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Growth And Whole-Body Proximate Composition Of Oreochromis Niloticus Nile Tilapia Fed Pea Meal: A Systematic Review And Meta-Analysis, Tzodoq Obrero Magbanua, Janice A. Ragaza

Biology Faculty Publications

One of the most widely cultivated species in the aquaculture sector is the Nile tilapia (Oreochromis niloticus). However, the rising price of fishmeal has a huge impact on its market value. Proteins derived from plants have been used to address the issue. In this study, systematic review and meta-analysis were used to quantitatively analyze the whole-body composition and growth of Nile tilapia fed pea meal. Based on the preferred reporting items for systematic reviews and meta-analysis methods, the literature review and paper selection were completed. Meta-analysis was performed on the data from peer-reviewed studies that met the inclusion …

Dormant Propagules In Demographic Studies: A Recurrent Bias And Potential Solutions, Federico Borghesi

Graduate Thesis and Dissertation 2023-2024

In the face of unprecedented anthropogenic change, we increasingly turn to emergent technologies and extensive data sets for solutions that complement much needed systemic changes in our societies. These technological solutions, however, must be approached with care. We must recognize and address biases in the way data has been accumulated. In demographic studies, dormant life stages, such as seed banks, and other cryptic factors have often been neglected. The potential consequences of these omissions have been extensively described in the literature. In the first chapter, I analyze patterns of seed bank omissions in demographic models, finding unjustified omissions are widespread …

Body Condition: Seasonal Effects And Influence On Aggressive Behavior Of Ozark Zigzag Salamanders (Plethodon Angusticlavius), Ayesha Farooq

Graduate Theses/Dissertations

Body condition is a measure of the size of energy reserves such as fat and protein, which can influence health and the ability to obtain resources in aggressive encounters. Individuals with better body condition ultimately experience a fitness advantage. Physiological factors such as sex, reproductive condition, and diet can influence body condition of individuals. Body condition could be affected positively or negatively after an animal is kept in captivity for extended periods of time. In the first chapter, I explore whether sex, season (fall and spring), and time in containment at the laboratory influences body condition. In the second chapter, …

Tissue And Sex-Dependent Regulation Of Innate Immunity And Rna Editing In Mice, Kelsey R. Kendrick

Graduate Theses/Dissertations

Inflammation occurs as a result of insult or infection within the body. Individual cells respond to inflammation by upregulating genes that help mediate the immune response, such as ADAR1. ADAR1 helps regulate the immune response but also catalyzes a process called RNA editing. RNA editing alters the sequence of select mRNAs to alter the encoded proteins. The result is altered function of the encoded protein, which is often beneficial for the cell. Our goal was to determine how inflammation affects the function of ADAR1. Since we know that the effects of inflammation vary between different organs and sexes, we examined …

Molecular Investigation Of Minor Genomic Populations And Biological Exposures In Human Health, Brandon Ned Johnson

Dissertations and Theses

The study of genetics has contributed to countless discoveries related to human health and disease. However, the complexities of human biology reside not only in the genome but also in the contributions from environmental exposures, as measured via the classical twin design. To understand the influence of biological exposures, I implemented study designs to explore both the health associations and propagation of foreign genetic material. Microchimerism has been studied for association with several clinical conditions, and I further investigated if male microchimerism could elucidate the etiology of Mayer-Rokitansky-Küster-Hauser syndrome. Prevalence of male microchimerism in women with no history of pregnancy …

Effects Of Translocation On Eastern Black-Tailed Rattlesnakes (Crotalus Ornatus) In The Northern Chihuahuan Desert, Jacob A. Coffman

Lewis Honors College Thesis Collection

AS HUMANITY continues to grow and expand, we inevitably encroach on wildlife habitat. This can create conflict between humans and wildlife. Human wildlife conflict usually occurs when humans are near areas where wildlife typically reside. A prime example is a farmer coming into conflict with animals that predate their seeds or livestock. The most common response to this problem in many areas is lethal control to prevent economic loss (Dickman 2010). This seems like an immediate resolution of the conflict in the human’s perspective, but this action can have many adverse effects. This killing may result in negative social outcry, …

Bibliography, Bruce A. Schulte

Faculty/Staff Personal Papers

Bibliography of publications by Bruce Schulte.

Figure Set Update: An Inquiry-Based Module Aligned With The 4dee Framework For Teaching About Functional Responses And Biological Control, Rosny Jean, Linda Auker, Suann Yang, Jeremy Hsu

Open Educational Resources

THE ISSUE

Biological control agents are used in a wide range of contexts to limit damage from pests. However, the broader ecological consequences of such agents often are unclear before ecological risk assessments are performed. This Figure Set guides students to think through potential consequences of using biological control agents, and then uses a specific study to challenge students to interpret results from laboratory and caged field experiments. This Figure Set also introduces the concept of functional responses to students.

