Digital Commons Network^™

Burrowing Owl (Athene Cunicularia) Nesting Ecology In Western Kansas, Carol D. Grover-Mariner

Master's Theses or Doctor of Nursing Practice

The Burrowing Owl (Athene cunicularia) is a common occupant of Smoky Valley Ranch located in Logan County, Kansas, where the abundance of black-tailed prairie dog (Cynomys ludovicianus) burrows provides ideal habitat for the Burrowing Owl. The objectives of the study were to 1) estimate the densities of black-tailed prairie dog colonies through visual counts, 2) estimate nesting success and nest survival probabilities of the Burrowing Owl with the use of a burrow camera, and 3) estimate post-fledging dispersal and return rate of juvenile Burrowing Owl the following season. I located 96 potential nests from 24 March through 2 July 2007 …

The Enzymes Of Biotin Dependent Co(2) Metabolism: What Structures Reveal About Their Reaction Mechanisms, Grover L. Waldrop, Hazel M. Holden, Martin St. Maurice

Biological Sciences Faculty Research and Publications

Biotin is the major cofactor involved in carbon dioxide metabolism. Indeed, biotin-dependent enzymes are ubiquitous in nature and are involved in a myriad of metabolic processes including fatty acid synthesis and gluconeogenesis. The cofactor, itself, is composed of a ureido ring, a tetrahydrothiophene ring, and a valeric acid side chain. It is the ureido ring that functions as the CO₂ carrier. A complete understanding of biotin-dependent enzymes is critically important for translational research in light of the fact that some of these enzymes serve as targets for anti-obesity agents, antibiotics, and herbicides. Prior to 1990, however, there was a …

Scribble Acts In The Drosophila Fat-Hippo Pathway To Regulate Warts Activity, Shilpi Verghese, Indrayani Waghmare, Hailey Kwon, Katelin Hanes, Madhuri Kango-Singh

Biology Faculty Publications

Epithelial cells are the major cell-type for all organs in multicellular organisms. In order to achieve correct organ size, epithelial tissues need mechanisms that limit their proliferation, and protect tissues from damage caused by defective epithelial cells. Recently, the Hippo signaling pathway has emerged as a major mechanism that orchestrates epithelial development. Hippo signaling is required for cells to stop proliferation as in the absence of Hippo signaling tissues continue to proliferate and produce overgrown organs or tumors. Studies in Drosophila have led the way in providing a framework for how Hippo alters the pattern of gene transcription in target …

Constitutive Type Vi Secretion System Expression Gives Vibrio Cholerae Intra- And Interspecific Competitive Advantages, Daniel Unterweger, Maya Kitaoka, Sarah T. Miyata, Verena Bachmann, Teresa M. Brooks, Jessica Moloney, Oscar Sosa, David Silva, Jorge Duran-Gonzalez, Daniele Provenzano

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

The type VI secretion system (T6SS) mediates protein translocation across the cell membrane of Gram-negative bacteria, including Vibrio cholerae - the causative agent of cholera. All V. cholerae strains examined to date harbor gene clusters encoding a T6SS. Structural similarity and sequence homology between components of the T6SS and the T4 bacteriophage cell-puncturing device suggest that the T6SS functions as a contractile molecular syringe to inject effector molecules into prokaryotic and eukaryotic target cells. Regulation of the T6SS is critical. A subset of V. cholerae strains, including the clinical O37 serogroup strain V52, express T6SS constitutively. In contrast, pandemic strains …

Scaling Flow Path Processes To Fluvial Landscapes: An Integrated Field And Model Assessment Of Temperature And Dissolved Oxygen Dynamics In A River-Floodplain-Aquifer System, Ashley M. Helton, Geoffrey C. Poole, Robert A. Payn, Clemente Izurieta, Jack Arthur Stanford

