Digital Commons Network^™

Insight Into Human Brain Evolution Through Phylogenetic Analysis And Comparative Genomics, Amy Marie Boddy

Wayne State University Dissertations

As a species, humans are often considered to be unique among mammals, with respect to their large brain size and enhanced cognitive abilities. Humans are the most encephalized mammals, with a brain that is six times larger than expected relative to body mass. Presumably, it is this high degree of encephalization that underlies our advanced cognitive abilities, including the skills needed for complex language and culture. Understanding how large brains evolved can shed light on what makes the human brain unique and introduce possible mechanism for human specific neurodegenerative diseases. This study takes a both a phenotypic and molecular approach …

Investigation Of X Chromosome Recognition: The Role Of Small Rna In Drosophila Dosage Compensation, Debashish Unnikrishnan Menon

Wayne State University Dissertations

In humans and flies, females have two X chromosomes but males have one X chromosome and one Y chromosome. This leads to a fatal imbalance in X-linked gene expression in one sex. In mammals and in the fruit fly Drosophila, modulation of X chromosome expression is critical for survival. This process is termed dosage compensation. Flies increase expression from the male X chromosome two-fold. This is achieved by the Male Specific Lethal (MSL) complex, which consists of two large, non-coding RNA on the X transcripts (roX1 and roX2) and five proteins. The roX RNAs have a critical …

Benzo[A]Pyrene Effects On Fundulus Heteroclitus Reproductive Endpoints, Frank Booc

Electronic Theses and Dissertations

Benzo[a]pyrene (BaP) is a polycyclic aromatic hydrocarbon (PAH) that modulates aromatase enzyme function and, thus, potentially interrupts normal reproductive function. The aim of this study was to use a fish model, Fundulus heteroclitus, to assess whether BaP exposure adversely impacted reproduction. Adult fish were exposed to waterborne BaP concentrations of (0, 1 or 10 μg/L) for 28 days. Males and females were combined for the second half of the exposure (days 14-28) in order to quantitate egg production and fertilization success. Egg fertilization and subsequent hatching success of F1 embryos was significantly decreased by 10 μg/L BaP. In males, both …

Differential Bait Preference And Rate Of Attraction By Argentine Ants (Linepithema Humile Mayr) At Freshwater And Saltwater Marsh Sites In Southern California, Victor D. Carmona-Galindo, Meghan Moore, Melanie Tansuwan

Biology Faculty Works

Ants are a type of foraging insect species which harvests food resources based on availability. When ants locate food resources that are scarce within their habitat, they tend to be more strongly attracted to that food resource. This study used protein, carbohydrate and control based baits to examine if there was a deficiency in resources demonstrated by the ants at two different wetland habitats. We sampled Argentine ants (Linepithema humileMayr) within the saltwater and freshwater marshes of Ballona Wetlands in Los Angeles, CA. We found significant differences in the rapid deployment of Argentine ants towards protein baits over …

The Evodevoci: A Concept Inventory For Gauging Students’ Understanding Of Evolutionary Developmental Biology, Kathryn E. Perez, Anna Hiatt, Gregory K. Davis, Caleb Trujillo, Donald P. French, Mark Terry, Rebecca M. Price

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

The American Association for the Advancement of Science 2011 report Vision and Change in Undergraduate Biology Education encourages the teaching of developmental biology as an important part of teaching evolution. Recently, however, we found that biology majors often lack the developmental knowledge needed to understand evolutionary developmental biology, or “evo-devo.” To assist in efforts to improve evo-devo instruction among undergraduate biology majors, we designed a concept inventory (CI) for evolutionary developmental biology, the EvoDevoCI. The CI measures student understanding of six core evo-devo concepts using four scenarios and 11 multiple-choice items, all inspired by authentic scientific examples. Distracters were designed …

Breeding Biology Of Chuck-Will's-Widows: Incubation, Brooding, And Provisioning Behavior And Characteristics Of Nest Sites, Ryan Sean O'Connor

Online Theses and Dissertations

Chuck-will's-widows (Antrostomus carolinensis) are cryptically colored grounding-nesting nightars that breed throughout much of the eastern United States, primarily in mixed-forest habitat. Because of their cryptic plumage and nocturnal habits, little is known about their behavior, particularly their breeding and nesting behavior. Thus, my objectives were to: (1) quantify patterns of incubation behavior (e.g., on bouts vs. off bouts) and the respective roles of males and females, (2) quantify the brooding and provisioning behavior of males and females, and, (3) compare the characteristics of nest sites and randomly selected unused sites to determine those features important in nest site selection.

