Digital Commons Network^™

A Review Of Climate Change Induced Effects On Avian Prey Species And Their Consequences For Arctic Fox Populations Of Western Iceland, Mikala Jordan

Independent Study Project (ISP) Collection

Island arctic fox populations are considered to carry the future wellbeing of the global population. Iceland has an island population with two arctic fox eco-types: western/coastal and eastern/inland. The western fox population is protected by the Hornstrandir Nature Reserve; no such protection exists for the eastern fox population. Food sources in both regions differ from each other and vary from summer to winter, but reliable and ample winter time food sources are the most critical for fox population’s survival. A literature review on arctic foxes and their prey species in the face of climate change is important for understanding possible …

Resource Quality And Defense: Feeding Behaviors And Female Territoriality In Two Species Of Tropical Hummingbird, Briana Grether

Independent Study Project (ISP) Collection

The study "Resource Quality and Defense: Feeding Behaviors and Female Territoriality in Two Species of Tropical Hummingbird" investigates the feeding behaviors and territoriality of hummingbirds at a flowering shrub of the Gesneriaceae family, Besleria solanoides. Four 1.25-hour observation periods were completed each day, rotating between four different observation sites. During each observation period, the sugar concentration of nectar and number of flowers on each bush was measured, and each time a hummingbird entered the area the following data was recorded: species, sex, time of arrival, duration of visit, number of flowers probed, number of perches, duration of longest perches, any …

Humanity Balancing On A Turtle’S Back: Perceptions And Values Of Sea Turtle Conservation Among Different Demographics At Four Sites In The Bocas Del Toro Archipelago Bocas Del Toro, Panama, Roxanne Hoorn

Independent Study Project (ISP) Collection

Being the ancient, world traveling, iconic mega-fauna they are, sea turtles have found their way into cultures and traditions around the world, often holding great prestige. Along with their mystical qualities, sea turtles have also been intricately intertwined in the livelihoods of cultures around the globe, utilized for food, jewelry, income, and more recently, scientific research. The ways in which humans around the world perceive the value of this species varies greatly, often causing conflict between those who wish to protect and conserve sea turtles, and those looking to continue using turtles as either a source of income or food. …

Harpy Eagle (Harpia Harpyja) Conservation: Juvenile Behavior And Diet At A Nest Near Pijibasal, Darien, Hannah Rodgers

Independent Study Project (ISP) Collection

The Harpy Eagle (Harpia harpyja), the largest and most powerful bird of prey in the Americas, is declining throughout its range in Neotropical forests. Hunting and deforestation threaten populations in the most important remaining eagle habitat in Central America, the Darien province of Panama. These eagles may have the longest postfledging juvenile dependency of any raptor, though juvenile behavior during this period is poorly studied. This study monitored an 11-month-old juvenile for 7 days at a nest near the indigenous community of Pijibasal in order to study behavior and diet. Researchers recorded the juvenile’s location and behavior, studied prey remains …

Benthic Algae And Diatom Communities In Seagrass Meadows Under Three Different Human Impact Regimes In Bocas Del Toro, Panamá, Averyl Cheng

Independent Study Project (ISP) Collection

In Bocas del Toro, Panamá, widespread tourism has been the main source of revenue and has become an increasing threat to seagrass meadows and the organisms they support. This study aimed to investigate and describe algae and diatom communities under three different regimes of anthropogenic disturbance: high, medium and low human impact. The biodiversity was analyzed by measuring the algae and diatom assemblages with Shannon-Weiner’s Biodiversity Index, Evenness Index and Sorensen’s coefficient. The data obtained from these three diversity indices were compared to the areas along an anthropogenic disturbance gradient of high, medium and low impact. A total of 12 …

The Effects Of Sub-Lethal Predation On The Reproductive Output Of Acanthaster Planci (Crown-Of-Thorns Starfish), Emily Mucha

Independent Study Project (ISP) Collection

Wide-scale declines in live coral cover have been observed throughout history. Modern day coral populations face a multitude of environmental disturbances, however one of the most devastating to the reefs in the Indo-Pacific is the crown-of-thorns starfish (Acanthaster planci), which feeds on the tissues of live corals. The rate at which these individuals feed combined with the explosion of populations in times of outbreak have been seen to exert some of the biggest pressures on coral reefs to date. Following recent episodes of crown-of-thorns starfish (COTS) outbreaks, research on the organism has become increasingly prevalent on the scientific …