Biological Sciences Faculty Publications

Biogeochemical cycling within river ecosystems is strongly influenced by geomorphic and hydrologic dynamics. To scale point observations of temperature and dissolved oxygen (DO) to a hydrologically complex and dynamic three-dimensional river-floodplain-aquifer system, we integrated empirical models of temperature and biotic oxygen utilization with a recently published hydrogeomorphic model. The hydrogeomorphic model simulates channel flow, floodplain inundation, and surface-subsurface water exchange on the 16 km(2) Nyack Floodplain, Middle Fork Flathead River, Montana, USA. Model results were compared to observed data sets of DO to test the hypothesis that complexity in spatiotemporal patterns of biogeochemistry emerges from a comparatively simple representation of …

Soil Nematodes And Their Prokaryotic Prey Along An Elevation Gradient In The Mojave Desert (Death Valley National Park, California, Usa), Amy M. Treonis, Kelsey Sutton, Brendan Kavanaugh, Archana Narla, Timothy Mcllarky, Jasmine Felder, Cecilia O'Leary, Megan Riley, Alyxandr Pikus, Sarah Thomas

Biology Faculty Publications

We characterized soil communities in the Mojave Desert across an elevation gradient. Our goal was to test the hypothesis that as soil quality improved with increasing elevation (due to increased productivity), the diversity of soil prokaryotes and nematodes would also increase. Soil organic matter and soil moisture content increased with elevation as predicted. Soil salinity did not correlate to elevation, but was highest at a mid-gradient, alluvial site. Soil nematode density, community trophic structure, and diversity did not show patterns related to elevation. Similar results were obtained for diversity of bacteria and archaea. Relationships between soil properties, nematode communities, and …

Cephalopod Genomics: A Plan Of Strategies And Organization, Caroline B. Albertin, Laure Bonnaud, C. Titus Brown, Wendy J. Crookes-Goodson, Rute R. Da Fonseca, Carlo Di Cristo, Brian P. Dilkes, Eric Edsinger-Gonzales, Robert M. Freeman Jr., Roger T. Hanlon, Kristen M. Koenig, Annie R. Lindgren, Mark Q. Martindale, Patrick Minx, Leonid L. Moroz, Marie-Therese Nödl, Spencer V. Nyholm, Atsushi Ogura, Judit R. Pungor, Joshua J. C. Rosenthal, Erich M. Schwarz, Shuichi Shigeno, Jan M. Strugnell, Tim Wollesen, Guojie Zhang, Clifton W. Ragsdale

Biology Faculty Publications and Presentations

The Cephalopod Sequencing Consortium (CephSeq Consortium) was established at a NESCent Catalysis Group Meeting, “Paths to Cephalopod Genomics- Strategies, Choices, Organization,” held in Durham, North Carolina, USA on May 24-27, 2012. Twenty-eight participants representing nine countries (Austria, Australia, China, Denmark, France, Italy, Japan, Spain and the USA) met to address the pressing need for genome sequencing of cephalopod mollusks. This group, drawn from cephalopod biologists, neuroscientists, developmental and evolutionary biologists, materials scientists, bioinformaticians and researchers active in sequencing, assembling and annotating genomes, agreed on a set of cephalopod species of particular importance for initial sequencing and developed strategies and an …

A Proposed Mechanism For Nitrogen Acquisition By Grass Seedlings Through Oxidation Of Symbiotic Bacteria, James F. White Jr., Holly Crawford, Mónica S. Torres, Robert Mattera, Ivelisse Irizarry, Marshall Bergen

All Faculty Scholarship for the College of the Sciences

In this paper we propose and provide evidence for a mechanism, oxidative nitrogen scavenging (ONS), whereby seedlings of some grass species may extract nitrogen from symbiotic diazotrophic bacteria through oxidation by plant-secreted reactive oxygen species (ROS). Experiments on this proposed mechanism employ tall fescue (Festuca arundinaceae) seedlings to elucidate features of the oxidative mechanism. We employed 15N₂ gas assimilation experiments to demonstrate nitrogen fixation, direct microscopic visualization of bacteria on seedling surfaces to visualize the bacterial oxidation process, reactive oxygen probes to test for the presence of H₂O₂ and cultural experiments to assess conditions …

