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Nitric Oxide Mediates Seasonal Muscle Potentiation In Clam Gills, Louis F. Gainey Jr., Michael J. Greenberg

Faculty Publications

The physiology and timing of gill muscle potentiation were explored in the clam Mercenaria mercenaria. When isolated demibranchs were exposed twice (with an intervening wash) to the same concentration of 5-hydroxytryptamine, the second contraction was larger than the first. This potentiation was seasonal: it was present from November through June, and absent from July through October. Potentiation was not affected by the geographic origin of the clams, nor by their acclimation temperature. Potentiation was inhibited by the nitric oxide synthase (NOS) inhibitor L-NAME and mimicked by the nitric oxide (NO) donor DEANO. During the season of potentiation, immunoreactive NOS appeared …

Regulation Of Na,K-Atpase By Plms, The Phospholemman-Like Protein From Shark: Molecular Cloning, Expression, Cellular Distribution And Functional Effects Of Plms, Yasser A. Mahmmoud, Gordon Cramb, Arvid B. Maunsbach, Christopher P. Cutler, Lara Meischke, Flemming Cornelius

Biology: Faculty Publications

In Na,K-ATPase membrane preparations from shark rectal glands, we have previously identified an FXYD domain-containing protein, phospholemman-like protein from shark, PLMS. This protein was shown to associate and modulate shark Na,K-ATPase activity in vitro. Here we describe the complete coding sequence, expression, and cellular localization of PLMS in the rectal gland of the shark Squalus acanthias. The mature protein contained 74 amino acids, including the N-terminal FXYD motif and a C-terminal protein kinase multisite phosphorylation motif. The sequence is preceded by a 20 amino acid candidate cleavable signal sequence. Immunogold labeling of the Na,K-ATPase …

Chromosome-Wide Control Of Meiotic Crossing Over In C. Elegans, Kenneth J. Hillers, Anne M. Villeneuve

Biological Sciences

A central event in sexual reproduction is the reduction in chromosome number that occurs at the meiosis I division. Most eukaryotes rely on crossing over between homologs, and the resulting chiasmata, to direct meiosis I chromosome segregation, yet make very few crossovers per chromosome pair [1] and [2]. This indicates that meiotic recombination must be tightly regulated to ensure that each chromosome pair enjoys the crossover necessary to ensure correct segregation. Here, we investigate control of meiotic crossing over in Caenorhabditis elegans, which averages only one crossover per chromosome pair per meiosis [3] and [4], by constructing genetic maps …

Biology Department Publications: 2003, Sam Lindgren

Biology Department Bibliographies

This document is a noncomprehensive list of publications made by graduate students, post-doctoral researchers, and faculty members in the Biology Department in 2003. It indexes those publications available through major databases, and serves as an archival record of the Department’s robust scholarly contributions.

Characterization Of Six Polymorphic Microsatellites For The Polychaete Tubeworm Hydroides Elegans And Cross-Species Amplification In The Congener Hydroides Hexagonus, J. B. Pettengill, M. G. Hadfield, M. D. Schug, D. E. Wendt

Biological Sciences

We isolated and characterized six polymorphic microsatellite loci for the polychaete tubeworm, Hydroides elegans. Two additional loci were not reliably scorable and estimates of heterozygosity were obtained for the other six. In addition, cross-species amplification was successful for two loci using the congener H. hexagonus. Given that few microsatellite loci are available for polychaetes, these markers will be useful in assessing dispersal and gene flow in H. elegans and probably also other polychaetes.

Differences In Hyporheic-Zone Microbial Community Structure Along A Heavy-Metal Contamination Gradient, Kevin P. Feris, Philip W. Ramsey, Frazar Chris, Johnnie N. Moore, James E. Gannon, William E. Holben

Biological Sciences Faculty Publications

Heavy metals contaminate numerous freshwater streams and rivers worldwide. Previous work by this group demonstrated a relationship between the structure of hyporheic microbial communities and the fluvial deposition of heavy metals along a contamination gradient during the fall season. Seasonal variation has been documented in microbial communities in numerous terrestrial and aquatic environments, including the hyporheic zone. The current study was designed to assess whether relationships between hyporheic microbial community structure and heavy-metal contamination vary seasonally by monitoring community structure along a heavy-metal contamination gradient for more than a year. No relationship between total bacterial abundance and heavy metals was …

