and have low throughput. Since the innate immune system of vertebrates retains striking similarities with the immune response in insects, invertebrates are being used to study host responses to various pathogens. The purpose of this study was to evaluate if larvae of the greater wax moth Galleria mellonella (GML) can be used as an …

Gender And Ethnicity Bias In Wildland Fire Journals, Elizabeth Feth

Undergraduate Research Conference at Missouri S&T

Despite numerous efforts to improve both ethnic and gender diversity, STEM continues to be dominated by white men, particularly in field-based and management-driven disciplines of biology. The Association for Fire Ecology and the International Association for Wildland Fire have both formed diversity and inclusion committees since 2010 to examine and promote a more inclusive and balanced field; however, progress in these arenas can be slow. We examined peer reviewer discrimination against women and ethnic minorities in the International Journal of Wildland Fire in papers published from 2010 to 2019 utilizing the number of days in review compared against the total …

The Big Picture: Consolidating National Government And Cites Records Of Animal Trade In The Philippines From 1975 To 2019, Ronald Allan L. Cruz, Catherine Genevieve B. Lagunzad

Biology Faculty Publications

The Philippines has exceptionally high biodiversity but is also a hotspot. It is a recognized source; destination; and transit point for the global wildlife trade; which drives biodiversity loss. There is an abundance of data from the Convention on International Trade in Endangered Species of Wild Fauna and Flora (CITES) on the Philippines; but this data has not been assessed for historical trends. Confiscation data reflecting the illegal trade is scarcer; coming from recent (2008 onward) records of the Department of Environment and Natural Resources ___ Biodiversity Management Bureau (DENR-BMB) and the Palawan Council for Sustainable Development (PCSD). CITES data …

A Tail’S Tale: Biomechanical Roles Of Dorsal Thoracic Spine Of Barnacle Nauplii, Emily Branam , '21, J. Y. Wong, B. K. K. Chan, Kit Yu Karen Chan

Biology Faculty Works

Many marine invertebrates have complex life histories that begin with a planktonic larval stage. Similar to other plankton, these larval invertebrates often possess protruding body extensions, but their function beyond predator deterrence is not well-documented. For example, the planktonic nauplii of crustaceans have spines. Using the epibiotic pedunculate barnacle Octolasmis spp., we investigated how the dorsal thoracic spine affects swimming and fluid disturbance by comparing nauplii with their spines partially removed against those with intact spines. Our motion analysis showed that amputated Octolasmis spp. swam slower, in jerkier trajectories, and were less efficient per stroke cycle than those with intact …

How Gata3 Affects Neuronal Survival In The Inner Ear, Hiba Ahmad

Honors Theses

Broadly speaking, Gata3 is a transcription factor involved in neurosensory specification and hair cell differentiation. Previous studies have shown that Gata3 null mutants do not develop neurons, so Gata3 appears to be necessary for neuronal survival. To better understand the role of Gata3 in spiral ganglion neurons of the inner ear, a Neurod1-cre model was used to conditionally knock out Gata3 at E9-E9.5, the timepoint when neuroblasts first begin to delaminate from the otic placode. The mutants used in this study were Nd1-cre: Gata3 f/f mutants. In situ was performed to determine gene expression within the cochlea, and immunohistochemistry was …

Interplay Between Mirnas And Lncrnas: Mode Of Action And Biological Roles In Plant Development And Stress Adaptation, Xianxiang Meng, Aixia Li, Bin Yu, Shengjun Li

School of Biological Sciences: Faculty Publications

Plants employ sophisticated mechanisms to control developmental processes and to cope with environmental changes at transcriptional and post-transcriptional levels. MicroRNAs (miRNAs) and long noncoding RNAs (lncRNAs), two classes of endogenous noncoding RNAs, are key regulators of gene expression in plants. Recent studies have identified the interplay between miRNAs and lncRNAs as a novel regulatory layer of gene expression in plants. On one hand, miRNAs target lncRNAs for the production of phased small interfering RNAs (phasiRNAs). On the other hand, lncRNAs serve as origin of miRNAs or regulate the accumulation or activity of miRNAs at transcription and post-transcriptional levels. Theses lncRNA …