Cartilage On The Move: Cartilage Lineage Tracing During Tadpole Metamorphosis, Ryan R. Kerney, Alison L. Brittain, Brian K. Hall, Daniel R. Buchholz

Biology Faculty Publications

The reorganization of cranial cartilages during tadpole metamorphosis is a set of complex processes. The fates of larval cartilage-forming cells (chondrocytes) and sources of adult chondrocytes are largely unknown. Individual larval cranial cartilages may either degenerate or remodel, while many adult cartilages appear to form de novo during metamorphosis. Determining the extent to which adult chondrocytes/cartilages are derived from larval chondrocytes during metamorphosis requires new techniques in chondrocyte lineage tracing. We have developed two transgenic systems to label cartilage cells throughout the body with fluorescent proteins. One system strongly labels early tadpole cartilages only. The other system inducibly labels forming …

Of Gardens, Microorganisms, And Long Island Sound, Judy Preston

Wrack Lines

How healthy soil can make an environmental difference.

"I happened to turn over a large rounded stone in my garden to find a mesmerizing world of organisms that had, just moments earlier, been going about their business before being exposed to the sunlit world, and me."

Lifelines Fall 2012, Southern Adventist University

Lifelines - Biology Department Newsletter

The Fall 2012 issue of Lifelines features articles on undergraduate research in biology, field ecology, and the addition of Dr. Aaron Corbit to the faculty.

Characterization Of Biofilm Formation By Borrelia Burgdorferi In Vitro, Eva Sapi, Scott L. Bastian, Cedric L. Mpoy, Shernea Scott, Amy Rattelle, Namrata Pabbati, Akhila Poruri, Divya Burugu, Priyanka A. Theophilus, Truc V. Pham, Akshita Datar, Navroop K. Dhaliwal, Alan Macdonald, Michael J. Rossi, Saion K. Sinha, David F. Luecke

Biology and Environmental Science Faculty Publications

Borrelia burgdorferi, the causative agent of Lyme disease, has long been known to be capable of forming aggregates and colonies. It was recently demonstrated that Borrelia burgdorferi aggregate formation dramatically changes the in vitro response to hostile environments by this pathogen. In this study, we investigated the hypothesis that these aggregates are indeed biofilms, structures whose resistance to unfavorable conditions are well documented. We studied Borrelia burgdorferi for several known hallmark features of biofilm, including structural rearrangements in the aggregates, variations in development on various substrate matrices and secretion of a protective extracellular polymeric substance (EPS) matrix using several modes …

Daily Energy Expenditure In Precocial Shorebird Chicks: Smaller Species Perform At Higher Levels, Robert Ricklefs, Karen Krijgsveld, G. Visser

Biology Department Faculty Works

We measured daily energy expenditure (DEE) during the development periods of precocial chicks of five species of Arctic shorebirds spanning a broad range in size, in order to investigate the relationships between DEE, body size, and growth rate. We also quantified the effect of weather conditions on the energy expenditure of chicks to establish the impact of cold arctic weather on their time and energy budgets. We used the doubly labeled water method to measure DEE at ambient temperatures in an outside enclosure on the subarctic tundra at Churchill, Manitoba, Canada. Growth rate was highest in the smallest species, and …

Phylogeny Of A Neotropical Clade In The Gesneriaceae: More Tales Of Convergent Evolution, John L. Clark, Minde M. Funke, Aaron M. Duffy, James F. Smith

Biology Faculty Publications and Presentations

The Gesneriaceae is a family known for convergent evolution of complex floral forms. As a result, defining genera and resolving evolutionary relationships among such genera using morphological data alone has been challenging and often does not accurately reflect monophyletic lineages. The tribe Episcieae is the most diverse within Neotropical Gesneriaceae in terms of its number of species and morphological diversity. As a result, defining genera using floral characters has been historically troublesome. Here we investigate relationships among genera of the tribe using an array of chloroplast DNA, nuclear ribosomal genes, and low-copy nuclear genes to provide resolution for the monophyly …