My …

Effects Of Thermal Acclimation On The Critical Thermal Maxima Of The Tropical Cockroaches: Blaptica Dubia, Eublaberus Posticus And Blaberus Discoidalis (Blaberidae), Lauren Michelle Goode

Online Theses and Dissertations

The Critical Thermal Maxima (CTMax) is a measure of upper thermal tolerance. The physiological response upon reaching CTMax is similar across taxa, making CTMax useful in comparative studies. The CTMax defines the ecological lethal temperature of an organism and has been used to predict the effects of global climate change. CTMax was determined for adults and first instar nymphs of three species of tropical cockroaches: Blaptica dubia, Eublaberus posticus, and Blaberus discoidalis. Adult cockroaches were acclimated to temperatures of 10°C, 15°C, 20°C, 25°C, 31°C and 37°C for a period of seven days. Blaptica dubia was the only species to survive …

The Phylogenetics Of Tachinidae (Insecta: Diptera) With An Emphasis On Subfamily Structure, Daniel J. Davis

Browse all Theses and Dissertations

The parasitoid flies of the Tachinidae family are an important and diverse (>10,000 species) lineage of insects. However, tachinids are not well studied partially due to their confusing classification and taxonomy. DNA sequences were obtained from twenty tribal representatives of Tachinidae, along with eight outgroups in order to phylogenetically reconstruct the superfamilial, subfamilial and tribal relationships of Tachinidae. Seven gene regions of six genes (18S, 28S, COI, CAD, Ef1a, and TPI) were sequenced for each taxon (6214 bp total). Both maximum likelihood and Bayesian methods were used to infer phylogenies. The Sarcophagidae and Oestridae were usually reconstructed as monophyletic. …

Can Antibiotics From Recently Discovered Marine Actinobacteria Slow The Tide Of Antibiotic Resistance?, Lorraine Susan Tangeman

Browse all Theses and Dissertations

Actinobacteria, one phylum of gram positive bacteria, are found throughout all the environments on earth. Actinobacteria have long been studied for the benefits they provide, both to their environment and to humans, and have a great capacity for adaptation and evolution. They decompose organic matter, replenishing nutrients into the soil, and as such are important members of the food chain. Humans benefit from the exploitation of Actinobacterial metabolites as antimicrobial drugs. These antimicrobials have been effectively utilized for decades in the fight against infectious disease. Despite the success of this drug arsenal we are now in the midst of an …

Likely Successors Of Ash Species In Response To The Emerald Ash Borer In Ohio Forests, Brian Michael Good

Browse all Theses and Dissertations

Invasive species have the capability to alter landscapes and change the composition of a forest in a very short time. The recent invasive pest, Agrilus planipennis, emerald ash borer, was unintentionally introduced to the United States via ship route to Michigan. The pest attacks and kills all five native ash species in Ohio. This study focused on an area in west central Ohio not yet affected by the borer. Ash centered plots were used to record all species and sizes (diameter at breast height) within a 5m radius of a central ash tree. Plots ranged in topography and all five …

Co2/Ph Signaling Of Respiratory Control Neurons In The Bullfrog, Lithobates Catesbeianus: Development Of A Comparative Model, Joseph M. Santin

Browse all Theses and Dissertations

The locus coeruleus (LC) in the brainstem senses alterations in CO₂/pH and influences ventilatory adjustments that restore blood gas values to starting levels in bullfrogs (Lithobates catesbeianus). We hypothesized that neurons of the bullfrog LC are sensitive to changes in CO₂/pH and that chemosensitive responses are intrinsic to individual neurons. In addition, we hypothesized putative respiratory control neurons of the bullfrog LC would be stimulated by hypercapnic acidosis within physiological ranges of PCO₂/pH. 84% of LC neurons depolarized and increased firing rates during exposure to hypercapnic acidosis (HA). A pH dose response …