Selective Plating Underestimates Abundance And Shows Differential Recovery Of Bifidobacterial Species From Human Feces, Juha H. A. Apajalahti, Anu Kettunen, Päivi H. Nurminen, Hanna Jatila, William E. Holben

Biological Sciences Faculty Publications

The aim of the present work was to compare the efficacies and levels of selectivity of different culture-dependent and -independent methods for analyzing bifidobacteria in human stool samples. The three different culture media used here significantly differed from each other, particularly with regard to the recovery of Bifidobacterium adolescentis. Bifidobacterium medium failed to recover B. adolescentis; Beerens medium recovered some B. adolescentis organisms (17% of total bifidobacteria), whereas tomato-Eugon medium recovered mainly B. adolescentis organisms (58% of total bifidobacteria). A culture-independent method that combines GC fractionation of bacterial community DNA and 16S rRNA sequencing indicated that B. adolescentis organisms accounted …

Monitoring Immediate-Early Gene Expression Through Firefly Luciferase Imaging Of Hrs/J Hairless Mice, Michael E. Geusz, Anne M. Collaco

Biological Sciences Faculty Publications

Background: Gene promoters fused to the firefly luciferase gene (luc) are useful for examining gene regulation in live transgenic mice and they provide unique views of functioning organs. The dynamics of gene expression in cells and tissues expressing luciferase can be observed by imaging this enzyme's bioluminescent oxidation of luciferin. Neural pathways involved in specific behaviors have been identified by localizing expression of immediate-early genes such as c-fos. A transgenic mouse line with luc controlled by the human c-fos promoter (fos::luc) has enabled gene expression imaging in brain slice cultures. To optimize imaging of immediate-early gene expression throughout intact mice, …

Metabolic Responses Of Shorebird Chicks To Cold Stress: Hysteresis Of Cooling And Warming Phases, Robert Ricklefs, Joseph Williams

Biology Department Faculty Works

We developed a protocol for determining the maximum rate of oxygen consumption of shorebird chicks (Scolopacidae and Charadriidae) in response to cold challenge. We first subjected the chicks to gradually decreasing temperatures until their metabolism peaked and began to decrease. We ended the cooling phase of a trial when a chick’s body temperature Tb had declined typically to 32–34°C. After this point, we gradually increased the temperature in the metabolism chamber until normal Tb values and thermoneutral resting metabolism were restored. We refer to this cycle as the down–up (DU) protocol. We estimated instantaneous oxygen consumption (V . O∑) using …

Phenotype Management: A New Approach To Habitat Restoration, Jason V. Watters, Sean C. Lema, Gabrielle A. Nevitt

Biological Sciences

The goal of habitat restoration is to provide environmental conditions that promote the maintenance and growth of target populations. But rarely is it considered how the allocation of resources influences the diversity of phenotypes in these populations. Here we present a framework for considering how habitat restoration can shape the development and expression of phenotypes. We call this approach phenotype management as it entails restoring the resources in a habitat to manage phenotypic diversity. Phenotype management is achieved by manipulating the spatial and temporal distribution of resources to alter the degree of competition among individuals. Differences in competition, in turn, …

Lipopolysaccharide Induced Septicemia In Chronic Morphine Treated Rats, Frank Ocasio

Seton Hall University Dissertations and Theses (ETDs)

Opiate-addicts have been known to show increased susceptibility to bacterial infection. Lipopolysaccharide (LPS), which is a cell wall component in gram-negative bacterial, is a potent stimulator of inflammation. We investigated how treatment with morphine alters LPS-induced inflammatory responses in the rat. Chronic morphine exposure alone elevated serum endotoxin levels. Animals treated with morphine and LPS (250 µglkg) developed hypothermia, decreased mean arterial pressure (MAP), increased plasma thrombin anti-thrombin III (TAT) complex, and approximately 67% exhibited progressive intramicrovascular coagulation. Morphine also enhanced LPS­ induced leukocyte endothelial adhesion (LEA), suppressed leukocyte flux and corticosterone production, and elevated interleukin- I�, tumor necrotic factor-a, …

Molecular Pharmacology Of Somatostatin Receptors, Fredric C. Mazza

Seton Hall University Dissertations and Theses (ETDs)