The Importance Of Host Plant Limitation For Caterpillars Of An Arctiid Moth (Platyprepia Virginalis) Varies Spatially, Richard Karban, Patrick Grof-Tisza, John L. Maron, Marcel Holyoak

Biological Sciences Faculty Publications

Spatial dynamic theories such as source–sink models frequently describe habitat-specific demographies, yet there are surprisingly few field studies that have examined how and why interacting species vary in their dynamics across multiple habitat types. We studied the spatial pattern of interaction between a chewing herbivore and its primary larval host plant in two habitat types. We found that the interaction between an arctiid caterpillar (Platyprepia virginalis) and its host (Lupinus arboreus) differed in wet vs. upland dry habitats, as did yearly population dynamics for the caterpillar. In upland sites, there was a strong positive relationship between …

Neo-Allopatry And Rapid Reproductive Isolation, Daniel Montesinos, Gilberto Santiago, Ragan M. Callaway

Biological Sciences Faculty Publications

Over the past 3 centuries, many species have been dispersed beyond their natural geographic limits by humans, but to our knowledge, reproductive isolation has not been demonstrated for such neo-allopatric species. We grew seeds from three species of Centaurea (Centaurea solstitialis, Centaurea calcitrapa, and Centaurea sulphurea) that are native to Spain and have been introduced into California, and we tested to what extent seed production was affected by pollen source. Compared with within-population crosses, seed production decreased by 52% and 44%, respectively, when C. solstitialis and C. sulphurea from California were pollinated with conspecific pollen from native populations in Spain. …

Spatial And Oceanographic Factors Affecting Black-Legged Kittiwake And Thick-Billed Murre Distributions In The Southeastern Bering Sea, Brian Hoover

Capstone Projects and Master's Theses

The distribution patterns of Thick-billed Murres (Uria lomvia) and Black-legged Kittiwakes (Rissa tridactyla) in the southeastern Bering Sea were documented at sea during vessel-based surveys in July-August of 2008 and 2009. The relationships of murre and kittiwake densities with environmental variables were investigated using binomial generalized additive models (GAMs) to model the presence or absence of birds, and Gamma-error distribution GAMs to model the positive densities of birds. Environmental variables included oceanographic factors (Chlorophyll, Chlorophyll anomalies, Daily SST, Monthly SST), spatial factors (Distance to nearest colony, Distance to 300m shelf break, Depth), and a temporal factor (Year). Nocturnal surveys were …

Role Of Provisions And Season On Foraging And Female Dominance Behavior In Ring-Tailed Lemurs (Lemur Catta) On St. Catherine's Island, Timothy Moore

College of Graduate Studies: Theses & Dissertations

Madagascar is undergoing habitat destruction and degradation that is threatening its unique species, including ring-tailed lemurs. Ring-tailed lemurs (Lemur catta) live in matriarchal groups composed of a dominant female, adult males, subadult males and females, and young. Due to their dominance, it has been suggested that female ringtailed lemurs have access to the highest quality resources and can monopolize food patches. Lemurs on St. Catherine's are free ranging and have unlimited access to natural food sources, but they are also provisioned with supplementary food to ensure a balanced diet. My study aimed to determine the impact of provisions on female …

West Nile Virus Seroreversion And The Influence Of Herd Immunity On Disease Risk In A Long-Term Study Of Free-Ranging Birds, Eileen M. Mckee

All Student Theses and Dissertations

The transmission and amplification of West Nile virus (WNV) is driven by the number of susceptible avian hosts. The quantity of susceptible hosts is determined by 1) recruitment of juvenile birds during the breeding season, 2) adult birds previously unexposed to WNV, and 3) adult birds with waning antibody titers. Although rarely tested, avian herd immunity and seroreversion could have a direct impact on Culex infection rate, a proxy for the reproductive number of WNV. In this study, we utilized data from a seven year study investigating WNV transmission ecology in suburban Chicago, Illinois. We tested the hypothesis that herd …

Characterization Of The Stem Cell Niche In Drosophila Testes, Vittorio Mena Jr.