FOUR DIMENSIONAL ECOLOGY EDUCATION (4DEE) FRAMEWORK

• Core Ecological Concepts:
• Organisms
• Resources and regulators
• Communities
• Predation
• Ecology Practices:
• Quantitative reasoning and …

Artificial Light At Night Disrupts Male Dominance Relationships And Reproductive Success In A Model Fish Species, Lauren E. Closs, Muhammad Rahmad Rayan, Amin Sayyari, Ian Mayer, Finn-Arne Weltzien, Dianne M. Baker, Romain Fontaine

Biological Sciences Research

Environmental light is perceived and anticipated by organisms to synchronize their biological cycles. Therefore, artificial light at night (ALAN) disrupts both diurnal and seasonal biological rhythms. Reproduction is a complex physiological process involving integration of environmental signals by the brain, and release of endocrine signals by the pituitary that regulate gametogenesis and spawning. In addition, males from many species form a dominance hierarchy that, through a combination of aggressive and protective behavior, influences their reproductive success. In this study, we investigated the effect of ALAN and continuous daylight on the behavior and fitness of male fish within a dominance hierarchy …

Foreword: Symbiotic Perspectives On The Processes Of Biology And Art, Scott F. Gilbert

Biology Faculty Works

No abstract provided.

Process Epistemologies For The Careful Interplay Of Art And Biology: An Afterword, S. R. Gilbert, Scott F. Gilbert

Biology Faculty Works

No abstract provided.

Linking Previous Experiences To Behavior And Health In The Honey Bee (Apis Mellifera), Rebecca R. Westwick

Theses and Dissertations--Entomology

An organism’s ability to respond to changing conditions can be vital to its success. Indeed, plasticity is a common feature of living organisms. Much of the research in this area, though, has focused on effects caused by environmental conditions. What has received relatively less attention is how social experiences and broader features of an organism’s social environment can lead to long-lasting changes in health and behavior. This knowledge gap exists despite the well-documented existence of health and behavioral effects after social interactions in certain taxa such as humans.

Social insects such as honey bees provide an excellent opportunity to better …

Methods For Chromatin Immunoprecipitation Of Biomphalaria Glabrata Nf-Κb, Marissa A. Zintel

Lawrence University Honors Projects

Biomphalaria glabrata is a species of freshwater snail that is an intermediate host to the parasite Schistosoma mansoni, a causative agent of human schistosomiasis. Substantial research has focused on the B. glabrata immune system, but progress is restricted by the limited molecular tools available for molluscan organisms. While many studies have described the anti-parasitic defenses of B. glabrata, the initiation and regulation of these defenses remain unclear. One important immune regulator, well known in both human and Drosophila immunology, is nuclear factor kappa B (NF-κB). Research has shown that B. glabrata NF-κB transcripts are upregulated in response to …

Gangliogenesis And Embryonic Development In Biomphalaria Glabrata, Subhiksha Srinivasan

Lawrence University Honors Projects

Biomphalaria glabrata is an intermediate host for a parasitic species, Schistosoma mansoni, which can infect humans causing schistosomiasis. The majority of research conducted on these snails focuses on host-parasite relationships. Thus, very little is known regarding their nervous system, especially during embryonic and juvenile development. This project aims to investigate the transition from the embryonic nervous system consisting of a network of neurons to a developed ganglionic nervous system consisting of a separation between clusters of nerve cell bodies, or ganglia, and connectives. To investigate when this process, known as gangliogenesis, occurs, immunofluorescence is used to visualize the serotonergic nervous …

Have Rusty Crayfish Affected The Diets Of Yellow Perch?, Matthew D. Kvam

Journal of Earth and Life Science

Freshwater ecosystems are some of the most susceptible to invasive species. It is one of the reasons they face the highest levels of species endangerment. Rusty crayfish Faxonius rusticus are one such invasive species, they fragment food webs and negatively affect native species. However, it seems as though native species are beginning to rely on them as a source of food. Yellow perch Perca flavescens, an important forage and game species, is one such species that is highly affected by these invasions. At smaller sizes yellow perch primarily feed on invertebrates whose populations are degraded by rusty crayfish. Therefore, the …

Ser14-Rpn6 Phosphorylation Mediates The Activation Of 26s Proteasomes By Cyclic Amp And Protects Against Cardiac Proteotoxic Stress In Mice, Liuqing Yang

Dissertations and Theses

A better understanding of how proteasome activity is regulated can facilitate the search for proteasome enhancement strategies for disease treatment. A cell culture study shows cAMP-dependent protein kinase (PKA) activates 26S proteasomes by phosphorylating Ser14 of RPN6 (pS14-RPN6), but this discovery and its physiological significance remain to be established in vivo. To test the hypothesis that pS14-RPN6 mediates the activation of proteasomes by PKA and reduces proteotoxicity in animals, two knock-in mouse models with Ser14 of endogenous Rpn6 mutated to either Ala (S14A) or Asp (S14D) to respectively block or mimic pS14-Rpn6 were created. In a PKA-dependent manner, cAMP augmentation …