Somatostatin (somatotropin release inhibitory factor, SRIF), inhibits animal cell secretion and proliferation. SRIF is transcribed from a single gene as a 1 t 6 amino acid that in precursor is cleaved a cell specific manner into two distinct peptides, SRIF-14 and SRIF-28. Each binds with high affinity to all five known SRIF-receptor subtypes (sst, - ssts) and several of these receptor subtypes are endogenously expressed in the AtT-20 cell, a murine pituitary corticotroph. SRIF receptors belong to the G protein-coupled family of integral membrane receptors. Within the SRIF receptor family, it has been shown that the sst, receptor subtype exists …

The Galapagos Giant Tortoise (Geochelone Elephantopus) And The Spread Of Invasive Plants, Anne D. Schultz

Biology ETDs

Island ecosystems are commonly thought to be more vulnerable to the effects of invasive species than mainland systems. In recent decades, the number of exotic plants known to be present in the Galapagos archipelago has increased exponentially. Several of these plants are aggressive invaders that pose a threat to the biodiversity of the islands. Two of these plant species, Passiflora edulis Sims and Psidium guajava L. were introduced to Santa Cruz Island during the 20th century. Both pose a threat to the floristic diversity of the National Park land on Santa Cruz Island.

This paper explores the role played by …

Matgat: An Application That Generates Similarity/Identity Matrices Using Protein Or Dna Sequences, James Campanella, Ledion Bitincka, John Smalley

Department of Biology Faculty Scholarship and Creative Works

Background: The rapid increase in the amount of protein and DNA sequence information available has become almost overwhelming to researchers. So much information is now accessible that high-quality, functional gene analysis and categorization has become a major goal for many laboratories. To aid in this categorization, there is a need for non-commercial software that is able to both align sequences and also calculate pairwise levels of similarity/identity. Results: We have developed MatGAT (Matrix Global Alignment Tool), a simple, easy to use computer application that generates similarity/identity matrices for DNA or protein sequences without needing pre-alignment of the data. Conclusions: The …

Insect-Mediated Pollination In Slickspot Peppergrass, Lepidium Papilliferum L. (Brassicaceae), And Its Implications For Population Viability, Ian Robertson, Danielle Klemash

Biology Faculty Publications and Presentations

Field experiments on the pollination biology of slickspot peppergrass, Lepidium papilliferum L. (Brassicaceae), a rare species endemic to microsites in sagebrush-steppe habitat in southwestern Idaho, were conducted at 2 sites from May to July 2001. Site KB contained over 10,000 plants, whereas site WG contained less than 150 plants. Insect exclusion experiments revealed that seed production in L. papilliferum is dependent on insect-mediated pollination; median percent seed set dropped from 70% to 2% when insects were excluded from flowers. A total of 25 insect families from 5 orders visited L. papilliferum flowers: 24 families at KB and 11 families at …

On Temporal Variation And Conflicting Selection Pressures: A Test Of Theory Using Newts, Jason R. Rohr, Dale M. Madison, Aaron M. Sullivan

Faculty Publications - Department of Biological & Molecular Science

Most studies that examine conflicting selection pressures hold resources and risks constant, despite their ubiquitous fluctuation. Since little is known about the consequences of neglecting this variation, we examined the temporal response of male red-spotted newts, Notophthalmus viridescens, to conflicting female pheromones and damage-release alarm chemicals signaling predation. After a single exposure in both the laboratory and field, males were attracted to female odor and avoided conspecific alarm chemicals. Response to these combined cues depended on time after exposure, with males initially avoiding, and then being attracted to, the cue combination. This response shift was due to the resource and …

Developmental Toxicity Of Atrazine And Copper Sulfate Using The Frog Embryo Teratogenesis Assay-Xenopus (Fetax), Misty D. Hamilton

Morehead State Theses and Dissertations

A thesis presented to the faculty of the College of Science and Technology at Morehead State University in partial fulfillment of the requirements for the Degree of Master of Science by Misty D. Hamilton on June 25, 2003.