Conservation As Mutualism: A Case Study Of Thulo Syafru, Jennifer S. Brady

Independent Study Project (ISP) Collection

This study examined the opinions, perceptions, and knowledge of residents of Thulo Syafru, a small village in the buffer zone of Langtang National Park, Nepal, regarding conservation efforts spearheaded by the Department of National Parks and Wildlife Conservation and the World Wide Fund for Nature. 26 community members were interviewed along with key figures in community leadership and the two aforementioned organizations. Thulo Syafru is an essential location for red panda conservation, leading to many conservation efforts being focused in the area. Overall, people expressed very positive opinions regarding red pandas and their protection, positive attitudes about conservation, and appreciation …

Phylogeny, Systematics And Biogeography Of Short-Tailed Opossums (Didelphidae: Monodelphis), Silvia E. Pavan

Dissertations, Theses, and Capstone Projects

Short-tailed opossums (genus Monodelphis) comprise the most species-rich genus of New World marsupials, with 25 currently recognized species. Monodelphis comprise small, terrestrial species collectively widespread in South America, which makes the group potentially informative about biogeographic processes that have shaped the continental fauna. The genus exhibits striking variation in several phenotypic characters, notably pelage coloration, behavior, and reproductive strategies. This diversity is unique among Neotropical marsupials, and makes the group particularly interesting to investigate the evolution and the adaptive significance of phenotypic trait variation. Despite this potential, missing knowledge on phylogeny and basic taxonomy precludes broader studies on evolution …

Viral Zoonoses That Fly With Bats: A Review, Alfonso Calderon, Camilo Guzman, Jorge Salazar-Bravo, Luiz Tadeu Figueiredo, Salim Mattar, German Arrieta

MANTER: Journal of Parasite Biodiversity

Emerging infectious diseases are a growing threat to human health and a great challenge for global medical attention systems. Governmental agencies in tropical regions with abundant zoonotic pathogens should implement an active vigilance/monitoring model in bat reservoir populations because of their species richness, abundance and dispersal capabilities. Chiropterans represent approximately 20% of all mammal species, the second largest order in terms of number of species after rodents. Importantly, bats constitute natural reservoirs for potential infection of humans of several infectious disease agents such as Coronavirus, Filovirus, Lyssavirus, Paramyxovirus, and Flavivirus. Local disease outbreaks caused by new pathogens can …

The Role Of Individual Cognitive And Behavioral Ontogeny In Organization And Evolution Of Social Systems, Andrew G. Fulmer

Dissertations, Theses, and Capstone Projects

Exploration and explanation of the relationship between individual variation in behavior and the composition and adaptive success of social groups or populations are crucial problems in the fields of behavioral ecology, ethology, and comparative psychology. These questions have been the subject of a longstanding discussion at both the proximate and ultimate levels of inquiry. Adaptive mechanisms explaining social decision making, both in terms of affiliative and competitive partner choices, are at the center of such discussions. Inclusive fitness, kin-selection, handicap or prestige, risk seeking and risk avoiding strategies, pay-to-stay/reward principles, as well as other theories have been proposed and supported …

Cognitive Dissonance Or Contrast?, Thomas R. Zentall

Animal Sentience

According to Festinger (1957), cognitive dissonance occurs when one’s behavior or belief is inconsistent with another belief and one modifies one of the beliefs in an attempt to reduce the dissonance. In nonhuman animals, we have examined a version of human cognitive dissonance theory called justification of effort, according to which the value of reward following more difficult tasks increases, presumably to justify (to oneself or to others) performing the more difficult task. We have examined the justification of effort effect in animals and found a pattern similar to the one in humans but we propose a simpler underlying …

A Novel Qtl Associated With Dwarf Bunt Resistance In Idaho 444 Winter Wheat, Jianli Chen, Mary J. Guttieri, Junli Zhang, David Hole, Edward Souza, Blair Goates

Green Canyon Environmental Research Area, Logan Utah

Dwarf bunt [Tilletia controversa J.G. Kühn [as ‘contraversa’], in Rabenhorst, Hedwigia 13: 188 (1874)] is a destructive disease of wheat (Triticum aestivum L.) that reduces grain yield and quality. A number of distinct genes conferring resistance to dwarf bunt have been used by breeding programs for nearly 100 years. However, few markers were identified that can be used in selection of dwarf bunt resistance. A recombinant inbred line (RIL) population derived from the bunt-resistant germplasm, Idaho 444 (IDO444), and the susceptible cultivar, Rio Blanco, was evaluated for phenotypic reaction to dwarf bunt inoculation in four trials in …