Enhancing Herbicide Efficacy On Reed Canary Grass (Phalaris Arundinacea) By Testing A Plant Growth Hormone, Application Times, And Herbicide Type, Denise Lynn Fong

Browse all Theses and Dissertations

Phalaris arundinacea, also known as reed canary grass (RCG), is a non-native invasive grass that thrives in floodplains. RCG plants displace native flora which reduces diversity in otherwise species rich wetlands. This is a widespread problem throughout many parts of the USA. RCG can grow by its seeds or its rhizomes. Its seeds are capable of surviving long periods in soil. RCG can potentially be controlled by multi-year treatments in early spring and early fall with broad spectrum or grass specific herbicides. The goal of this study was to optimize methods to control RCG, in order to increase species …

Spatial And Seasonal Signals In Stable Isotopes Of Incisor Enamel From Free-Ranging, Thirteen-Lined Ground Squirrels, Jacob Andrew Brassington

Honors Theses

From early May through late September, 2012, we captured, tagged, and collected body masses from multiple, free-ranging thirteen-lined ground squirrels (Ictidomys tridecemlineatus) in southwestern Michigan, with 14 individuals recaptured 1 or more times through the season. Beginning in mid-June, we captured and euthanized 12 or these individuals (on average, about 1 per week) to allow study of their lower incisors. We serially micro-sampled enamel along squirrel incisors using laser ablation and determined stable isotope ratios (d13 and d18 O) with gas chromatography-isotope-ratio mass spectrometry (GC-IRMS). The resulting values fell into two spatial groups. Specimens collected within 25 m of a …

How Species Richness And Total Abundance Constrain The Distribution Of Abundance, Kenneth J. Locey, Ethan P. White

Biology Faculty Publications

The species abundance distribution (SAD) is one of the most intensively studied distributions in ecology and its hollow-curve shape is one of ecology’s most general patterns. We examine the SAD in the context of all possible forms having the same richness (S) and total abundance (N), i.e. the feasible set. We find that feasible sets are dominated by similarly-shaped hollow-curves, most of which are highly correlated with empirical SADs (most R2 values > 75%), revealing a strong influence of N and S on the form of the SAD and an a priori explanation for the ubiquitous hollow-curve. Empirical SADs are often …

Life History, C. W. Fox, Frank J. Messina

Biology Faculty Publications

No abstract provided.

The Regulation And Packaging Of Synaptic Vesicles Related To Recruitment Within Crayfish And Fruit Fly Neuromuscular Junctions: Variations In Low- And High-Output Terminals, Wenhui Wu

Theses and Dissertations--Biology

Glutamate is the main excitatory neurotransmitter in the CNS and at the neuromuscular junctions (NMJs) of invertebrate. The characteristic similarities to CNS glutamatergic synapses in vertebrate and the anatomical simplicity of invertebrate NMJs favor the investigation of glutamatergic synaptic functions in this system. This dissertation mainly aimed to physiologically separate two functional vesicle groups, the reserve pool (RP) and readily releasable pool (RRP) within presynaptic nerve terminals of Procambarus Clarkii and Drosophila melanogaster. This was addressed in part by blocking the vesicular glutamate transporter (VGlut) with bafilomycin A1. Various frequencies of motor nerve stimulation, exposure time, and concentration of …

Factors Influencing The Establishment And Survival Of Native Hardwood Tree Seedlings Of The Kentucky Inner Bluegrass Blue Ash-Oak Savanna-Woodland, James D. Shaffer