Life-History Variation In The Sagebrush Lizard (Sceloporus Graciosus): Phenotypic Plasticity Or Local Adaptation?, Michael W. Sears

Publications

We performed a laboratory common-environment study to determine the genetic and environmental sources of variation in growth rates of the sagebrush lizard (Sceloporus graciosus). Hatchling lizards were reared from gravid females collected from three study populations along an elevational gradient in southern Utah, USA. Hatchlings were fed ad libidum and were maintained on a 14:10 light:dark cycle, with temperatures at 33°C and 21°C during photophase and scotophase, respectively. Each hatchling was randomly assigned to either a water-supplementation treatment or a control group receiving no supplemental water. Once every five days, the water-supplemented lizards were administered orally a quantity …

Cellular Proliferation, Death And Histology In Gambusia Affinis Livers After Exposure To 2-Aminofluorene And Benzidine, Susan J. Lentz

Dissertations

A fundamental need exists for aquatic animals in the biomonitoring of aquatic ecosystems for environmental carcinogens. G. affinis, a small fish species, is selected for this study due to its hardiness, non-migratory nature, geographic diversity and ability to develop tumors. Molecular tools for cellular proliferation and death are examined for use with G. affinis. Additionally, these tools are used to investigate the early carcinogenic effects of 2-aminofluorene and benzidine, both individually and combined, on G. affinis livers.

Antibodies to proliferating cell nuclear antigen (PCNA), p53, cleaved caspase-3 and cleaved poly(ADP-ribose) polymerase (PARP) were examined for use in G. …

Life Cycle Of A Torrenticolous Hawaiian Chironomid (Telmatogeton Torrenticola): Stream Flow And Microhabitat Effects, M. Eric Benbow, Albert J. Burky, Carl M. Way

Biology Faculty Publications

In this study we documented the instar densities and life cycle of Telmatogeton torrenticola Terry (Chironomidae : Telmatogetoninae) from Kinihapai Stream, Maui, Hawaii. Greatest larval densities of this midge are found on substrates of high velocity, shallow flows of cascades, and splash zones of waterfalls, with lower densities in riffles. In the summer of 1994 we compared the effects of two microhabitats (termed optimal and suboptimal) on inter-instar density and relative abundance. In a second year (1995), we evaluated the effect of long-term reduced stream flow on these variables only in optimal microhabitats. A significant reduction in stream flow from …

On Water Bears, Frank A. Romano Iii

Research, Publications & Creative Work

Tardigrades, or “water bears” are microscopic invertebrates that require water in their environment and are found in freshwater, marine and terrestrial habitats. The morphology and phylogeny of this “little known phylum” is described as are ways the naturalist might collect water bears. Examples of species distributions in different locations in the southeastern USA are given.

Predators And Life Histories Shape Lestes Damselfly Assemblages Along A Freshwater Habitat Gradient, Robby Stoks, Mark A. Mcpeek

Dartmouth Scholarship

Survey data from New England showed that assemblages of Lestes damselflies are organized along the entire gradient of pond permanence and predator presence. One assemblage occupies vernal ponds lacking large dragonfly predators and fish; four are largely confined to temporary ponds that typically contain dragonfly predators; one dominates fishless permanent ponds and lakes where dragonflies are the top predators; and one dominates permanent ponds and lakes where fish are the top predators. We determined the role of life history and predation in maintaining this striking pattern by conducting a series of transplant experiments in the field and a laboratory experiment …

Enhancer Trapping Reveals Widespread Circadian Clock Transcriptional Control In Arabidopsis, Todd P. Michael, C Robertson Mcclung

Dartmouth Scholarship

The circadian clock synchronizes the internal biology of an organism with the environment and has been shown to be widespread among organisms. Microarray experiments have shown that the circadian clock regulates mRNA abundance of about 10% of the transcriptome in plants, invertebrates, and mammals. In contrast, the circadian clock regulates the transcription of the virtually all cyanobacterial genes. To determine the extent to which the circadian clock controls transcription in Arabidopsis, we used in vivo enhancer trapping. We found that 36% of our enhancer trap lines display circadian-regulated transcription, which is much higher than estimates of circadian regulation based on …

Is Hp1 An Rna Detector That Functions Both In Repression And Activation?, Rebecca Kellum

Biology Faculty Publications

Heterochromatin is defined as regions of compact chromatin that persist throughout the cell cycle (Heitz, 1928). The earliest cytological observations of heterochromatin were followed by ribonucleotide labeling experiments that showed it to be transcriptionally inert relative to the more typical euchromatic regions that decondense during interphase. Genetic studies of rearrangements that place euchromatic genes next to blocks of heterochromatin also pointed out the repressive nature of heterochromatin (Grigliatti, 1991; and references therein). The discovery of the heterochromatin-enriched protein heterochromatin protein 1 (HP1) by Elgin and co-workers in the mid-1980s suggested that the distinct cytological features of this chromatin may be …

