Digital Commons Network^™

Developing A Novel Assay For Quantifying Allelopathy Tolerance In Soybeans To Pennycress Glucosinolates In A Controlled Environment, A. Jonaus

Biology Honors Projects

In a pennycress (Thlaspi arvense L.) and soybean (Glycine max L.) relay-cropping system, one concern for farmers is the effects of pennycress allelochemicals on soybean growth and yield. Pennycress root exudates are known to contain sinigrin, a glucosinolate which hydrolyzes to form the harmful compound allyl isothiocyanate (AITC). In addition to serving as defense against herbivory, glucosinolates are also known to have allelopathic effects on surrounding plants by possibly affecting traits like germination, biomass accumulation, nutrient uptake, mycorrhizal symbioses, and nitrogen fixation. This is not ideal in a relay cropping system, where the presence of pennycress can decrease soybean yields …

Monitoring Selenium Bioaccumulation In False Map Turtles (Graptemys Pseudogeographica), Grant M. Budden

Honors Thesis

Selenium is an element that becomes bioactivated in aquatic environments. Selenium bioaccumulation may threaten a South Dakota state-threatened species, the False Map Turtle (Graptemys pseudogeographica). Invertebrate filter feeder species like zebra mussels (Dreissena polymorpha) uptake selenium via exposure. Previous laboratory work has found that False Map Turtles consume large amounts of zebra mussels throughout the summer, leading to selenium bioaccumulation from selenium transfer from prey to predator. A myriad of adverse effects, like selenosis, reproductive infertility, and death, are associated with high selenium concentrations. Sampling was completed on False Map Turtles in the summer of 2022. …

Ablation Of Sam50 Is Associated With Fragmentation And Alterations In Metabolism In Murine And Human Myotubes, Bryanna Shao, Mason Killion, Ashton Oliver, Chia Vang, Faben Zeleke, Kit Neikirk, Zer Vue, Edgar Garza‐Lopez, Jian‐Qiang Shao, Margaret Mungai, Jacob Lam, Qiana Williams, Christopher T. Altamura, Aaron Whiteside, Kinuthia Kabugi, Jessica Mckenzie, Maria Ezedimma, Han Le, Alice Koh, Estevão Scudese, Larry Vang, Andrea G. Marshall, Amber Crabtree, Janelle I. Tanghal, Dominique Stephens, Ho‐Jin Koh, Brenita C. Jenkins, Sandra A. Murray, Anthonya T. Cooper, Clintoria Williams, Steven M. Damo10 M. Damo, Melanie R. Mcreynolds, Jennifer A. Gaddy Gaddy, Celestine N. Wanjalla, Heather K. Beasley, Antentor Hinton Jr.

Biology Faculty Research

The sorting and assembly machinery (SAM) Complex is responsible for assembling β‐barrel proteins in the mitochondrial membrane. Comprising three subunits, Sam35, Sam37, and Sam50, the SAM complex connects the inner and outer mitochondrial membranes by interacting with the mitochondrial contact site and cristae organizing system complex. Sam50, in particular, stabilizes the mitochondrial intermembrane space

bridging (MIB) complex, which is crucial for protein transport, respiratory chain complex assembly, and regulation of cristae integrity. While the role of Sam50 in mitochondrial structure and metabolism in skeletal muscle remains unclear, this study aims to investigate its impact. Serial block‐face‐scanning electron microscopy and computer‐assisted …

Determining The Role Of Ddr2 In Acquired Chemo-Resistance In Ovarian Cancer, Alyssa Oplt

Arts & Sciences Graduate Student Theses and Dissertations

Ovarian cancer is the 5th leading cause of cancer death in women with a 5-year survival rate around 30%. Up to 80% of ovarian cancer patients experience disease recurrence and the majority of those cases are resistant to treatment. Therefore, there is a need to understand the mechanisms of chemo-resistance in order to create new therapies and increase patient survival. To accomplish this, I first developed novel, chemo-resistant, syngeneic mouse ovarian cancer cell lines by serial passaging ovarian cancer cells through mice and treating with increasing doses of chemotherapy. These cell lines fill a need in the field for matched …

Dissecting The Role Of Chromatin Remodeling In Direct Lineage Reprogramming, Kunal Jindal

Arts & Sciences Graduate Student Theses and Dissertations

Direct reprogramming, the direct forced conversion of one somatic cell type to another has widespread applications in regenerative medicine. Owing to its highly complex nature, discovery and validation of new factors for direct reprogramming is challenging and many current protocols suffer from low conversion efficiency, failing to create mature cell types comparable to their in vivo counterparts. Recent advances in single-cell have coupled cell ancestry and transcriptomic state measurement in single-cell RNA sequencing (scRNA-seq) assays. In reprogramming and development, these have allowed mapping lineage specific transcriptional changes both before and during cell fate specification. These methods work by encoding lineage …