Theses and Dissertations--Biology

Historically, the Kentucky Inner Bluegrass blue ash-oak savanna-woodland was the primary ecosystem of the Inner Bluegrass Region (IBR) of Kentucky. After European settlement, the majority (>99%) of Bluegrass savanna was converted to agricultural and urban land uses. Currently remnant savanna tree species are failing to recruit. Therefore, a long-term restoration ecology project researching competition and disturbance on seedling establishment, survival, and growth has been established at Griffith Woods (the largest remaining savanna in Kentucky) in Harrison Co., KY. Fourteen native hardwood tree species (a total of 6,168 seedlings) have been experimentally planted. Light, soil, surrounding vegetation, and herbivory, factors …

Predicting Invasion In Grassland Ecosystems: Is Exotic Dominance The Real Embarrassment Of Richness?, Eric W. Seabloom, Elizabeth T. Borer, Yvonne Buckley, Elsa E. Cleland, Kendi Davies, Jennifer Firn, W. Stanley Harpole, Yann Hautier, Eric Lind, Andrew Macdougall, John L. Orrock, Suzanne M. Prober, Peter Andler, Juan Alberti, T. Michael Anderson, Jonathan D. Bakker, Lori A. Biederman, Dana Blumenthal, Cynthia S. Brown, Lars A. Brudvig, Maria Caldeira, Chengjin Chu, Michael J. Crawley, Pedro Daleo, Ellen I. Damschen, Carla M. D'Antonio, Nicole M. Decrappeo, Chris R. Dickman, Guozhen Du, Philip A. Fay, Paul Frater, Daniel S. Gruner, Nicole Hagenah, Andrew Hector, Aveliina Helm, Helmut Hillebrand, Kirsten S. Hofmockel, Hope C. Humphries, Oscar Iribarne, Virginia L. Jin, Adam Kay, Kevin P. Kirkman, Julia A. Klein, Johannes M. H. Knops, Kimberly J. La Pierre, Laura M. Ladwig, John G. Lambrinos, Andrew D. B. Leakey, Qi Li, Wei Li, Rebecca Mcculley, Brett Melbourne, Charles E. Mitchell, Joslin L. Moore, John Morgan, Brent Mortensen, Lydia R. O'Halloran, Meelis Partel, Jesus Pascual, David A. Pyke, Anita C. Risch, Roberto Salguero-Gomez, Mahesh Sankaran, Martin Schuetz, Anna Simonsen, Melinda Smith, Carly Stevens, Lauren L. Sullivan, Glenda M. Wardle, Elizabeth M. Wolkovich, Peter D. Wragg, Justin Wright, Louie Yang

School of Biological Sciences: Faculty Publications

Invasions have increased the size of regional species pools, but are typically assumed to reduce native diversity. However, global-scale tests of this assumption have been elusive because of the focus on exotic species richness, rather than relative abundance. This is problematic because low invader richness can indicate invasion resistance by the native community or, alternatively, dominance by a single exotic species. Here, we used a globally replicated study to quantify relationships between exotic richness and abundance in grass-dominated ecosystems in 13 countries on six continents, ranging from salt marshes to alpine tundra. We tested effects of human land use, native …

Delayed Amyloid Plaque Deposition And Behavioral Deficits In Outcrossed Aβpp/Ps1 Mice, Brian A. Couch, Meghan E. Kerrisk, Adam C. Kaufman, Haakon B. Nygaard, Stephen M. Strittmatter, Anthony J. Koleske

School of Biological Sciences: Faculty Publications

Alzheimer’s disease (AD) is a progressive neurodegenerative dementia characterized by amyloid plaque accumulation, synapse/dendrite loss, and cognitive impairment. Transgenic mice expressing mutant forms of amyloid-β precursor protein (AβPP) and presenilin-1 (PS1) recapitulate several aspects of this disease and provide a useful model system for studying elements of AD progression. AβPP/PS1 mice have been previously shown to exhibit behavioral deficits and amyloid plaque deposition between 4–9 months of age. We crossed AβPP/PS1 animals with mice of a mixed genetic background (C57BL/6 × 129/SvJ) and investigated the development of AD-like features in the resulting outcrossed mice. The onset of memory-based behavioral impairment …

Plant Mitochondrial Genome Evolution Can Be Explained By Dna Repair Mechanisms, Alan C. Christensen

