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The Velvet Ants (Hymenoptera: Mutillidae): Systematics, Biology, And Biogeography Of A Little-Known Family, George Charles Waldren May 2021

The Velvet Ants (Hymenoptera: Mutillidae): Systematics, Biology, And Biogeography Of A Little-Known Family, George Charles Waldren

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Insects are a ubiquitous and species-rich component of the biologically-diverse planet we inhabit. The majority of insects are understudied, with many species awaiting formal description and their natural history yet to be discovered. Members of the family Mutillidae, commonly known as velvet ants, are one of these little-known insect groups. Velvet ants are technically wasps, and the wingless females superficially resemble true ants of the family Formicidae. Further, they frequently have a ‘velvety’ appearance and are often brightly colored to serve as a warning to would-be predators that they have the ability to inflict a painful sting. These insects are …


Strike-Induced Chemosensory Searching, Kleptoparasitism, And The Possibility Of Chemical Crypsis In Rattlesnakes, Mark Scott Teshera May 2021

Strike-Induced Chemosensory Searching, Kleptoparasitism, And The Possibility Of Chemical Crypsis In Rattlesnakes, Mark Scott Teshera

Open Access Theses & Dissertations

Predator-prey interactions shape the natural histories of both species as each tries to adapt and counter-adapt to the tactics of the other. This important evolutionary dynamic is crucial for ecosystem formation and stability. Predation is a fundamental aspect of life for most organisms, and many venomous reptiles, particularly ambush-foraging viperids, have evolved a prey-acquisition strategy that is highly effective in immobilizing prey, while minimizing possible counterattacks. Best studied in rattlesnakes, this remarkable behavioral sequence is known as strike-induced chemosensory searching (SICS). Throughout decades of research, the body of SICS literature on venomous reptiles has become fairly robust, particularly in rattlesnakes. …


Characterization Of Gabaergic Horizontal Cells In The Mouse Retina, Zulema Uresti May 2021

Characterization Of Gabaergic Horizontal Cells In The Mouse Retina, Zulema Uresti

Open Access Theses & Dissertations

The inner nuclear layer of the mammalian retina contains the cell bodies of the amacrine, bipolar and horizontal neurons. About 90% of the amacrine neurons are glycinergic and GABAergic and marked by the expression of the vesicular inhibitory amino acid transporter, VIAAT. By contrast, the phenotype in horizontal inhibitory neurons vary among different mammals. In the primate retina, experimental evidence suggests the absence of VIAAT and hypothesizing that GABA could be released by efflux through the GABA transporters. On the other hand, in rodents, the horizontal cells express the VIAAT and carry out vesicle-dependent GABA release. Although the retina cells …


Effects Of Anthropogenic Light And Noise On Anuran Breeding Behavior, Ashley Kobisk May 2021

Effects Of Anthropogenic Light And Noise On Anuran Breeding Behavior, Ashley Kobisk

Electronic Theses and Dissertations

The natural environment can be negatively impacted by a variety of human activities, including the production of artificial light at night and anthropogenic noise. Recent studies suggest that pollution from anthropogenic light and noise alters animal behavior. Despite being highly nocturnal and vocal animals, little attention has been given to anurans and the effects artificial light at night and anthropogenic noise have on their behavior. This study investigated the effects of artificial light at night and anthropogenic noise on anuran breeding systems in eastern Texas. Specifically, this study investigated whether (1) artificial light and anthropogenic noise altered calling behavior in …


Evaluation Of Nickel Stress On Anabaena Cylindrica, Danielle L. Maragh May 2021

Evaluation Of Nickel Stress On Anabaena Cylindrica, Danielle L. Maragh

Seton Hall University Dissertations and Theses (ETDs)