Circ-Mettl15 Stimulates The Aggressive Behaviors Of Papillary Thyroid Cancer Cells By Coordinating The Mir-200c-3p/Xiap Axis, Yuhao Huang, Xinyu Zeng, Yanling Cai, Yan Yang, Yujie Zhang, Yiqi Ma, Suping Li

Turkish Journal of Biology

Background and objective: Thyroid cancer is the most common malignant tumor in the endocrine system. Papillary thyroid carcinoma (PTC) accounts for the vast majority of cases in this cancer. Recently, the vital role of circular RNA (circRNA) has been acknowledged in various cancers. However, to date, few studies have examined the roles of circRNAs in PTC. Therefore, this research aimed at exploring the function and mechanism of circ-methyltransferase-like 15 (METTL15) in PTC cells.Methods: First, quantitative measurements of circ-METTL15, miR-200c-3p, and X-linked inhibitor of apoptosis protein (XIAP) in PTC cells were completed with reverse transcription-quantitative polymerase chain reaction or Western blot …

Mir-770-5p-Induced Cellular Switch To Sensitize Trastuzumab Resistant Breast Cancer Cells Targeting Her2/Egfr/Igf1r Bidirectional Crosstalk, Senem Noyan, Bala Gür Dedeoğlu

Turkish Journal of Biology

Background/aim: Studies highlighted the bidirectional crosstalk between the HER family members in breast cancer as resistance mechanism to anti-HER agents. Cross-signaling between HER2/EGFR and ER/IGF1R could play role in the development of resistance to therapeutics hence stimulating cell growth. To overcome this resistance, combined therapies targeting both pathways simultaneously have been proposed as an effective strategy. The involvement of miRNAs in resistance of targeted therapies like trastuzumab was demonstrated in recent studies. Hence the regulation of miRNAs in resistance state could reverse the cell behaviour to drugs. Previously we found that overexpression of miR-770-5p downregulated AKT and ERK expression through …

How Dna Reveals God’S Design, Alan L. Gillen

Faculty Publications and Presentations

Codes are big in today’s world: QR codes, barcodes, computer codes, cell phone codes, and more. Specific information is needed to identify, diagnose, and inform. DNA is the code for life: microbes, plants, parasites, animals, and man. DNA Day is April 25 because it was this day in history (April 25, 1953) when James Watson and Francis Crick described DNA as the double helix and the code for life. Although we consider DNA the genetic blueprint for life, it has only been known for 80 years. On February 1, 1944, Oswald Avery, Colin MacLeod, and Maclyn McCarty wrote a revolutionary …

Quantifying How Natural History Traits Contribute To Bias In Community Science Engagement: A Case Study Using Orbweaver Spiders, John Deitsch, Angela Chuang, David R. Nelsen, Michael Sitvarin, David Coyle

Achieve

Online citizen science platforms can be crucial to the scientific and regulatory community, but inherent biases based on organism traits can influence the likelihood of a species being reported and accurately identified. We explored how traits of orb weaving spiders impact data in iNaturalist, using the invasive Jorō spider as a case study. This species is an outlier among orbweavers due to its large size and bright coloration, and was the most frequently reported species, with the most identifications and research-grade observations. It was also reported by less experienced users on average, highlighting its potential role as a gateway species …

Transitive Inference In Rats, Jose Pena '25, Laura Betances '25, Yamilet Nieves Vega '26, Tess Cody '25, Conor Ollendike '26, Ashley Sawtelle '26, Margaret Low '24

Biology Student Scholarship

Jose Pena ’25 Neuroscience major
Laura Betances ’25 Biology major, community health minor
Yamilet Nieves ’26, Neuroscience and Health Policy and Management major
Tess Cody ’25, Neuroscience major
Conor Ollendike ’26, Psychology and Biology major
Ashley Sawtelle ’26, Psychology major
Margaret Low ’24, Psychology and Health Policy and Management major
Faculty Mentor: Dr. Victoria Templer, Neuroscience

Microplastic Quantification On The Effect Of Endoparasite Communities In Florida Seabirds, Sarah N. Prieto