Inquiry-Based Science Communication Using Plant And Animal Systems, Tiffany Heng-Moss

SciComm 2016 - Lincoln, Nebraska, September 23-24, 2016

Programs:

Our Zoo to YOU: Unique partnership: Nebraska Schools, science educators, scientists, and the Lincoln Children’s Zoo. To provide elementary and middle school educators with a unique opportunity to teach inquiry-based science with live animals. Focus on both teachers and students

Soybeans in the Classroom Research Experience for Teachers--Transformative model of education and professional development focused on: • Systems-approach • Science as inquiry • Integration of agricultural systems as vehicles for science education

Science as Inquiry

Vegetarian Versus Meat-Based Diets For Companion Animals, Andrew Knight, Madelaine Leitsberger

Nutrition Collection

Companion animal owners are increasingly concerned about the links between degenerative health conditions, farm animal welfare problems, environmental degradation, fertilizers and herbicides, climate change, and causative factors; such as animal farming and the consumption of animal products. Accordingly, many owners are increasingly interested in vegetarian diets for themselves and their companion animals. However, are vegetarian canine and feline diets nutritious and safe? Four studies assessing the nutritional soundness of these diets were reviewed, and manufacturer responses to the most recent studies are provided. Additional reviewed studies examined the nutritional soundness of commercial meat-based diets and the health status of cats …

A Novel Benzodiazepine Compound Inhibits Yellow Fever Virus Infection By Specifically Targeting Ns4b Protein, Fang Guo, Shuo Wu, Justin Julander, Julia Ma, Xuexiang Zhang, John Kulp, Andrea Cuconati, Timothy M. Block, Yanming Du, Ju-Tao Guo, Jinhong Chang

Animal, Dairy, and Veterinary Science Faculty Publications

Although a highly effective vaccine is available, the number of yellow fever cases has increased over the past 2 decades, which highlights the pressing need for antiviral therapeutics. In a high-throughput screening campaign, we identified an acetic acid benzodiazepine (BDAA) compound which potently inhibits yellow fever virus (YFV). Interestingly, while treatment of YFV-infected cultures with 2 MBDAA reduced the virion production by greater than 2 logs, the compound was not active against 21 other viruses from 14 different viral families. Selection and genetic analysis of drug-resistant viruses revealed that replacement of the proline at amino acid 219 (P219) of the …

Large Animal Genetic Engineering Summit 2016 Proceedings, Utah State University

Animal, Dairy, and Veterinary Science Faculty Publications

It is our great pleasure to welcome you to the first Large Animal Genetic Engineering (LAGE) Summit. Our objectives for the summit are twofold: 1) to provide an update on new approaches to the genetic modification of large animal species for development of better animal models for biomedical research, biomanufacturing, and improved agricultural production; and 2) to provide a forum for discussions on funding mechanisms and regulations effecting development of genetically engineered large animals. Our first summit is being held in Bethesda, Maryland, to facilitate participation by representatives from various federal agencies who either fund or regulate the production of …

Darwin’S Empirical Evidence, Maxine Sheets-Johnstone

Animal Sentience

Darwin’s extensive writings may seem antiquated to current thinkers with their predilections for cognitive science, neuroscience, and analytic branches of philosophy. He showed that morphologies are not simply taxonomic distinctions that allow classification into species. They describe living animals, hence morphologies-in-motion: animate forms of life engaged in synergies of meaningful movement, all of which are testimony to animal sentience.