Heavy metal contamination due to anthropogenic activities has steadily been on the rise over the past few decades. Cyanobacteria can thrive in water bodies that have been contaminated by heavy metal runoffs and are able to tolerate heavy metal stress even in relatively high concentrations. Cyanobacterial species can secrete toxins which can prove harmful to humans and life stock. Due to their high adaptation to heavy metal stress, understanding the potential mechanism behind their response may lead to solutions in curbing excessive cyanobacterial growth especially in water bodies that serves as sources of drinking water. Anabaena spp. is a genus …


Color Of Pan Trap Influences Sampling Of Bees In Livestock Pasture Ecosystem, Roshani S. Acharya, Timothy Leslie, Emily Fitting, Joan Burke, Kelly Loftin, Neelendra K. Joshi May 2021

Color Of Pan Trap Influences Sampling Of Bees In Livestock Pasture Ecosystem, Roshani S. Acharya, Timothy Leslie, Emily Fitting, Joan Burke, Kelly Loftin, Neelendra K. Joshi

Entomology and Plant Pathology Faculty Publications and Presentations

The decline in insect pollinators has increased the importance of accurately monitoring pollinator diversity and abundance over time. Sampling techniques include the use of passive insect traps such as pan traps, yet there is still discussion over their utility and effectiveness in different ecosystems. The objective was to examine four different colors of pan traps (blue, green, yellow, and purple) for their utility in sampling bees in native forages rotationally grazed by sheep and to compare the relative abundance, richness, similarity, and community assemblage patterns among the four trap colors. Most bees were from the Halictidae family (89%). The most …


The Bees Of Two Sites In The Big Thicket National Preserve, Texas, With A Consideration Of The Effects Of A Rare Flooding Event, Archie Ray Sauls Jr. May 2021

The Bees Of Two Sites In The Big Thicket National Preserve, Texas, With A Consideration Of The Effects Of A Rare Flooding Event, Archie Ray Sauls Jr.

Electronic Theses and Dissertations

Native bees are an important part of terrestrial ecosystems due to their coevolution with flowering plants. This study catalogued the bee fauna of two sandyland sites in the Big Thicket National Preserve and assessed whether a community was impacted by a historic hurricane-induced flooding event. It was hypothesized that a change in diversity metrics would be evident following the flood. Datasets were analyzed for differences in species richness, abundance, evenness, and Shannon’s diversity. Similarities between datasets were also assessed using the multivariate tests analysis of similarity (ANOSIM) and similarity of percentages (SIMPER). At two sites over two years of sampling …


Is The Dewlap An Honest Signal Of Fighting Ability In The Male Green Anole (Anolis Carolinensis)?, Alexia Hughes May 2021

Is The Dewlap An Honest Signal Of Fighting Ability In The Male Green Anole (Anolis Carolinensis)?, Alexia Hughes

Graduate Theses

Signals are morphological or behavioral traits that an individual uses to influence the behavior or actions of another. These signals can be used in male-male competition, in which male secondary sexual traits act as a signal of his fighting ability. Animal signals are considered honest when the signal reliably indicates a specific trait or condition of the individual. The genus Anolis, comprised of over 400 species that occupy the tropics and the southeastern United States, utilize aggressive signaling prior to physical combat. Research on several tropical species of anole indicates that the size of their dewlap can act as an …


Role Of Secretory Leukocyte Protease Inhibitor In Urinary Tract Infection, Anne Rosen May 2021

Role Of Secretory Leukocyte Protease Inhibitor In Urinary Tract Infection, Anne Rosen

Arts & Sciences Graduate Student Theses and Dissertations

Urinary tract infections (UTIs) affect 150 million people per year worldwide and can be difficult to diagnose and treat leaving room for other biomarkers to be used to define an infection. Secretory leukocyte protease inhibitor (SLPI), an antimicrobial protein also with antiprotease and anti-inflammatory properties, may be involved in host response to UTI. Here we use an established UPEC-UTI model to infect female Slpi knockout and wild type mice to show SLPI plays a role in microbial ecology of the bladder. Bacterial abundance is altered in urinary tracts and is positively correlated with SLPI in urine of wild type mice. …