All HCAS Student Capstones, Theses, and Dissertations

Microplastics are being studied in a variety of different projects to better understand their impact and threat to wildlife species. Although there is an understanding that microplastics are affecting our wildlife, there are still questions about how coastal seabirds come to ingest them and how the ingestion is altering critical biological processes, such as that for endoparasite communities. This project aims to determine a better understanding of two main objectives: assessment of the presence of secondary ingestion of microplastics in coastal seabirds due to the fish species they prey on and relationship between microplastics and endoparasite communities' structure and state …

Development And Structure Of Spinal Interneuron Connectivity In Larval Zebrafish, Saul Bello Rojas

Arts & Sciences Graduate Student Theses and Dissertations

In vertebrates, spinal interneurons are essential for the initiation and propagation of locomotor activity with each class of interneurons serving its own unique role. Ipsilateral interneurons function to control locomotor speed; whereas, commissural interneurons aid in left – right alternation. To date, most studies have been aimed at studying the impact of each individual class of interneurons onto motor neurons. However, not much work has revolved around studying interneuron – interneuron connectivity among the various cardinal classes. Furthermore, it remains unknown how the connectivity of interneurons changes along their entire axonal reach. This thesis aims to address the developmental patterns …

Effective Dispersal Patterns In Prairie Plant Species Across Human-Modified Landscapes., Elizabeth C. Hendrickson, Mitchell B. Cruzan

Biology Faculty Publications and Presentations

Effective dispersal among plant populations is dependent on vector behaviour, landscape features and availability of adequate habitats. To capture landscape feature effects on dispersal, studies must be conducted at scales reflecting single-generation dispersal events (mesoscale). Many studies are conducted at large scales where genetic differentiation is due to dispersal occurring over multiple generations, making it difficult to interpret the effects of specific landscape features on vector behaviour. Genetic structure at the mesoscale may be determined by ecological and evolutionary processes, such as the consequences of vector behaviour on patterns of gene flow. We used chloroplast haplotypes and nuclear genome SNP …

Exploring Neural Patterns: Rat Brain Activation During A Transitive Inference Task, Yamilet Nieves Vega '26

Biology Student Scholarship

Yamilet Nieves ’26, Neuroscience and Health Policy and Management major
Faculty Mentor: Dr. Victoria Templer, Neuroscience

Monotypic: Evolution And Adaptations Of The World's Most Distinctive Species, Emerson Harman, Amanda Almon

STEM Student Research Symposium Posters

"Monotypic: Evolution and Adaptations of the World’s Most Distinctive Species" is a BFA and Honors Capstone exhibition focused on introducing the public to the unique qualities of plants and animals that are the sole extant representative of their taxonomic family or higher classification. The exhibition is centered around the use of illustrative infographics to effectively deliver scientific information in an engaging manner to a wide audience. "Monotypic" explores the individual evolutionary adaptations that make each of these lineages so distinct from any of their living relatives while also touching on the interactions with their environments, relationships with other species, and …

Assessment Of Thermal Preferences And Critical Temperature Tolerance Polygons On Mangrove Fish And Invertebrates From South Florida, Jailynn Konkler

All HCAS Student Capstones, Theses, and Dissertations

Mangroves serve as important nursery habitats for several species of subtropical fishes and invertebrates. Southeastern Florida mangrove environments have experienced an increasing frequency of strong hot and cold weather front systems, but little information is known about the temperature thresholds for mangrove-associated prey species that lethally disrupts homeostasis. To assess the vulnerability of mangrove-associated prey species to these short-duration temperature fluctuations, critical thermal methodology (CTM) was used to determine thermal tolerances for two fishes and two invertebrates, using loss of equilibrium (LOE) as the endpoint to determine CTmax and CTmin values as a survivable proxy for death. Physiological tolerances were …

Evolution Of The Human Eye: As Compared To Other Vertebrates, Madison Queener

Honors Projects

There are three different types of eyes, the simple eye, the compound eye, and the camera eye (Cambridge Dictionary) (Myer-Rochow, 2014) (UCL, 2020). The retina of the eye has evolved and adapted to fit the lifestyles of the respective organisms. Because of this part of the eye, organisms are able to see different colors and use light to define the world using photoreceptors. Photoreceptors are rod cells, which are light sensitive and process light, and cone cells, which perceive the different color wavelengths, that pass visual information to the brain (Kazilek, 2010). About 5% of the photoreceptors in the retinas …

Exploration Of Enterococcus Faecalis Bacteriophages Diversity: Comprehensive Phylogenetic Analysis And Discovery Isolation Of Enterococcus Faecalis Phage From A Soil Sample In South Florida, Hailey N. Jauernick