School of Biological Sciences: Faculty Publications

Plant mitochondrial genomes are notorious for their large and variable size, nonconserved open reading frames of unknown function, and high rates of rearrangement. Paradoxically, the mutation rates are very low. However, mutation rates can only be measured in sequences that can be aligned—a very small part of plant mitochondrial genomes. Comparison of the complete mitochondrial genome sequences of two ecotypes of Arabidopsis thaliana allows the alignment of noncoding as well as coding DNA and estimation of the mutation rates in both. A recent chimeric duplication is also analyzed. A hypothesis is proposed that the mechanisms of plant mitochondrial DNA repair …

Identifying Requirements For The Invasion Of A Tick Species And Tick-Borne Pathogen Through Ticksim, Holly Gaff, Robyn Nadolny

Biological Sciences Faculty Publications

Ticks and tick-borne diseases have been on the move throughout the United State over the past twenty years. We use an agent-based model, TICKSIM, to identify the key parameters that determine the success of invasion of the tick and if that is successful, the success of the tick-borne pathogen. We find that if an area has competent hosts, an initial population of ten ticks is predicted to always establish a new population. The establishment of the tick-borne pathogen depends on three parameters: the initial prevalence in the ten founding ticks, the probability that a tick infects the longer-lived hosts and …

Cooperative Breeding And Long-Distance Dispersal: A Test Using Vagrant Records, Caroline L. Rusk, Eric L. Walters, Walter D. Koenig

Biological Sciences Faculty Publications

Cooperative breeding is generally associated with increased philopatry and sedentariness, presumably because short-distance dispersal facilitates the maintenance of kin groups. There are, however, few data on long-distance dispersal in cooperative breeders-the variable likely to be important for genetic diversification and speciation. We tested the hypothesis that cooperative breeders are less likely to engage in long-distance dispersal events by comparing records of vagrants outside their normal geographic range for matched pairs (cooperatively vs. non-cooperatively breeding) of North American species of birds. Results failed to support the hypothesis of reduced long-distance dispersal among cooperative breeders. Thus, our results counter the conclusion that …

In The News, Joe N. Caudell

Human–Wildlife Interactions

No abstract provided.

In Vitro And In Silico Characterization Of Solanum Lycopersicum Wound-Inducible Proteinase Inhibitor-Ii Gene, Faiza Munir, Syed Muhammad Saqlan Naqvi, Tariq Mahmood

Turkish Journal of Biology

Plant proteinase inhibitors (PIs) are antimetabolic defensive proteins conferring resistance in plants against a variety of competing organisms such as bacteria, viruses, fungi, attacking nematodes, and insects. In the fields of plant biochemistry and molecular genetics research, tremendous success has been achieved in generating transgenic crops that have defensive approaches against biotic challenges. In this study, in vitro and in silico analysis was carried out for a wound-inducible PI-II gene isolated from 4 selected varieties (Roma, Nagina, Moneymaker, and Rio Grande) of Solanum lycopersicum L. Around 684 bp of PI-II gene was amplified, sequenced, translated, modeled to protein structure, and …

Compositional Studies And Antioxidant Potential Of Albizia Lebbeck (L.) Benth. Pods And Seeds, Muhammad Zia-Ul-Haq, Shakeel Ahmad, Mughal Qayum, Sezai̇ Erci̇şli̇

Turkish Journal of Biology

Albizia lebbeck (L.) Benth. is an important medicinal tree found in Pakistan. The present study evaluates the composition and antioxidant potential of various parts of the A. lebbeck plant. Compositional studies indicated carbohydrates as major components while saponin was found as a major antinutrient in both pods and seeds. Potassium was found in the highest amount and copper in the lowest. The amino acid profile indicated that arginine and lysine are present in excessive amounts in seeds while glutamic acid and aspartic acid are present in the highest concentrations in pods. While the linoleic acid was detected as the major …

The Effect Of 3-Methylcholanthrene And Butylated Hydroxytoluene On Glycogen Levels Of Liver, Muscle, Testis, And Tumor Tissues Of Rats, Fi̇kri̇ye Polat, Egemen Dere, Eylem Gül, İzzet Yelkuvan, Öztürk Özdemi̇r, Günsel Bi̇ngöl