Analysis Of Intermolecular Rna-Rna Recombination By Rubella Virus, Sandra Adams, Wen Pin Tzeng, Min Hsin Chen, Teryl K. Frey

Department of Biology Faculty Scholarship and Creative Works

To investigate whether rubella virus (RUB) undergoes intermolecular RNA-RNA recombination, cells were cotransfected with pairs of in vitro transcripts from genomic cDNA plasmid vectors engineered to contain nonoverlapping deletions: the replicative transcript maintained the 5′-proximal nonstructural (NS) ORF (which contained the replicase, making it RNA replication competent), had a deletion in the 3′-proximal structural protein (SP) ORF, and maintained the 3′ end of the genome, including the putative 3′ cis-acting elements (CSE), while the nonreplicative transcript consisted of the 3′ half of the genome including the SP-ORF and 3′ CSE. Cotransfection yielded plaque-forming virus that synthesized the standard genomic and …

Life History Of The Northern Madtom, Noturus Stigmosus (Siluriformes: Ictaluridae), In The Licking River, Kentucky, Jonathan F. Scheibly

Morehead State Theses and Dissertations

A thesis presented to the faculty of the College of Science and Technology at Morehead State University in partial fulfillment of the requirements for the Degree of Master of Science by Jonathan F. Scheibly on May 9, 2003.

Host Defense Mechanisms In The Crayfish: The Effect Of Injection With Live Or Killed Bacteria., Kimberly R. Goins

Electronic Theses and Dissertations

An increase in attachment of SRBCs to Procambarus clarkii hemocytes has been shown after the crayfish were injected with a live or killed Pseudomonas strain RS2b. The increase in attachment occurred at 8 hours post injection and peaked at 24 hours for both experimental groups. The population of hemocytes with receptors for LPS and mannose also increased at 8 hours post injection and peaked at 24 hours for both experimental groups. At 96 hours post injection the number of receptor bearing hemocytes and hemocytes bound to SRBCs began to decrease to the level of the control for both groups. The …

Photodynamic Therapy, Ashley Thomas

McCabe Thesis Collection

Photodynamic therapy is a new treatment that is being introduced into the veterinary community. Photodynamic therapy is the use of light activated chemotherapy to kill cancer cells (Dougherty, 1998). It has already been approved by the US Food and Drug Administration to be used as a form of cancer treatment in humans, but has not been carried over to the veterinary community. That is until now. Photodynamic therapy is now being tested in the veterinary community in hopes to find the same results that the human medical community has when dealing with certain types of cancer. They also hope to …

The Role Of Pleckstrin Homology Domains In Phosphoinositide Binding, Evan D. Christensen

Biology

Phosphoinositides are membrane-bound lipids that exist as eight different isoforms resulting from the phosphorylation of their inositol head group at three distinct positions. Proteins with Pleckstrin Homology (PH) domains bind to phosphoinositides involved in the regulation of cellular processes. The binding of several yeast PH domains to phosphoinositides was examined using dot-blot overlay assays, Surface Plasmon Resonance, and in vivo localization methodologies. While most of these yeast PH domains exhibited low specificity and/or low binding affinity, several proteins showed strong in vivo localization to either the plasma membrane or the Golgi membrane in mammalian cells. The role of the YPR115 …

The Behavioral And Chemical Ecology Of A Predator That Consumes Toxic Prey, Becky L. Williams

Biology

The Common Garter Snake (Thamnophis sirtalis) preys upon the Rough-skinned Newt (Taricha granulosa), which contains tetrodotoxin (TTX). I investigated how snakes consume potentially deadly newts and the consequences thereof. Individual snakes assess their resistance relative to newt toxicity and reject prey too toxic to consume. Behavioral moderation of toxin exposure provides the association between individual resistance and fitness necessary for the coevolution of lethal toxins and resistance. After newt consumption, snakes experience tremendous toxin loads. Because TTX is extremely toxic, present in large quantities in newts, and highly resistant snakes ingest multiple newts, snakes can harbor …