All HCAS Student Capstones, Theses, and Dissertations

Enterococcus faecalis is a commensal bacterium found in the gastrointestinal tract, oral cavity, and vagina of humans, which can transition to pathogenic states, leading to diverse infections. Many E. faecalis infections are becoming progressively challenging to treat, stemming from the lack of effective antibiotic therapies against its virulence factors, including biofilm formation and antibiotic resistance. Phage therapy emerges as a promising alternative, targeting bacteria with minimal impact on host flora. However, despite phages' ubiquitous presence and potential applications in medicine and biotechnology, their diversity and ecological niches are vastly understudied. Here, we investigated the diversity of sequenced E. faecalis phages …

Inferring Function From Form: Subcortical Projection Cell Types In Rat Orbitofrontal Cortex, Suelynn Ren

Arts & Sciences Graduate Student Theses and Dissertations

Frontal cortex supports sophisticated behaviors by controlling phylogenetically older subcortical brain regions. Within the deep layers of cortex, subcortically projecting pyramidal neurons integrate local and long-range inputs along the entire depth of the cortical column. How subcortically projecting neurons might be fractionated into cell types and how their unique features constrain top-down communication is unknown. In this dissertation, I first established the output circuit architecture of subcortically projecting neurons in rat orbitofrontal cortex at a cellular resolution. I found that subcortically projecting neurons preferentially innervated a single target, demonstrating a one-neuron-one-target projection logic. Such target-defined projection neurons were molecularly distinct …

Depletion Of Protein Phosphatase 1 Results In Persistent Activation Of The Integrated Stress Response And Age-Associated Exacerbation Of Pulmonary Veno-Occlusive Disease, Amit Prabhakar, Meetu Wadhwa, Prajakta Ghatpande, Rahul Kumar, Brian B. Graham, Giorgio Lagna, Akiko Hata

Biology

Pulmonary veno-occlusive disease (PVOD) is a form of pulmonary hypertension that affects individuals across the age spectrum. PVOD is characterized by the obstruction of small pulmonary vessels, causing increased pulmonary artery (PA) pressure and leading to right ventricular heart (RV) failure. Previous research showed that the administration of Mitomycin-C (MMC) in rats mediates PVOD through the activation of the eukaryotic initiation factor 2 (eIF2) kinase PKR and the integrated stress response (ISR), resulting in the impairment of vascular endothelial junctional structure and barrier function. In this study, we reveal that older rats experience more severe pulmonary vascular remodeling and RV …

Spotted Eagle Ray (Aetobatus Narinari) Jaw, Lili M. Mcelhill, Alison G. Novara, David W. Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

No abstract provided.

Investigating A Family Of Fungal Pseudopeptidases With Bioinformatics Tools, Andy Zhao

Honors Theses

Enzymes catalyze chemical reactions; however, some proteins related to enzymes lack enzyme activity. To investigate changes that occur as enzymes becomes pseudoenzymes, I studied a unique family of fungal carboxypeptidases. I identified all fungal carboxypeptidase protein sequences in the NCBI database, constructed an alignment and phylogenetic tree for sequence comparison, and used Alphafold2 for 3D modeling of representative proteins. Fourteen unique groups were identified. All fungal proteins selected are separated into 3 categories, predicted to be active, intermediate, and inactive, respectively. Proteins predicted to be pseudoenzymes contained additional loops in mutation hotspots not found in predicted active enzymes. This research …

Alleviating Environmental Stresses In Native Arkansas Plants By Arbuscular Mycorrhizal Fungi Inoculation, Rebecca C. Morse

ATU Scholars Symposium

The rapid human-driven changes in the environment during the Anthropocene have placed extreme stress on many native plants and animals. Beneficial interactions with microorganisms may be crucial for ameliorating these stressors and facilitating the ecosystem services host organisms provide. The role of an important mutualistic association with arbuscular mycorrhizal fungi (AMF) in the competitive ability and successful adaptation of Arkansas native species by enhancing nutrient uptake has not been previously considered. Analysis of field root and soil samples from the native species in their native range as well as a controlled green-house experiment will be conducted to determine the level …

Changes In Animal Vocalizations In Response To A Total Solar Eclipse, Colton W. Morris

ATU Scholars Symposium

My proposed research project will study the changes in animal vocalizations in response to the total solar eclipse that will take place in Russellville, Arkansas, on April 8, 2024. I will use audio recordings before, during, and after the eclipse to quantify changes in animal vocalizations. Most recordings will be in the range of normal hearing, and will primarily detect birds, frogs, and insects. Additionally, I will deploy one ultrasonic recorder capable of detecting bats. From these recordings I will be able to quantify overall and species-specific call rates. Audio recordings will be paired with continuous measurements of light intensity …