Seton Hall University Dissertations and Theses (ETDs)

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The Effects Of Locomotor Posture On Kinematics, Performance And Behavior During Obstacle Negotiation In Lizards, Jessica Self

College of Graduate Studies: Theses & Dissertations

The ability to efficiently move over uneven terrain is critical for most terrestrial animals. Bipedal running is common in lizard species, however the biological advantage of a bipedal running posture remains uncertain. I examined the hypothesis that a bipedal posture is advantageous when crossing obstacles. Particularly, I determined whether kinematic adjustments differ among four focal species with contrasting body forms and ecology. I also examined how sprint speed changed when crossing obstacles with a quadrupedal versus a bipedal posture. I quantified kinematics from high-speed video (300 frames/second) of lizards running down a 3m runway both with and without the presence …

Bird Use Of Cumberland Island's Freshwater Wetlands, Lisa Dlugolecki

College of Graduate Studies: Theses & Dissertations

Cumberland Island is the southernmost barrier island off the coast of Georgia. Its freshwater wetlands are an important, rare habitat to have on a barrier island surrounded by saltmarsh and ocean. Many species of birds require freshwater wetlands as feeding, roosting and nesting grounds. However, the freshwater wetlands on Cumberland Island have been impacted by humans for centuries causing birds to abandon their historic nesting ground. Known land use histories of Cumberland Island's freshwater wetlands were gathered to try and determine how the wetlands changed over time Wetlands were analyzed for presence of wetland-dependent birds and recorded. Thirty-six species of …

Patterns Of Chemosensory Behavior In A Closed Population Of Wild African Elephants (Loxodonta Africana), Russell W. Blogg

College of Graduate Studies: Theses & Dissertations

Chemosensory behaviors are used by many mammalian species to assess chemical signals in the environment. These chemical signals may contain important information about reproductive state, identity, status, or location of conspecifics. Elephants are a long-lived species and males reproduce at a much later age than females, which provides a protracted developmental period for males. This study examined chemosensory behaviors in a population of African elephants living in Addo Elephant National Park, South Africa and demonstrated that patterns emerge as elephants develop and approach sexual maturity. Older pubescent males (15-19 year olds) performed more chemosensory behaviors than younger pubescent males (10-14 …

Spatial And Temporal Immune Response In House Flies In Response To Ingestion Of Bacillus Cereus And Eschericha Coli 0157-H7, Adam Fleming

College of Graduate Studies: Theses & Dissertations

House flies (Musca domestica L.) feed and breed on septic substrates, putting them in direct contact with a multitude of disease causing agents and can act as a bridge for those agents to humans. The house fly has previously been shown to carry many different species of bacteria that are pathogenic. Escherichia coli O157:H7 is a pathogenic enterohemorrhagic serotype of E. coli that can be vectored by the house fly. Bacillus cereus is a foodborne pathogen that has also been isolated from the house fly in previous studies. To examine vector potential for these pathogens, house flies were fed green …

Predation Risk And Colony Structure In The Pea Aphid, Acyrthosiphon Pisum, Carl Nicolas Keiser

College of Graduate Studies: Theses & Dissertations

Many organisms live in transient or permanent aggregations to reduce individual predation risk. Hamilton's "Selfish Herd" theory states that an individual should assume a central position within a group to decrease individual predation risk relative to that of its neighbors (i.e., individuals should be selfish). This theory, however, cannot predict the spatial distribution of individuals within clonal aggregations, that is, when individuals are genetically identical (the "evolutionary self"). As aphids (small, herbivorous insects) are parthenogenetic, emit alarm signals, and have high levels of phenotypic plasticity to cope with environmental stressors like predation risk, they are a model organism for investigating …