Predator Feeding Rates May Often Be Unsaturated Under Typical Prey Densities, Kyle E. Coblentz, Mark Novak, John Delong

School of Biological Sciences: Faculty Publications

Predator feeding rates (described by their functional response) must saturate at high prey densities. Although thousands of manipulative functional response experiments show feeding rate saturation at high densities under controlled conditions, it remains unclear how saturated feeding rates are at natural prey densities. The general degree of feeding rate saturation has important implications for the processes determining feeding rates and how they respond to changes in prey density. To address this, we linked two databases—one of functional response parameters and one on mass–abundance scaling—through prey mass to calculate a feeding rate saturation index. We find that: (1) feeding rates may …

Characterisation Of Selected Microbes In Terrestrial And Simulated Extraterrestrial Habitats: Human Health And Environmental Applications, Daniel Joseph Keaney

Theses

The rapid development of the Space industry and associated technologies over the past decade is leading to the inevitable consideration of establishing human-based colonies on extra-terrestrial bodies such as the moon and Mars. With Mars being the focus of not only this body of work, but current New Space Age travel (NASA and SpaceX), a significant issue posed by Martian colonists includes establishing a safe and sustainable food source. Owing to its constantly evolving prehistoric landscape, the soils of Mars are contaminated with sodium perchlorate, a water-soluble salt that is toxic to humans, leftover from once inferred brine seeps that …

Meta-Analysis Of The Effects Of Insect Pathogens: Implications For Plant Reproduction, Wilnelia Recart Gonzalez, Rover Bernhard, Isabella Ng, Katherine Garcia, Arietta E. Fleming-Davies

Biology: Faculty Scholarship

Despite extensive work on both insect disease and plant reproduction, there is little research on the intersection of the two. Insect-infecting pathogens could disrupt the pollination process by affecting pollinator population density or traits. Pathogens may also infect insect herbivores and change herbivory, potentially altering resource allocation to plant reproduction. We conducted a meta-analysis to (1) summarize the literature on the effects of pathogens on insect pollinators and herbivores and (2) quantify the extent to which pathogens affect insect traits, with potential repercussions for plant reproduction. We found 39 articles that fit our criteria for inclusion, extracting 218 measures of …

Cleome Serrulata, Rocky Mountain Beeweed, Uses By Native Americans, Marielle Gomez, John Ubelaker

Research

This paper examines the use of beeweed (Cleome serrulata), a native annual commonly called Rocky Mountain beeplant, as a traditional dye and paint source for pottery in Northern New Mexico.

Behavioral, Morphological And Genetic Differentiation Among Populations Of Enyaliopsis, Laura Macamo

Electronic Theses and Dissertations, 2020-2023

The study of biodiversity is a fundamental part of the study of the ecosystem's function and stability and how changes in the habitat shape the interaction between species. In recent years, the classification of species benefited from the analysis of several types of data to aid the distinction of morphologically similar species. Enyaliopsis iaculator (Naskrecki and Guta, 2019) is a species endemic to central Mozambique. Different populations of E. iaculator were reported to exhibit differences in the time of the day the mating call is displayed, but no morphological differences were reported. Since call behavior tends to be species specific …

Investigating Neuroanatomical Evolution Through Proliferative Cells In The Astyanax Mexicanus, Sophie Staeger

Pitzer Senior Theses

The Astyanax mexicanus is a single species of fish that has two very distinct morphs, the cave fish and the surface fish. 200,000 years ago, cave fish ancestors entered the dark and challenging cave environment of Mexico and were forced to adapt in order to survive. Such adaptions include larger fat reserves, more sensitive olfaction, increased neuromasts, and a unique nervous system structure. Yet, other functions regressed, as they lost their eyes and pigmentation. The Duboué lab has established a clear reciprocal relationship between the volume of structures involved in the neuronal adaptations, but the biological mechanisms underlying the development …

The Effect Of Blue Mussel (Mytilus Edulis) Extinction On Ecosystem Function In The Gulf Of Maine Rocky Intertidal, Sophia K. Montague

Honors Theses

Stressors associated with climate change including thermal stress and ocean acidification inhibit the growth and reproduction of many species, including the ecologically and economically important blue mussel species in the Gulf of Maine (GOM). Established scaling relationships between mussel size, abundance, and water filtration suggests that the decline of mussels will stunt GOM water filtration. This change in the rate of water filtration could have large effects on the abundance of phytoplankton, abundance of invertebrate larvae, abundance of nutrients and organic material, food web stability, and biodiversity. Overall, this thesis explores the effect of blue mussel (Mytilus edulis) …

