Group And State-Specific Estimation In Animal Movement Models Using A Bayesian Approach, Anita Bhandari Sharma

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

This research study investigates statistical approaches for modeling the movement patterns of white-tailed deer in Louisiana using GPS tracking data. We start by classifying the latent behavioral states using a hidden Markov model (HMM) and then integrate those inferred states into a state-dependent step selection framework to evaluate the land cover preferences. Standard HMMs, however, assume the same movement patterns for all animals, overlooking the differences due to characteristics such as sex, age, breeding season, etc.

To address this limitation, we extend the modeling framework to incorporate the group-level structure defined by similar characteristics or conditions to assess whether such …

Mapping Global Research On Mycotoxins In Aquafeed From Scientometric And Critical Perspectives, Menaga Meenakshisundaram, Sudarshan Shanmugam, Jimmy B. Mboya, Felix Sugantham, Kevin Obiero, Jonathan Munguti, Sunday Ekesi, Sevgan Subramanian, Shaphan Y. Chia, Dennis Beesigamukama, Rodrigue Yossa, Chrysantus M. Tanga

All Peer-Reviewed Publications

The global significance of mycotoxins in aquaculture is evident. However, regional vulnerabilities, effects, and inconsistent regulations on mycotoxin contamination remain underexplored. This study integrates a scientometric analysis of research on mycotoxins in aquafeed, published from 1992 to 2023 in Web of Science, with a conventional review of their occurrence in aquafeed and feed ingredients. Bibliometric tools, VOSviewer, and biblioshiny, were used to analyze global research trends, collaborations, and themes. We found a total of 181 publications, authored by 938 researchers from 49 countries, with Brazil leading (25 publications). The Toxins journal accounted for the most publications (23). Aflatoxins, particularly aflatoxin …

Unraveling The Potential Of Black Soldier Fly Larvae As A Sustainable Protein Source For Nile Tilapia Production In Diverse Aquaculture Systems, Jonathan Munguti, Mavindu Muthoka, Jimmy B. Mboya, Domitila Kyule, Menaga Meenakshisundaram, Chrysantus M. Tanga

All Peer-Reviewed Publications

Aquaculture plays a critical role in global food security, with Nile tilapia (Oreochromis niloticus) recognized for its adaptability and robust growth. However, traditional feeds, heavily reliant on fishmeal (FM) and soybean meal, face economic and environmental challenges. In response, black soldier fly larvae meal (BSFLM) has emerged as a promising, nutrient-dense alternative. This review synthesizes existing literature on BSFLM’s nutritional profile and its suitability for Nile tilapia diets, while acknowledging that the data come from diverse independent studies conducted under varying environmental conditions and husbandry practices. BSFLM consistently provides high-quality protein (29.9%–48.2%), aligning with tilapia’s requirements, and is rich in …

Monograph Available: Urban Coyotes As A Source Of Conflict With Humans: An Evaluation Of Common Management Practices

Human–Wildlife Interactions

This is an announcement about the published monograph titled "Urban Coyotes as a Source of Conflict with Humans: An Evaluation of Common Management Practices." This publication, part of the HWI Monograph Series, is online and open access.

Exploring Mating Patterns: The Interplay Of Genes, Environment, And Their Evolutionary Outcomes, Sanduni Talagala

Theses and Dissertations (Comprehensive)

There is great variation in the reproductive tactics exhibited both between and within different species, which is reflected in how individuals engage in mate assessment, mate choice and offspring production. It is therefore important to understand general mating patterns of populations, the factors that influence these mating patterns, and the consequences they carry, in order to get a more holistic understanding of mating systems. This doctoral research represents a multi-pronged investigation of the factors shaping mating patterns and their consequences, how environmental factors influence mating patterns, and how both genotypes and the environment interact to influence mate choice decisions and …

The Intermediate And Remote Effects Of Acute Juvenile Stress Upon Auditory Fear Learning, Recognition Memory, And Anxiety Measures In A Rodent Model Of Ptsd, Laura J. Baron

Electronic Theses & Dissertations (2024 - present)

Abstract

Early-life stress is a risk factor for increased susceptibility to stress- and trauma-related disorders, including Posttraumatic Stress Disorder (PTSD). PTSD is characterized by exposure to trauma that results in exaggerated and extinction-resistant fear responses that persist for over a month. Understanding how the severity of early-life stressors in animal models impacts adult behavior, cognition, and underlying neurobiology could aid in the development of more effective PTSD treatments.