Differential Gene Expression In Starvation Selected Drosophila Melanogaster, Katherine Schultz May 2021

Differential Gene Expression In Starvation Selected Drosophila Melanogaster, Katherine Schultz

UNLV Theses, Dissertations, Professional Papers, and Capstones

Fruit flies that have been selected for starvation resistance can be used in experimental studies to study physiological processes. Both their genomes and their phenotypes, especially metabolism, change significantly as a result of artificial selection. Starvation selected flies develop slower and are larger due to higher lipid content as adults. We used RNAseq to study gene expression in third instar larval fat body tissue from selected and control lines at the same chronological time point, when the fed control (“FC”) lines were wandering, and the starvation selected (“SS”) lines were in the third larval instar but not yet wandering due …


Distributions And Habitat Associations Of Blue Point Pyrgulopsis And Blue Point Tryonia, Chenoa Janine Wilcox May 2021

Distributions And Habitat Associations Of Blue Point Pyrgulopsis And Blue Point Tryonia, Chenoa Janine Wilcox

UNLV Theses, Dissertations, Professional Papers, and Capstones

Springsnails and other crenophilic species are often of conservation concern due to endemism, narrow habitat requirements, and susceptibility to habitat degradation. Because there is a distinct lack of natural history information for many of these organisms, management of species that are of concern is often based on data from non-target species related to the species of interest. In this thesis, I provide background information regarding springsnails in western North America (Chapter 1), describe a study investigating the distribution and habitat associations of two springsnails endemic to a single spring (Chapter 2), and provide supplemental information on habitat characteristics associated with …


Mitochondrial Replacement And Mitonuclear Interactions In The Broadstripe Topminnow (Fundulus Euryzonus), Auburn Ansley May 2021

Mitochondrial Replacement And Mitonuclear Interactions In The Broadstripe Topminnow (Fundulus Euryzonus), Auburn Ansley

Honors Theses

When species hybridize, mitochondrial and nuclear introgression can take place. This is commonly observed in freshwater fish species, such as the Fundulus notatus complex, which is composed of F. notatus, F. olivaceus, and F. euryzonus. The broadstripe topminnow, F. euryzonus, is only found in the Amite and Tangipahoa Rivers in the Lake Pontchartrain drainage, where it overlaps in distribution with F. olivaceus. Previous studies determined that F. euryzonus in the Tangipahoa River system possesses mitochondrial DNA (mtDNA) from F. olivaceus as a result of hybridization between the two species. The goal of this thesis was …


The Small Gtpase Rab-35 Facilitates The Initiation Of Phagosome Maturation And Acts As A Robustness Factor For Apoptotic Cell Clearance, Ryan Haley, Zheng Zhou May 2021

The Small Gtpase Rab-35 Facilitates The Initiation Of Phagosome Maturation And Acts As A Robustness Factor For Apoptotic Cell Clearance, Ryan Haley, Zheng Zhou

Faculty, Staff and Students Publications

We recently identified the novel function of the small GTPase RAB-35 in apoptotic cell clearance in Caenorhabditis elegans, a process in which dying cells are engulfed and degraded inside phagosomes. We have found that RAB-35 functions in two separate steps of cell corpse clearance, cell corpse recognition and the initiation of phagosome maturation. During the latter process, RAB-35 facilitates the removal of phosphatidylinositol-4,5-bisphosphate (PI(4,5)P2) from the membranes of nascent phagosomes and the simultaneous production of phosphatidylinositol-3-P (PI(3)P) on these same membranes, a process that we have coined the PI(4,5)P2 to PI(3)P shift. RAB-35 also promotes the recruitment of the …


Pathological Mechanisms Of Vacuolar Aggregate Myopathy Arising From A Casq1 Mutation, Amy D Hanna, Chang Seok Lee, Lyle Babcock, Hui Wang, Joseph Recio, Susan L Hamilton May 2021