Molecular Methods Used To Identify A New Species Of Dictyocaulus (Family Dictyocaulidae) In White-Tailed Deer, Garit T. Wollan, Elisa M. Quevedo

Research & Creative Achievement Day

Lungworms (Dictyocaulus) are a type of parasitic nematode found in the lungs of vertebrates and can cause life threatening diseases to their host(s). Dictyocaulus is a type of lungworm found in cattle (Bos taurus), deer (Cervidae), goat (Capra aegagrus hircus), sheep (Ovis aries), and horses (Equus caballus). The purpose of this study was to use DNA analysis to distinguish between different species of Dictyocaulus among cattle, white-tailed deer (Odocoileus virginianus), and red deer (Cervus elaphus). Adult lungworms were collected from the lungs of cattle from research farms in Missouri, Wisconsin, and Mississippi, from the lungs of red deer from a …

Carbon Sequestration And Its Role In Mitigating Climate Change, Mallory Woodward

ATU Scholars Symposium

Carbon sequestration is when carbon dioxide is stored in ecosystems like grasslands forests, soils and oceans. Wetlands are one of the many important ecosystems that sequester carbon and act as a carbon sink. The U.S. Energy Information Administration estimates that in 2019 33,621.5 million metric tons of carbon were released into the atmosphere globally, due to human emissions. Anthropogenic carbon emissions have rapidly increased over the past 150 years. Since 1982, The global rate of warming is more than three times as fast, currently rising 0.36 degrees Fahrenheit each decade, and the rate will continue to increase. How do wetlands …

Detection Of Lyme's Disease Caused By Borrelia Burgdorferi In Ixodes Scapularis Using A Pcr Multiplex And Real-Time Pcr, Emily T. Dittman, Bethany G. Basile

Research & Creative Achievement Day

Ixodes scapularis (deer ticks) are a vector for the bacterium Borrelia burgdorferi that is known to cause Lyme's Disease in animals and humans (Homo sapiens). In the past few years, there has been an increase in the prevalence of Lyme's Disease cases throughout the midwestern United States indicating that many ticks have been infected with B. burgdorferi. Using I. scapularis DNA samples collected from white-tailed deer (Odocoileus virginianus) in the spring of 2006 from Buffalo County, WI and Winona County, MN, both traditional and real-time PCR methods were used to test for the presence of the B. burgdorferi organism in …

Morphology Of Trematodes In Gadwall Ducks (Mareca Strepera) Found In The Mississippi Valley: Parasitology Class Project, Annika N. Lensch, Ethan B. Gjervik, Mckenna A. Baker, Elizabeth K. Haumont, Mivang Xiong

Research & Creative Achievement Day

Gadwall ducks (Mareca strepera) are commonly found in lakes, ponds, and marshes west of the Mississippi River in summer months. A Gadwall duck is considered a dabbler duck which feeds on aquatic plants floating on the water's surface occasionally feeding on insects, crustaceans (crayfish, crabs), and small fish. Trematodes are a commonly found parasite in the gastrointestinal tract of many species of ducks. The ducks used in this study were legally collected and donated by hunters from Buffalo City, Wisconsin along the Mississippi River. This study will focus on identifying trematodes found within Gadwall ducks such as Echinostoma, Zygocotyle, and …

Migratory And Non-Migratory Yellow Perch Differ In Locomotor Traits, Wade Poling

Honors Theses

Yellow Perch (Perca flavescens) are widely distributed throughout the Midwest and are popular game fish and table fare. Seasonally, some eastern Lake Michigan Yellow Perch migrate into drowned river mouth lakes. Drowned river mouths are highly productive environments that also hold non-migratory resident Yellow Perch. Migration requires substantial energy expenditure; therefore, we expected migratory Yellow Perch to evolve locomotory traits that optimize energy efficiency for swimming long distances. We expected drowned river mouth lake resident Yellow Perch to evolve locomotory traits that enhance maneuverability, which are beneficial in avoiding predators, capturing prey, and moving through the structurally complex littoral …

Mechanisms Of Rod Photoreceptor Metabolism And Function In Health And Disease, Tae Jun Lee

Arts & Sciences Graduate Student Theses and Dissertations

Over 250 million people globally live with visual acuity loss or blindness as an estimated 7 million people suffer from visual acuity loss in the United States. People in the United States value vision over memory, hearing, or speech and consider losing vision to be among the top four worst outcome to happen to them. The economic cost of major vision problems is estimated to increase to 373 billion dollars by the year 2050. Among the irreparable causes of vision loss, retinal degeneration stands as a chief contributor to catastrophic eye disease. The retina is a neurosensory tissue located in …