281— Insect Soundscapes In Western New York, Sarah Metz, Mackenzie Bancroft, Dana Moukaled

GREAT Day Posters

Recent assessments of insect populations suggest significant declines in abundance and diversity across the globe. These assessments have not included western New York, so it is important to gain an understanding of the insect diversity and abundance in our local habitats, particularly grasslands. One noninvasive way to sample insect populations is to record the acoustic signals used by these animals. Male insects of several taxa advertise for mates in the late summer by producing species-specific vocalizations at potential breeding sites. We are using acoustic recordings to examine three local sites for their use by singing insects. Acoustic recordings collected during …

352— Investigating The Function Of Mhc Class I In Xenopus Laevis Tadpoles, Stephanie Alvarez Merlos, Annika Mounts

GREAT Day Posters

Xenopus laevis, is an excellent model organism for transgenesis and immunological research due to their large eggs and the similarities between mammalian and amphibian immune systems. MHC Class I is found on nearly all cells and educates T cells to recognize between self and non-self which is an essential immune system function. However, tadpoles don’t have detectable MHC Class I expression while adult frogs do. Despite this tadpoles are still immunocompetent; thus the role of MHC Class I in tadpoles is unknown. To investigate MHC Class I function we inactivated the corresponding gene in Xenopus laevis using CRISPR/Cas9. The …

Too Little Ph: How Freshwater Acidification Impacts The Abundance Of Macrophytes Consumed By Rusty Crayfish, Lauren Tucker, Paul Moore Dr., Jay Jones Mr.

Honors Projects

Anthropogenic activities such as the burning of fossil fuels result in increased atmospheric carbon dioxide (CO₂) concentration. High levels of atmospheric CO₂ cause chemical shifts in the carbon cycle. Changes in the carbon cycle due to increased CO₂ levels lead to ocean and freshwater acidification. Freshwater acidification is problematic for species that synthesize their own shells as well as species that use olfaction for decision-making. Rusty crayfish (Faxonius rusticus) were subject to simulated freshwater acidification and fed two types of macrophyte, Chara (Chara braunii) and Myriopyllum (Myriophyllum sibiricum). A series …

Color Patterns In Amphibians, Zaizhen Xu, Nikki Parikh, Jasmine Kuo, Helena Czochanski, Muskaan Taneja, Makaila Gaff

Pacific Undergraduate Research and Creativity Conference (PURCC)

No abstract provided.

Winter Skate (Leucoraja Ocellata) Neurocranium, Daulton J. Scharf, David W. Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

Prepared Winter Skate Jaw

Optimization Of Grow-Out Of Bouldering Coral Microfragments: Land Vs. Offshore Nursery, Ashlee A. Steinberg

All HCAS Student Capstones, Theses, and Dissertations

Corals along the Florida Reef Tract and the wider Caribbean have been declining for decades. Low densities of adult colonies hinder the ability of corals to replenish themselves through sexual reproduction, thus reef managers are focusing on restoration actions that increase coral biomass. Microfragmentation is a way to quickly increase the biomass of bouldering corals by cutting the coral into small pieces which forces the coral to allocate its resources away from reproduction and back into growth, increasing its growth rate. This study assessed the optimal location for grow-out (land vs. offshore nursery) and its synergy with size of fragment …

Winter Skate (Leucoraja Ocellata) Jaw, Krystal Renta, David Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

Jaw prep from Winter Skate (Leucoraja ocellata)

Research Proposal: Clarifying Any Interactions Between Cytoskeletal Proteins And The Aminopeptidase Pam-1, Alexis Ayala