Turkish Journal of Biology

This study examined the effects of separate and combined applications of 3-methylcholanthrene, a polycyclic aromatic hydrocarbon and potent carcinogenic agent, and butylated hydroxytoluene, the antioxidant food additive, on the glycogen levels of liver, muscle, testis, and tumor tissues in rats. Adult male Wistar albino rats weighing 100-110 g at 8 weeks of age were used in this study. This study consisted of a control group (n = 9) and 3 different experiment groups in which rats were chronically treated with 3-methylcholanthrene (n = 9) or butylated hydroxytoluene (n = 11) or a combination of these agents (n = 14). Rats …

Purification Of Antioxidant Protein Isolated From Peganum Harmala And Its Protective Effect Against Ccl4 Toxicity In Rats, Hanaa Ahmed, Helal Abu Elzahab, Gamia Alswiai

Turkish Journal of Biology

The present study was conducted to determine the protective effect of the purified protein from seeds of Peganum harmala against carbon tetrachloride (CCl_{4})-induced toxicity in male albino rats. The purification steps included ammonium sulfate fractionation and chromatography on DEAE-cellulose, CM-Sepharose, and Superdex 75 columns. The molecular mass of the purified protein was 132 kDa by gel filtration technique; it consisted of 2 subunits with molecular masses of 30.199 kDa and 38.018 kDa by SDS-PAGE. Results of the dose-dependent experiment with purified protein prior to CCl_4 administration were higher at 4 mg/kg body weight. The antioxidant activity of the purified protein …

Karyotype Traits In Romanian Selections Of Edible Blue Honeysuckle, Elena Truta, Gabriela Vochita, Craita Maria Rosu, Maria Magdalena Zamfirache, Zenovia Olteanu, Lacramioara Oprica

Turkish Journal of Biology

Large morpho-anatomical and biochemical variability was evidenced in all Lonicera caerulea L. provenances. The knowledge of chromosome constitution is of basic importance in this context of elevated phenotype heterogeneity and represents a necessary step in breeding programs. The Romanian selections are tetraploid (2n = 4x = 36). Chromosomes are small-sized (

A Holistic Approach For Selection Of Bacillus Spp. As A Bioremediator For Shrimp Postlarvae Culture, Thimmalapura Devaraja, Sanjoy Banerjee, Fatimah Yusoff, Mohamed Shariff, Helena Khatoon

Turkish Journal of Biology

Indigenous Bacillus pumilus, B. licheniformis, and B. subtilis were isolated from marine water and soil samples and investigated for potential bioremediation ability in Penaeus monodon culture. Bacillus spp. were selected based on their wide range of growth conditions, ease of mass culture, tolerance to total ammonia nitrogen (TAN), inhibition of pathogenic vibrios, nonpathogenicity, and ability to reduce TAN. Results showed that optimum growth of the selected Bacillus spp. occurred at 30 °C, pH 7.5, and 1.5% NaCl, and they secreted protease, amylase, and lipase. Vibrio spp. were also inhibited by 3 Bacillus spp. In addition, the selected Bacillus spp. had …

Antioxidant Activity Of In Vitro Propagated Stevia Rebaudiana Bertoni Plants Of Different Origins, Ely Zayova, Ira Stancheva, Maria Geneva, Maria Petrova, Lyudmila Dimitrova

Turkish Journal of Biology

An efficient in vitro protocol for propagation of Stevia rebaudiana Bertoni is described. Multiple shoots were induced in vitro from shoot tip and nodal segments on Murashige and Skoog medium containing 6-benzylaminopurine, zeatin, or thidiazuron alone and in combination with naphthalene acetic acid or indole-3-acetic acid. A high frequency of shoot induction as well as maximum number of shoots per shoot tip explant was observed on Murashige and Skoog medium supplemented with 6-benzylaminopurine (1.0 mg L^{-1}) alone and combined with indole-3-acetic acid (0.1 mg L^{-1}). For root induction, in vitro shoots were transferred to rooting media containing naphthalene acetic acid, …