Pathological Mechanisms Of Vacuolar Aggregate Myopathy Arising From A Casq1 Mutation, Amy D Hanna, Chang Seok Lee, Lyle Babcock, Hui Wang, Joseph Recio, Susan L Hamilton

Faculty, Staff and Students Publications

Mice with a mutation (D244G, DG) in calsequestrin 1 (CASQ1), analogous to a human mutation in CASQ1 associated with a delayed onset human myopathy (vacuolar aggregate myopathy), display a progressive myopathy characterized by decreased activity, decreased ability of fast twitch muscles to generate force and low body weight after one year of age. The DG mutation causes CASQ1 to partially dissociate from the junctional sarcoplasmic reticulum (SR) and accumulate in the endoplasmic reticulum (ER). Decreased junctional CASQ1 reduces SR Ca


Infectious Diseases In A Warming World: Using A Modified Sir Model To Investigate The Incidence Rates Of Lyme Disease In The New England Area, Carly Sullivan Apr 2021

Infectious Diseases In A Warming World: Using A Modified Sir Model To Investigate The Incidence Rates Of Lyme Disease In The New England Area, Carly Sullivan

Honors Projects in Science and Technology

The effects of climate change are global and unprecedented in scale. Public health is likely to suffer as a result of the warming climate, and one particular risk is the increase in the occurrence of vector-borne diseases (VBDs) in different regions across the world. The purpose of this project is to investigate the impact of rising temperatures on the incidence rates of Lyme disease in the New England area. Following a review of the existing literature relating to the impact of climate factors on VBDs, an SIR model modified for temperature conditions will be utilized to produce several simulated scenarios. …


Effects Of Environmentally Relevant Concentrations Of 4-Methyl-1- Cyclohexanemethanol (Mchm) On General Esterase And Glutathione-S-Transferase Activity In Fathead Minnows (Pimephales Promela), Emily De Wind Apr 2021

Effects Of Environmentally Relevant Concentrations Of 4-Methyl-1- Cyclohexanemethanol (Mchm) On General Esterase And Glutathione-S-Transferase Activity In Fathead Minnows (Pimephales Promela), Emily De Wind

Research in Biology

Abstract

In 2014, several thousand gallons of coal-processing chemicals, which included 4-methyl-1- cyclohexanemethanol (MCHM), spilled into the Elk River in West Virginia. The location of this spill in West Virginia’s chemical valley is historically significant in defining the exploitations of people residing in this area. The concentration of crude MCHM in the river was approximated at 0.15 µg/L. Although some initial studies did consider the effects of MCHM exposure on humans, little attention has been given to aquatic wildlife. In this project, I will expose fathead minnows, Pimephales promelas, an environmentally relevant species, to concentrations of MCHM between zero …


Effect Of Temperature On Questing Activity Of Ixodes Scapularis In A Laboratory Setting, Molly Meagher Apr 2021

Effect Of Temperature On Questing Activity Of Ixodes Scapularis In A Laboratory Setting, Molly Meagher

Thinking Matters Symposium

Understanding deer tick (Ixodes scapularis) behavior is increasingly important due to the species’ northerly range expansion, and consequently, increased human contact. Deer ticks are a major public health concern, as they are the primary vector of Lyme disease and other serious diseases. Differences in questing behavior are of considerable interest as fluctuating weather due to climate change effect the species’ range expansion and time spent questing. Although previous research has examined temperature preferences of tick behavior, there are conflicting reports about direct effects on questing activity. Therefore, I addressed the relationship between temperature and questing behavior of adult deer ticks. …


Effects Of Ibuprofen On Duration Of Fear Responses In Red Claw Crabs, Ryan Shaffer Apr 2021

Effects Of Ibuprofen On Duration Of Fear Responses In Red Claw Crabs, Ryan Shaffer