Biomechanics Of Mantis Prey Capture, Danielle S. Taylor

Honors Theses

Mantis species have a variety of different morphologies, so do the extreme forms of mantis limbs trade prey catching capability for camouflage? We hypothesize that some extreme forms of mantis limbs that are associated with cryptic species may be associated with a tradeoff of the capability of those limbs. Previous research has developed 2D morphologies of several hundred species of mantises. We are creating a 3D morphology by using micro dissection, micro CT imaging to construct our 3D biomechanical model. We found the attachment points of the ligaments and muscles from a Tenodera forearm and have constructed a 2D biomechanical …

A Bioinformatics Approach For Evaluating Evolutionary Convergence Of Gene Family Size In Hematophagous Insects, Mbemba Ceesay

Theses, Dissertations and Culminating Projects

The act of blood-feeding can be nutritionally rewarding for blood-feeding arthropods. However, blood digestion can release pro-oxidant molecules such as heme and iron at potentially harmful levels. If left uncontrolled, this heme/iron can cause oxidative damage and eventually cell death. This has led to the evolution of various adaptations that protect blood-feeding arthropods against iron- and heme-associated damage. Here I postulate that the signature of this adaptation can be observed in patterns of gene family size. To test this hypothesis, I explore convergent evolutionary expansions and contractions of gene families in distinct lineages of hematophagous insects. Specifically, I compare the …

Metamorphosis Imposes Variable Constraints On Genome Expansion Through Effects On Development, R. Lockridge Mueller,, Clayton E. Cressler, R S. Schwartz, R A. Chong, M. Butler

School of Biological Sciences: Faculty Publications

Genome size varies ∼100,000-fold across eukaryotes and has long been hypothesized to be influenced by meta- morphosis in animals. Transposable element accumulation has been identified as a major driver of increase, but the nature of constraints limiting the size of genomes has remained unclear, even as traits such as cell size and rate of development co-vary strongly with genome size. Salamanders, which possess diverse metamorphic and non-metamorphic life histories, join the lung- fish in having the largest vertebrate genomes—3 to 40 times that of humans—as well as the largest range of variation in genome size. We tested 13 biologically-inspired hypotheses …

Blacktip Shark (Carcharhinus Limbatus) Jaw, Laura D. Nicolas, David W. Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

Jaw from blacktip shark (Carcharhinus limbatus)

Experimentally Broadcasted Wind-Turbine Sound Drastically Alters Songbirds' Habitat Selection And Vocal Communication In A Natural Environment, Yael Lehnardt, Tom Klein, Jesse R. Barber, Oded Berger-Tal

Biology Faculty Publications and Presentations

The sound of wind turbines is a potential threat to songbirds, who use vocal communication to transfer information and rely on acoustic cues from the environment. Previous studies have shown decreased bird density around wind-farms, but the exact causes for this decline have not yet been fully recognized. We investigated the effects of wind-turbine sound on songbird populations by deploying a "Phantom Turbine": broadcasting wind-turbine sound (102dB) at a site without actual turbines. We conducted the experiment in cycles of three stages: 'before', 'noise-treatment', and 'after'. We monitored birds' abundance using mist-netting and recorded freely-flying birds' communication and background noise …

Behavioral Diversity And Biomechanical Determinants Of The Outcome Of A Fish Predator–Prey Interaction, Milton Q.G.A., Iii, Philip Bergmann

Biology

Predator–prey interactions are ubiquitous and under strong selection because of the consequences experienced by both predator and prey if they lose the interaction. Biomechanics and behavior play important roles in the outcome of these interactions, but many studies focus on the prey, restrict the range of behaviors considered, and the role of prey boldness in the outcome is not understood. We used high-speed video to test for effects of multiple measures of performance and kinematics of both the predator and prey, and boldness of prey on the outcome of interactions between Pike Cichlids (Crenicichla sp.) and Guppies (Poecilia reticulata). We …

Transcriptomic Responses Of Females To Consumption Of Nuptial Food Gifts As A Potential Mediator Of Sexual Conflict In Decorated Crickets, Bert Foquet, James Rapkin, Manmohan D. Sharma, Ben M. Sadd, Scott K. Sakaluk, John Hunt

Faculty Publications – Biological Sciences

Nuptial food gift provisioning by males to females at mating is a strategy in many insects that is thought to be shaped by sexual conflict or sexual selection, as it affords males access to a female's physiology. While males often attempt to use these gifts to influence female behaviour to their own advantage, females can evolve counter mechanisms. In decorated crickets, the male's nuptial gift comprises part of the spermatophore, the spermatophylax, the feeding on which deters the female from prematurely terminating sperm transfer. However, ingested compounds in the spermatophylax and attachment of the sperm-containing ampulla could further influence female …