Biology Presentations

Caenorhabditis elegans is a transparent roundworm that functions as an ideal model organism for studying the complex processes that occur during embryonic cell division. The cell division process is comprised of distinct phases that ensure the development of a healthy and robust embryo. The cytokinesis phase is characterized by the formation of a contractile ring near the middle of the embryo. When this contractile ring constricts, the embryo can effectively divide into two cells. Recent work in the Lyczak laboratory has focused on better understanding how the aminopeptidase PAM-1 works in conjunction with cytoskeletal proteins to regulate the actomyosin cytoskeleton. …

Use Of Ultrasounds And Cystotomies In Diagnosing And Resolving Bladder Stones, Kirsten Cline

Biology Presentations

The use of ultrasounds are the most safe and effective way to detect bladder stones. Bladder stones are easy to detect with acoustic shadowing, a white bright twinkle effect, and heaviness. Cystotomies are one of the most common procedures to solve bladder stones with one of the lowest mortality and morbidity rates. Kiara, a one year old feline presented with UTI symptoms and was diagnosed with bladder stones. An ultrasound was used and a cystotomy was performed.

Barndoor Skate (Dipturus Laevis) Jaw Prep, Nathan P. Andrews, David Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

Jaw Prep from Barndoor Skate (Dipturis laevis)

Crayfish And Climate Change: How The Growing Acidity Of Freshwater Lakes, Streams, And Ponds Negatively Impact The Nervous System Of Crayfish, Lauren Irmen

Honors Theses

The nervous system of crayfish, a freshwater crustacean, is largely regulated by the flow of calcium (Ca²⁺) ions in a cell across a concentration gradient that produces electrical impulses and controls movement (Krause et al., 1998). Crayfish obtain Ca²⁺ from their external aquatic environment. Therefore, rapid changes in the concentration of Ca²⁺ in freshwater environments may cause negative impacts to the neural system of crayfish and subsequently the freshwater food chain. These impact of altered Ca²⁺ levels may create hyperactive or hypoactive movement due to over-, under-stimulation, respectfully in the skeletal muscle of the crayfish, …

The Contribution Of The Pectoral Fins, Body, And The Ribbon Fin To Turning Maneuvers Of A Gymnotiform Swimmer, Olivia Hawkins

Master of Science in Integrative Biology Theses

Turning is an ecologically important maneuver in fishes as it is used in prey detection, predator avoidance, and to navigate complex environments. Fishes with traditional control surfaces primarily use body bending and pectoral fins to turn. However, little is known about how fishes with atypical control surfaces facilitate turning. This study investigated the weakly electric Black ghost knifefish (Apteronotus albifrons: Apteronotidae) with an atypical control surface, namely a ribbon fin. To investigate how a fish with an atypical control surface performs turning maneuvers, A. albifrons was filmed performing small and large turns and during steady swimming using high …

The Interconnectivity Of Parkinson's Disease And Type Two Diabetes Mellitus, Erica Olfson

Honors Scholars Collaborative Projects

This thesis is about the biochemical connection between Parkinson's disease and Type II Diabetes Mellitus.

Jen Schaefer’S 2021 Induction Ceremony Address: "Astrocytes, Allostasis And The Liberal Arts", Jennifer Schaefer

Phi Beta Kappa Lectures

This is the 12th cohort of students who have been inducted into the chapter, which now counts just under 800 members.

Jennifer Schaefer, associate professor of biology and the department chair at CSB/SJU who received Phi Beta Kappa recognition while attending St. Olaf College as an undergraduate student, speaks on “Astrocytes, Allostasis and the Liberal Arts” about the importance of the liberal arts for scientific advancement and in students’ lives as they leave CSB/SJU.