Thinking Matters Symposium

Pharmaceutical pollution is a growing environmental issue. Chemicals engineered to affect humans persist in the water system and may have unintended effects on animal behavior. Ibuprofen is an anti-inflammatory drug shown to reduce predator avoidance in fish. I chose to examine the effects of ibuprofen on the foraging behavior of red clawed crab (Perisesarma bidens) by measuring time spent in the open. Crabs typically spend most of their time hiding and only expose themselves to danger in order to forage for food. I predicted that crabs treated with the high dose of ibuprofen will spend less time hiding compared to …


Black-Capped Chickadee (Parus Atricapillus) Food Preference, Isabelle Gilbert Apr 2021

Black-Capped Chickadee (Parus Atricapillus) Food Preference, Isabelle Gilbert

Thinking Matters Symposium

All animals must make decisions on where to find, select, capture, and eat food. These factors contribute to a species’ food preference, such as making decisions on what food to eat based on calories. Optimal foraging theory predicts how an animal behaves when searching for food, including optimization of food type, patch choice, time spent in patches, and movement. All animals also make decisions based on predation risk by avoiding predators and making trade-offs on time spent searching for, pursuing, and handling food. The objective of my study is to examine food preference of black-capped chickadees (Parus atricapillus). Birds may …


How Genetics Plays A Role In Avian Migration, Tyler Bauersfeld Apr 2021

How Genetics Plays A Role In Avian Migration, Tyler Bauersfeld

Thinking Matters Symposium

Avian migration is an adaptive response to seasonal environments, which means that birds move from one region to another on migratory routes due to environmental factors. Migratory behavior is ubiquitous within and among many bird species, and this poster will review two studies of how migratory behavior is affected on a genetic level as well as how avian migration has independently evolved in many different lineages. A study of the Eurasian blackcap from southern France demonstrates how environmental factors and parent lineages affect the genetic behavior of migration. This study also demonstrated how sedentary populations of birds have been shown …


Investigation Of The Effects Of Curcumin On Woodsmoke-Induced Inflammation, Melissa Lewis Apr 2021

Investigation Of The Effects Of Curcumin On Woodsmoke-Induced Inflammation, Melissa Lewis

Honors Theses

Inflammatory diseases caused by biomass smoke exposure and indoor air pollution affect millions of people worldwide. These diseases can be caused by the burning of biomass (plastic, wood, rubber, tobacco, etc.) for light or heat. Acrolein is a common indoor and outdoor pollutant from tobacco smoke or organic combustion. Wood smoke is hypothesized to cause inflammation since it contains high concentrations of particulate matter and gaseous compounds and are similar in size to other well-known damaging particles. Natural remedies, like curcumin, are hypothesized to be a natural remedy for combating inflammation. The goal of this research was to investigate the …


Congenital Heart Defects And The Expression Of Ccdc141, Savanna Tillman Apr 2021

Congenital Heart Defects And The Expression Of Ccdc141, Savanna Tillman

Honors Theses

Congenital heart defects (CHDs) are one of the most prevalent types of birth defects in the United States. Both environmental and genetic components are known to contribute to the development of CHDs. One of the ways toxins present in the environment cause CHDs is by disrupting the expression of genes known to be vital in normal cardiac morphogenesis. Thus, the identification of both toxins that cause birth defects in cardiac development and genes expressed during heart development is crucial in order to fully understand the relationship between environment and genetics as they relate to CHD. Due to their external development, …


An Examination Of Mimetic Precision And The Selective Advantages Of Imprecise Mimics, Matt Hendricks Apr 2021

An Examination Of Mimetic Precision And The Selective Advantages Of Imprecise Mimics, Matt Hendricks

Honors Theses

First proposed by Henry Walter Bates in 1862, Batesian mimicry refers to the scenario in which an undefended species (the mimic) gains protection from predation due to its phenotypic resemblance to a noxious species (the model). Often, the model species possess a conspicuous phenotype which serves to warn predators of the species’ danger. A great deal of research spanning many decades has been devoted to this phenomenon as it applies to coral snakes. Coral snakes are quite noxious and are distinguished from other species of snakes by their banded patterns of bright colors such as red, yellow, and black. It …