Various early-life stress models, especially in infant rats, have been used to induce stress and assess PTSD like-symptoms. Different stressors impact short- and long-term behavior, with some effects influenced by developmental timing …

Marine And Freshwater Habitats Used By Sympatric Anadromous Arctic Char (Salvelinus Alpinus) And Dolly Varden (S. Malma Malma) In The Central Canadian Arctic, Simon W. Depasquale Mr.

Theses and Dissertations (Comprehensive)

Two closely related but distinct species of char, Arctic Char (Salvelinus alpinus) and Dolly Varden (S. malma), are critically important to the food security and culture of Indigenous peoples in northern North America. Subsistence Inuit fishers in Kugluktuk, NU, Canada, have noticed changes in the timing and locations of their catches of char in the past ~ 10 years. In response, an ongoing partnered research program between the Kugluktuk Hunters and Trappers Organization (HTO) and scientists was formed to study Arctic Char and northern form Dolly Varden (S. malma malma). Char research near Kugluktuk presents a unique opportunity to further …

Editorial, Daniel Gonzalez-Socoloske, Miriam Marmontel [email protected]

Faculty Publications

No abstract provided.

Severe Aggression Among Zoo-Housed Coconut (Trichoglossus Haematodus) And Rainbow (Trichoglossus Moluccanus) Lorikeets: Wellbeing Considerations For Free-Flight Aviaries, Emily Simkins

UNF Graduate Theses and Dissertations

As conservation and education institutions, modern zoos balance the needs of animals with the interests of visitors through several strategies which can increase animal wellbeing and improve visitor experience. Environmental enrichment is frequently employed to increase the suitability of anthropogenic environments for zoo-housed animals, such as through walkthrough habitats and free-flight aviaries. While habitats such as these are important for visitor experience and can be enriching to animals, there are also wellbeing considerations for these spaces. Walkthrough habitats can be a potential source of fear and stress for animals, as shown by increased frequencies of vigilance, undesirable behavior, and aggression. …

Color Development Of Direct Acidified Pork Sausage Containing Alternative Curing And Reducing Agents, Jacob R. Tuell, Harley Francis, Sydney Bentz, Ashley R. Pitti, Morgan L. Denzer, Derico Setyabrata

Animal Science Faculty Publications and Presentations

This study evaluated the inclusion of preconverted alternative cures (celery powder [CELERY], beet powder [BEET]) compared to conventional sodium nitrite (NaNO2 [NITRITE]) formulated to 125 ppm of ingoing nitrite (NO2) in pork sausage acidified with encapsulated citric acid. Formulations included cherry powder (CHERRY) at 1000 ppm as an alternative cure accelerator, conventional sodium erythorbate (ERYTH) at 547 ppm, or no cure accelerator (NONE). The application of a holding period (OVERNIGHT) or not (IMMEDIATE) prior to thermal processing was evaluated. Batches (n = 3) were prepared in a 3 x 3 x 2 factorial arrangement of cures, accelerators, and holding periods. …

From Sequencing To Conservation: Genomic Analysis Of Three Sportfish Species In West Virginia, Andrew Johnson

Graduate Theses, Dissertations, and Problem Reports (ETD)

Situated in the Appalachian Mountains, one of the oldest mountain ranges on Earth, West Virginia waters boast rich ichthyofauna including native sportfish species walleye (Sander vitreus), largemouth bass (Micropterus nigricans), and muskellunge (Esox masquinongy). These three species are all native to the contemporary Ohio River watershed and play a major recreational and ecological role in local fisheries. Ecologically, all three species are apex predators and play a key role in ecosystems by directly influencing local fish assemblages. As dominant apex predators all three species are highly sought after in recreational fisheries with largemouth bass …

Microbial And Plant Biodiversity In Appalachian Agroecosystems And Their Implications For Soil Health, Kinsey Reed Close

Graduate Theses, Dissertations, and Problem Reports (ETD)

The sustainability of agricultural landscapes depends on understanding the complex interactions between plants, soil, and microbes. In Appalachia, a region shaped by complex terrain and long histories of human and ecological interaction, small family farms produce hay, livestock, and row crops. These agroecosystems, though often treated as “artificial” by many ecologists, have the potential to support both food production and biodiversity conservation if managed with an understanding of ecological complexity. This dissertation examines how plant and microbial diversity interact with soil and management to influence nutrient cycling, soil health, and long-term resilience in Appalachian agricultural systems. A literature review revealed …

Effects Of Environmental And Anthropogenic Gradients On Fish Beta Diversity In Central Appalachian Streams, Alanna Kaylee Lowther Smith

Graduate Theses, Dissertations, and Problem Reports (ETD)