The group includes 42 seniors and 11 juniors, and they represent five countries and 11 states. Those selected are Phi Beta Kappa members for life, and …

Blue Jay Call Profile In Disparate Environments, Daniel A. Gesualdi

Pell Scholars and Senior Theses

Many species of birds have been observed to develop higher-pitched calls in urban environments; however local Blue Jays are unstudied (Mockford and Marshall, 2009). The urban environment's high noise pollution imposes a significant fitness challenge; then, the urban Jay calls will be different (higher) than rural Jay(Parris and Schneider, 2009). A series of recordings were taken in rural and urban environments; it was clear that there is a significant increase in maximum and minimum kHz in urban jays than rural jays. These results suggest that blue jays alter their calls to accommodate the environmental factors in urban settings similar to …

Effects Of Environmental Factors On Sensitivity Of Cryptococcus Neoformans To Fluconazole And Amphotericin B, Tyler Carlson, Emily Lupinacci, Katie Moseley, Srikripa Chandrasekaran

Open Access Fund Publications

Cryptococcus neoformans is a leading cause of fungal meningitis in immunocompromized populations. Amphotericin B (AMB) and fluconazole (FLC) are common anticryptococcal agents. AMB treatment leads to severe side-effects. In contrast, FLC-based therapy is relatively safe, although C. neoformans often develops resistance to this drug. C. neoformans must adapt to the challenging environment of the human host. Environmental effects on potency of AMB and FLC and development of drug resistance remain poorly characterized. Here, the effects of nutrients, temperature and antioxidants on susceptibility of C. neoformans towards FLC and AMB were investigated. Limited nutrients led to a decrease and an increase …

A Baseline Documentation Report For The Delta Wind Birds Sky Lake Nature Reserve, Preston T. Perkins, J Hays Dubberly, Michael J. Thomas, Jensine Coggin

Honors Theses

The purpose of this baseline documentation is to conduct a report on our subject property and discuss the findings. A conservation easement is established by upholding a certain standard of a property’s current condition which makes a baseline documentation necessary for an easement to be enacted. Baseline documentation reports are used as a resource to monitor and enforce the legal agreements of the conservation easement. The subject property is currently owned by the Delta Wind Birds organization. In our scenario, this documentation report will serve to aid in the conversion of our subject property into a conservation easement in which …

Corticospinal Excitability During A Perspective Taking Task As Measured By Tms-Induced Motor Evoked Potentials, Elizabeth Murray, Janet Brenya, Katherine Chavarria, Karen J. Kelly, Anjel Fierst, Nathira Ahmad, Caroline Anton, Layla Shaffer, Kairavi Kapila, Logan Driever, Kayla Weaver, Caroline Dial, Maya Crawford, Iso Hartman, Tommy Infantino, Fiona Butler, Abigail Straus, Shakeera L. Walker, Brianna Balugas, Matthew Pardillo, Briana Goncalves, Julian Keenan

Department of Biology Faculty Scholarship and Creative Works

Only by understanding the ability to take a third-person perspective can we begin to elucidate the neural processes responsible for one’s inimitable conscious experience. The current study examined differences in hemispheric laterality during a first-person perspective (1PP) and third-person perspective (3PP) taking task, using transcranial magnetic stimulation (TMS). Participants were asked to take either the 1PP or 3PP when identifying the number of spheres in a virtual scene. During this task, single-pulse TMS was delivered to the motor cortex of both the left and right hemispheres of 10 healthy volunteers. Measures of TMS-induced motor-evoked potentials (MEPs) of the contralateral abductor …

Crocuta Crocuta (Carnivora: Hyaenidae), Virginia Hayssen, Paula Noonan

Biological Sciences: Faculty Publications

Crocuta crocuta (Erxleben, 1777), the spotted hyena, is a large, widespread, terrestrial carnivore with a female-dominant social system. It ranges from about 17°N to 28°S and lives in diverse habitats from savannas to swamps (but not rain forests) and up to 4,000 m in elevation. As assessed in 2014, C. crocuta is listed as "Least Concern"(LC) by The International Union for Conservation of Nature and Natural Resources Red List of Threatened Species version 2016.1.

[Squalus Acanthus (Spiny Dogfish Shark)]Jaw, Ally E. Sheehan

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

Jaw from Female, [length] 6cm, [width] 5.5 cm [Squalus acanthias (Sping Dogfish shark)]

Fagus Sylvatica (European Beech), #1009, Megan L. Trafford

BIO 140 Arboretum Project

No abstract provided.