Bioremediation: Breaking Down The Regulations Of Genetically Modified Microorganisms, Lora Katharine Naismith Apr 2021

Bioremediation: Breaking Down The Regulations Of Genetically Modified Microorganisms, Lora Katharine Naismith

Texas A&M Law Review

Environmental bioremediation is the use of biological activity to reduce the concentration or toxicity of a pollutant. A rapidly increasing population leads to a consequential increase in industrial waste and pollution, and innovators are researching numerous techniques to degrade these pollutants and prevent their spread into the environment. These techniques are expensive and often result in secondary pollutants, which limits their widespread application. Bioremediation, however, presents a cost-friendly and more efficient way to degrade pollutants with little or no secondary pollutants. This Article explores how scientists can use genetically modified microorganisms (“GMMs”) to target specific hazardous wastes that are otherwise …


A Baseline Documentation Report For The Delta Wind Birds Sky Lake Nature Reserve, James Dubberly Apr 2021

A Baseline Documentation Report For The Delta Wind Birds Sky Lake Nature Reserve, James Dubberly

Honors Theses

The purpose of this baseline documentation is to conduct a report on our subject property and discuss the findings. A conservation easement is established by upholding a certain standard of a property’s current condition which makes a baseline documentation necessary for an easement to be enacted. Baseline documentation reports are used as a resource to monitor and enforce the legal agreements of the conservation easement. The subject property is currently owned by the Delta Wind Birds organization. In our scenario, this documentation report will serve to aid in the conversion of our subject property into a conservation easement in which …


Restructuring The Gut Microbiota By Intermittent Fasting Lowers Blood Pressure, Huanan Shi, Bojun Zhang, Taylor Abo-Hamzy, James W Nelson, Chandra Shekar R Ambati, Joseph F Petrosino, Robert M Bryan, David J Durgan Apr 2021

Restructuring The Gut Microbiota By Intermittent Fasting Lowers Blood Pressure, Huanan Shi, Bojun Zhang, Taylor Abo-Hamzy, James W Nelson, Chandra Shekar R Ambati, Joseph F Petrosino, Robert M Bryan, David J Durgan

Faculty, Staff and Students Publications

Rationale:

In recent years, it has been demonstrated that a pathological change in the gut microbiota, termed gut dysbiosis, can be an underlying factor for the development of hypertension. Prevention of this dysbiosis can attenuate or abolish hypertension. Translational mechanisms to prevent gut dysbiosis as well as understanding of the mechanisms linking gut dysbiosis to hypertension are lacking.

Objective:

We first examined the efficacy of intermittent fasting (IF) in altering the gut microbiota and lowering blood pressure (BP). Next, we utilized a multi-omics approach to examine microbial influenced metabolites that may serve as the link between the gut microbiota and …


The Effects Of Maternal Behavior And Environmental Enrichment On Behavior And Cognition In Sprague-Dawley Rats, Kathryn C. Bates Apr 2021

The Effects Of Maternal Behavior And Environmental Enrichment On Behavior And Cognition In Sprague-Dawley Rats, Kathryn C. Bates

Longwood Senior Theses

Early environments critically impact the development of many organisms. Exposure to varying maternal care behaviors and environmental enrichments can cause persisting changes throughout a rat’s life. The current study examines the effect of high and low levels of maternal care and environmental enrichment on anxiety, resilience, spatial memory, and non-spatial memory. Maternal rats were identified as Good or Bad mothers based on their pup retrieval speed. Their pups were then sorted by maternal care they experienced and placed into two housing conditions: enriched, and control (resulting in four conditions total). Each group was assessed on four behavioral tests including the …


Effect Of Maternal Behavior On Anxiety, Resilience, And Memory In Sprague-Dawley Rats, Dorian F. Tignor Apr 2021

Effect Of Maternal Behavior On Anxiety, Resilience, And Memory In Sprague-Dawley Rats, Dorian F. Tignor