Understanding the environmental and spatial drivers of community composition is essential for conserving freshwater biodiversity. We examined how environmental gradients, land cover, and spatial structure influence fish beta diversity in wadeable streams across West Virginia, USA. We quantified total beta diversity and partitioned it into species replacement and richness difference components and used local contributions to beta diversity (LCBD) to identify compositionally unique sites. Community–environment relationships were evaluated with distance-based redundancy analysis (dbRDA), and a beta regression GLMM was used to test how elevation, slope, land cover, and stream order (factor) predicted LCBD while accounting for spatial structure (dbMEMs) and …

Comparing Microct Staining And Scanning Methodology For Brain Studies In Various Sizes Of Spiders, Vanessa Penna-Gonçalves, Nikolas J. Willmott, Michael B.J. Kelly, Jay R. Black, Elizabeth C. Lowe, Marie E. Herberstein

Research outputs 2022 to 2026

Recent advances in microCT are facilitating the investigation of microstructures in spiders and insects leading to an increased number of studies investigating their neuroanatomy. Although microCT is a powerful tool, its effectiveness depends on appropriate tissue preparation and scan settings, particularly for soft, non-sclerotized tissues, such as muscles, organs, and neural tissues. As the application of microCT in spiders is only in its infancy, published protocols are often difficult to implement due to substantial size variation of the specimens. The present study was initiated to determine how to account for this variation. Our work builds on previous methods using microCT …

Identifying Patterns In Avian Plasma Metabolites For Use In Comparing Between-Site Differences In Habitat Quality, Katherine A. Brouwer

Dissertations, Master's Theses and Master's Reports

Habitat loss and degradation are especially important considerations for migratory songbirds, since they depend on a variety of distinct habitats within different life phases (such as breeding, wintering, and migration) that are widely dispersed across a spatial scale. Additionally, abundance of migratory songbirds has been in severe decline, making habitat maintenance and recovery of particular interest as a research avenue. Identifying high quality habitats across a bird’s annual range is therefore of increasing importance and represents fundamental information for guiding management decision making. Free-floating metabolites found in blood are frequently used to determine short-term mass changes in birds and have …

Predation Of A Sperm Whale (Physeter Macrocephalus) By Killer Whales (Orcinus Orca) In Guanaja, Honduras, Gaby M. Ochoa, Eric Angel Ramos, Daniel Gonzalez-Socoloske

Faculty Publications

No abstract provided.

Volumetric Comparison Of Overall Brain And Neuropil Size Between Social And Non-Social Spiders: Exploring The Social Brain Hypothesis, Vanessa Penna-Gonçalves, Donald James Mclean, Nikolas J. Willmott, Michael B.J. Kelly, Jay R. Black, Elizabeth C. Lowe, Marie E. Herberstein

Research outputs 2022 to 2026

The social brain hypothesis predicts that the relative size of specific brain regions is driven by the cognitive capacity required to manage complex (social) situations. Spiders are intriguing models to test this hypothesis, as sociality is rare in this usually solitary and aggressive group. Here, we used microCT to compare the central nervous system and brain volumes between social and solitary females of the species in two taxonomic groups, huntsman and crab spiders. Overall, we found no difference in relative CNS and brain volume between social and solitary species. However, social huntsman spiders Delena cancerides had larger arcuate and mushroom …

Diverged Populations Admixture Bolsters Genetic Diversity Of A New Island Dibbler (Parantechinus Apicalis) Population, But Does Not Prevent Subsequent Loss Of Genetic Variation, Rujiporn Thavornkanlapachai, Harriet R. Mills, Kym Ottewell, Cathy Lambert, J. Anthony Friend, Daniel J. White, Zahra Aisya, W. Jason Kennington

Research outputs 2022 to 2026

Translocating individuals from multiple source populations is one way to bolster genetic variation and avoid inbreeding in newly established populations. However, mixing isolated populations, especially from islands, can potentially lead to outbreeding depression and/or assortative mating, which may limit interbreeding between source populations. Here, we investigated genetic consequences of mixing individuals from two island populations of the dibbler (Parantechinus apicalis) in an island translocation. Despite a high level of genetic divergence between the source populations (FST ranges 0.33–0.64), and significant differences in body size, individuals with different ancestries were able to successfully interbreed in captivity and in the wild. However, …

Home Range, Habitat Use, And Fall Migration Of Lewis’S Woodpeckers In The Eastern Cascade Range, Oregon, Cameron Piper