Functions Of The Arabidopsis Kinesin Superfamily Of Microtubule-Based Motor Proteins, Chuanmei Zhu, Ram Dixit

Biology Faculty Research

Plants possess a large number of microtubule-based kinesin motor proteins. While the kinesin-2, 3, 9, and 11 families are absent from land plants, the kinesin-7 and 14 families are greatly expanded. In addition, some kinesins are specifically present only in land plants. The distinctive inventory of plant kinesins suggests that kinesins have evolved to perform specialized functions in plants. Plants assemble unique microtubule arrays during their cell cycle, including the interphase cortical microtubule array, preprophase band, anastral spindle and phragmoplast. In this review, we explore the functions of plant kinesins from a microtubule array viewpoint, focusing mainly on Arabidopsis kinesins. …

Small Molecule Inhibitors Of Bacillus Anthracis Protective Antigen Proteolytic Activation And Oligomerization, Alexander N. Wein, Brian N. Williams, Shihui Liu, Boris Ermolinsky, Daniele Provenzano, Ruben Abagyan, Andrew Orry, Stephen H. Leppla, Michael Peredelchuk

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Protective antigen (PA), lethal factor, and edema factor, the protein toxins of Bacillus anthracis, are among its most important virulence factors and play a key role in infection. We performed a virtual ligand screen of a library of 10000 members to identify compounds predicted to bind to PA and prevent its oligomerization. Four of these compounds slowed PA association in a FRET-based oligomerization assay, and two of those protected cells from intoxication at concentrations of 1-10 μM. Exploration of the protective mechanism by Western blot showed decreased SDS-resistant PA oligomer on cells and, surprisingly, decreased amounts of activated PA. In …

An Experimental Evaluation Of The Use Of C3 Δ13C Plant Tissue As A Proxy For The Paleoatmospheric Δ13Co2 Signature Of Air, B. H. Lomax, C. A. Knight, J. A. Lake

Biological Sciences

Previous work suggests that the relationship between the carbon isotope composition of air (d13Ca) and plant leaf tissue (d13Cp) can be used to track changes in the carbon isotope composition of paleo-atmospheric CO2. Here we test this assertion in a series of experiments using the model plant Arabidopsis thaliana grown under a range of atmospheric CO2 concentrations relevant to geologic time (380, 760, 1000, 1500, 2000 and 3000 ppm). Nested within these CO2 experiments water availability was controlled (giving two sets of experimental plants; low and high water treatment at each CO2 concentration) to manipulate stomatal opening, a key process …

Current Strategies For Promoting Regeneration After Spinal Cord Injury, Seth Schirmer

Student Theses and Dissertations

Each year 12,000 people suffer spinal cord injury (SCI) in the USA. Thus, it is critical we find a means by which to stimulate regeneration in the injured spinal cord towards recovery of function in these patients. Therefore, significant amount of federal and private funding is directed to SCI research, with research focusing on anything measures from using embryonic stem cells to replace damaged cells, to stimulating regeneration through daily physical therapy. This paper is a review of some of the current strategies evolved from such research for promoting spinal cord regeneration after spinal cord injury, and has focused on …

Influence Of Microsite Disturbance On The Establishment Of Two Congeneric Invasive Thistles, Emily S.J. Rauschert, Katriona Shea

Biological, Geological, and Environmental Faculty Publications

The successful establishment of invasive species has been shown to depend on aspects of the invaded community, such as gap characteristics. Biotic resistance may be particularly critical for stopping invaders at early life history stages, but new species can often invade following disturbances, which may create microsites with very different characteristics than are usually present. We examine the response of two invasive thistle species, Carduus nutans L. and C. acanthoides L., to three different microsite characteristics: disturbance type, size, and water availability. The two species initially responded differently to the type of disturbance: C. acanthoides had higher emergence and survival …