Longwood Senior Theses

This study seeks to determine the extent that maternal care of rodents influences anxiety levels, memory, and resiliency in the next generation. After categorizing maternal rats as Good and Bad mothers through a pup recognition test, they and their pups were put through a battery of behavioral tasks to assess anxiety (Elevated Plus Maze), memory (Novel Object Preference Test and Object Location Memory Task), and resiliency (Forced Swim Test). Preliminary results found that Good mothers have superior spatial and non-spatial memory in comparison to the Bad mothers. In addition, the pups raised by Good mothers showed greater resilience in comparison …


Effects Of Tropical Cyclones On Incubation And Hatch Frequency Of Marine Turtles In Broward County, Fl: An Exploratory Look For Potential Cues Of Environmentally Cued Hatching (Ech), Alexis Peterson Apr 2021

Effects Of Tropical Cyclones On Incubation And Hatch Frequency Of Marine Turtles In Broward County, Fl: An Exploratory Look For Potential Cues Of Environmentally Cued Hatching (Ech), Alexis Peterson

All HCAS Student Capstones, Theses, and Dissertations

Due to climate change and warming sea surface temperatures (SST), the intensity and frequency of tropical cyclones in the North Atlantic are continuing to increase. Tropical cyclones have many direct and indirect effects on coastal and marine species, such as sea turtles. Sea turtles are extremely vulnerable to climate change, due to having life history, physiology, and behavioral traits that are heavily influenced by environmental factors (Fuentes and Porter 2013). This study examined whether tropical cyclones serve as a triggering event for environmentally cued hatching (ECH) in loggerhead (Caretta caretta) and green (Chelonia mydas) turtle nests …


Towards Complete And Error-Free Genome Assemblies Of All Vertebrate Species, Arang Rhie, Shane A. Mccarthy, Olivier Fedrigo, Joana Damas, Giulio Formenti, Sergey Koren, Marcela Uliano-Silva, William Chow, Arkarachai Fungtammasan, Juwan Kim, Chul Lee, Byung June Ko, Mark Chaisson, Gregory L. Gedman, Lindsey J. Cantin, Francoise Thibaud-Nissen, Leanne Haggerty, Iliana Bista, Michelle Smith, Bettina Haase, Jacquelyn Mountcastle, Sylke Winkler, Sadye Paez, Jason Howard, Sonja C. Vernes, Tanya M. Lama, Frank Grutzner, Wesley C. Warren, Christopher N. Balakrishnan, Dave Burt, Julia M. George, Matthew T. Biegler Apr 2021

Towards Complete And Error-Free Genome Assemblies Of All Vertebrate Species, Arang Rhie, Shane A. Mccarthy, Olivier Fedrigo, Joana Damas, Giulio Formenti, Sergey Koren, Marcela Uliano-Silva, William Chow, Arkarachai Fungtammasan, Juwan Kim, Chul Lee, Byung June Ko, Mark Chaisson, Gregory L. Gedman, Lindsey J. Cantin, Francoise Thibaud-Nissen, Leanne Haggerty, Iliana Bista, Michelle Smith, Bettina Haase, Jacquelyn Mountcastle, Sylke Winkler, Sadye Paez, Jason Howard, Sonja C. Vernes, Tanya M. Lama, Frank Grutzner, Wesley C. Warren, Christopher N. Balakrishnan, Dave Burt, Julia M. George, Matthew T. Biegler

Biological Sciences: Faculty Publications

High-quality and complete reference genome assemblies are fundamental for the application of genomics to biology, disease, and biodiversity conservation. However, such assemblies are available for only a few non-microbial species1–4. To address this issue, the international Genome 10K (G10K) consortium5,6 has worked over a five-year period to evaluate and develop cost-effective methods for assembling highly accurate and nearly complete reference genomes. Here we present lessons learned from generating assemblies for 16 species that represent six major vertebrate lineages. We confirm that long-read sequencing technologies are essential for maximizing genome quality, and that unresolved complex repeats and haplotype heterozygosity are major …