Cal Poly Humboldt theses and projects

Lewis’s woodpecker (Melanerpes lewis), a burn specialist, is experiencing range-wide population declines despite increasing fire activity in the western U.S. The White River Wildlife Area in Oregon hosts the state's only year-round population, raising questions about their breeding, habitat use, and migration. In summer 2024, we tracked nine woodpeckers using telemetry to estimate home range size and overlap. Full home ranges averaged 428 ha, with 66 ha core areas, and showed evidence of growing after nesting. Home ranges overlapped extensively (Full: 91 ± 13%; Core: 63 ± 29%), though individuals had distinct areas of intense use. Males had …

Ocean Acidification Mitigation: Potential Expansion Of Sav Restoration Strategy In The Chesapeake Bay, Cree N. Taylor

Undergraduate Research Posters

Zostera marina is a species of marine macrophyte that has been largely prioritized in past submerged aquatic vegetation (SAV) restoration initiatives within the Chesapeake Bay because of its 1) previous abundance, 2) demonstrated carbon burial abilities, and 3) observed ability for meadows of Z. marina to ameliorate low pH conditions. Due to the temperature variability and poor water quality associated with anthropogenic disturbances in the Chesapeake Bay, Z. Marina beds have experienced several die-off events with limited capacity for regrowth. This systematic review explored the possible benefits of focusing future SAV recovery initiatives on ensuring a diverse variety of SAV …

Dental Remains Of Pachyportax (Bovidae) From Late Miocene Deposits Of Jhelum, Punjab, Pakistan, Saira Ashfaq, Muhammad Rizwan, Maryam Mushtaq, Umar Naveed Saqib, Sheraz Khan, Hifza Zahid, Muhammad Arshaid, Tabassum Nawaz

Journal of Bioresource Management

The upper Dhok Pathan Formation is characterized to newly found Pachyportax fossils from Late Miocene outcrops in the Hasnot region. The discovered dental remains of Pachyportax include upper and lower molars. Based on morphometry, the examined tooth material was identified, and the specimens were categorized as Pachyportax latidens and Pachyportax nagri. A well-known example is Pachyportax latidens, but Pachyportax nagrii stands out due to its rare fossil record from the middle Siwaliks. Potwar Pleateu is the most productive region for the deposition of vertebrate fossils (Pilbeam et al., 1979; Badgley et al., 2008). Bovids in open environments are …

Bioresource Management Via Least Cost Feed Formulation For Red Tilapia (Oreochromis Sp.): Application Of Linear Programming Technique, Boudjema Kamel, Redhouane Benfares, Affaf Kord, Toufik Milla, Belkacem Guenachi, Lynda Frai, Rachida Itcher, Hocine Kherzane

Journal of Bioresource Management

The method of linear programming (LP) was utilized to determine the relationship between the composition of nutrients of each ingredients, specifications for raw materials, cost and requirements for nutrients of the red tilapia (Oreochromis sp.), in order to define: (1) least cost ration formulation, (2) least cost diet, (3) minimum price of producing a particular diet after meeting a number of requirements. The resulting LP models were solved using the simplex algorithm. Therefore, our results show that, formulated feed had high protein content (31.92 %), Lipid (2.53), Moisture (9.10 %) and Ash (9.00 %). The utilization of diet …

Farrowing Performance And Piglet Characteristics Of Highly Prolific Sows In A Tropical Environment, Yosua Kristian Adi, Roy N. Kirkwood, Padet Tummaruk

The Thai Journal of Veterinary Medicine

The swine industry has witnessed a remarkable increase in average litter size in recent decades, driven by genetic advancements and breeding programs aimed at enhancing prolificacy. This rise in hyperprolificacy has presented both opportunities and challenges, particularly in tropical environments where factors such as ambient temperature and humidity can influence reproductive performance. This review synthesizes current knowledge on farrowing performance and piglet characteristics of highly prolific sows in tropical settings. Studies have reported a consistent increase in litter size globally, leading to challenges in farrowing management and piglet survival. Factors such as elevated ambient temperatures and extended farrowing durations have …

Scorpiops Reini Sp. N. From Yunnan, China (Scorpiones: Scorpiopidae), Victoria Tang

Euscorpius

Scorpiops reini sp. n. is described from Yingjiang County (Dehong Prefecture, Yunnan Province) based on an adult pair. It can be readily discriminated from all of its congeneric geographic neighbors in Yunnan, namely S. jendeki Kovařík, 1994, S. shidian (Zhu et al., 2005), S. tongtongi Tang, 2022, and S. zhangshuyuani (Ythier, 2019). Within Yunnan, it resembles S. validus (Di et al., 2010) and S. yangi (Zhu et al., 2007) most, but can be identified by its large median ocelli (relative to the width of ocular subislet), pedipalp chelal finger morphology and pectinal tooth count. Beyond Yunnan, it shows the highest …

Native Freshwater Mussel Communities In The Lower Grand River, Michigan: Assessing Tributary Confluence Effects And Updating Survey Information, Grayson L. Kosak

Masters Theses

Freshwater mussels (Unionidae) are ecosystem engineers and keystone species vital to stream ecosystems yet represent the most imperiled group of freshwater fauna. Conservation of unionids necessitates further understanding how assemblages interact with watershed features. This study investigates mussel occupancy, distribution, and assemblage structure upstream and downstream of tributary confluences in the lower Grand River, Michigan, alongside updated surveys of the unionid community with comparisons to previous assessments conducted by Michigan Natural Features Inventory (MNFI) in 2002–2003. Unionid density, richness, and diversity were greater upstream of confluences. No significant distance-gradient effects were observed. Assemblage structure differed between upstream and downstream reaches …

A Meta-Analysis Of Seafood Species Mislabeling In The United States, Sarah Ahles, Christina A. Mireles Dewitt, Rosalee S. Hellberg

Food Science Faculty Articles and Research

Seafood is vulnerable to mislabeling due to complex global supply chains, varying prices, and the similar appearance of species. While numerous studies have been published on seafood mislabeling, the focus is often on species known to be commonly substituted. Therefore, the overall mislabeling rates of seafood sold in the U.S. remain unknown, especially for the most consumed species. The objective of the current study was to compile the results of seafood mislabeling studies into a single resource to provide informative statistics on U.S. seafood mislabeling. A meta-analysis was conducted on U.S. seafood mislabeling studies that tested commercial samples of bony …

Administering Tolfenamic Acid To Gilts And Sows Before Artificial Insemination Did Not Improve Litter Size But Tended To Reduce Post-Service Serum Prostaglandin F2Α Levels, Pachara Pearodwong, Nithitad Jiebna, Padet Tummaruk

The Thai Journal of Veterinary Medicine

This study examined the impact of intramuscular administration of tolfenamic acid 10 min before artificial insemination (AI) on serum PGF2α levels and reproductive performance in gilts and sows. In Experiment I, 20 gilts were divided into two groups: control (n = 10) and treatment (n = 10). Serum samples were collected 30 min before and after insemination to measure PGF2α levels. In Experiment II, 175 gilts and sows were divided into control (25 gilts and 56 sows) and treatment (16 gilts and 78 sows) groups. In both experiments, the treatment group received an intramuscular injection of 2 mg/kg tolfenamic acid …

Star-Studded Stingers: Fluorescent Sensilla On The Scorpion Aculeus (Arachnida: Scorpiones), Graeme Lowe

Euscorpius

The aculeus of the scorpion telson was studied by UV fluorescence microscopy. Numerous brightly fluorescent punctae were observed on the non-fluorescent distal aculeus, including the tip region. The punctae were identified as aculear sensilla coeloconica (ASC), and were connected to fluorescent canals running through the cuticle. ASC were present in both sexes, and in adults and immatures as early as the second juvenile instar, but were absent from the first instar. The distal aculeus was found to be encased in a thick, non-fluorescent dark exocuticle (DX), covering an underlying thin, fluorescent hyaline exocuticle (HX). Fluorescent ASC were recorded from 183 …

Social Learning And Cultural Enrichment For Fish Welfare, Chiawen Chiang, Becca Franks

Animal Sentience

This commentary examines how understanding animal culture—shared behaviors and knowledge transmitted through social learning—plays a role in advancing welfare practices for captive fishes. Despite extensive evidence of fishes' complex sociocultural capacities, their psycho-social needs remain underestimated and unmet in zoos and aquaria. We explore what considering fish culture might mean for welfare practices: diverse social learning opportunities, cultural development, and thoughtful group management. More knowledge about wild fishes' lives will help bridge the gap between their full, complex lives and current captive welfare practices.

Using Bivalves As An Indicator For Fecal Bacteria, Kamala Chuss

Honors Scholar Theses

This project focuses on the integration of fecal bacteria from warm-blooded animals into bivalve tissue, and the utilization of bivalves as an indicator for fecal bacteria in waterways. Bivalves may give a more representative long-term average of fecal bacteria in water as compared to direct water testing. The primary objective is to create a standard operating procedure to use bacterial testing of bivalves as a proxy for bacteria concentration in the water. This method can be used in places where bivalves do not already exist by adding them to a body of water, or by collecting bivalves that already exist …