Animal Personhood Is An Evolutionary Issue, James E. King

Animal Sentience

The Rowlands target article makes a case, based on John Locke’s metaphysical argument, that personhood can be applied to many species beyond a few nonhuman primates. The problem with this argument is that personhood has an open-ended list of defining attributes and can, at best only be partially applied to nonhuman species. Therefore, a dichotomous distinction cannot be made between qualifying and non-qualifying species. Instead, between-species comparisons must be based on observational and experimental procedures to demonstrate the extent to which human mental attributes are shared with other species. This would allow a more informed view about the appropriateness of …

Temporal Regularity Increases With Repertoire Complexity In The Australian Pied Butcherbird’S Song, Eathan Janney, Hollis Taylor, Constance Scharff, David Rothenberg, Lucas C. Parra, Ofer Tchernichovski

Publications and Research

Music maintains a characteristic balance between repetition and novelty. Here, we report a similar balance in singing performances of free-living Australian pied butcherbirds. Their songs include many phrase types. The more phrase types in a bird’s repertoire, the more diverse the singing performance can be. However, without sufficient temporal organization, avian listeners may find diverse singing performances difficult to perceive and memorize. We tested for a correlation between the complexity of song repertoire and the temporal regularity of singing performance. We found that different phrase types often share motifs (notes or stereotyped groups of notes). These shared motifs reappeared in …

Another New Species Of Euscorpius Thorell, 1876 From The Taurus Mountains In Antalya Province, Southern Turkey (Scorpiones: Euscorpiidae), Gioele Tropea, Ersen Aydın Yağmur, Aristeidis Parmakelis, Kadir Boğaç Kunt

Euscorpius

A new scorpion species, Euscorpius alanyaensis sp. n., is described based on specimens collected from the Taurus Mountains in Antalya Province (Alanya District) in southern Turkey. It is a sibling species of the recently described E. gocmeni Tropea et al., 2014, and similarly, the new species is also characterized by a high trichobothrial count (Pv = 9–11, et = 7, em = 4, and eb = 4), a high pectinal teeth count (Dp = 9–11 in males, 8 in females), medium-small size, and light to medium brown-reddish colour. In addition, for the first time a phylogenetic …

De Novo Sequencing, Assembly And Analysis Of Eight Different Transcriptomes From The Malayan Pangolin, Aini Mohamed Yusoff, Tze King Tan, Ranjeev Hari, Klaus-Peter Koepfli, Wei Yee Wee, Agostinho Antunes, Frankie Thomas Sitam, Jeffrine Japning Rovie-Ryan, Kayal Vizi Karuppannan, Guat Jah Wong, Leonard Lipovich, Wesley C. Warren, Stephen J. O'Brien, Siew Woh Choo

Biology Faculty Articles

Pangolins are scale-covered mammals, containing eight endangered species. Maintaining pangolins in captivity is a significant challenge, in part because little is known about their genetics. Here we provide the first large-scale sequencing of the critically endangered Manis javanica transcriptomes from eight different organs using Illumina HiSeq technology, yielding ~75 Giga bases and 89,754 unigenes. We found some unigenes involved in the insect hormone biosynthesis pathway and also 747 lipids metabolism-related unigenes that may be insightful to understand the lipid metabolism system in pangolins. Comparative analysis between M. javanica and other mammals revealed many pangolin-specific genes significantly over-represented in stress-related processes, …

How Could Consciousness Emerge From Adaptive Functioning?, Max Velmans

Animal Sentience

The sudden appearance of consciousness that Reber posits in creatures with flexible cell walls and motility rather than non-flexible cells walls and no motility involves an evolutionary discontinuity. This kind of “miracle” is required by all “discontinuity” theories of consciousness. To avoid miraculous emergence, one may need to consider continuity theories, which accept that different forms of consciousness and material functioning co-evolve but assume the existence of consciousness to be primal in the way that matter and energy are assumed to be primal in physics.

Population Characteristics Of Human-Commensal Rodents Present In Households From Mérida, Yucatán, México, Jesús Alonso Panti-May, Silvia F. Hernández-Betancourt, Marco A. Torres-Castro, Carlos Machaín-Williams, Nohemi Cigarroa-Toledo, Lorenzo Sodá, Gabriela López-Manzanero, Josué R. Meza-Sulú, Victor M. Vidal-Martínez

MANTER: Journal of Parasite Biodiversity

Anthropocommensal rodents live in close proximity to humans in many habitats around the world. They are a threat to public health because of the pathogens they carry. Recent studies in Mérida, Yucatán, México, have shown that commensal rodents harbor potential zoonotic pathogens such as bacteria, helminths, and viruses. In this study, we describe reproductive and demographic parameters of house mice and black rats present in households from Mérida, Yucatán, México, a municipality located in a tropical region in southern México. Rodents were trapped in 142 households within the municipality of Mérida from 2011 to 2014. A total of 832 rodents …

Winter Activity Of Myotis Septentrionalis: Role Of Temperature In Controlling Emergence From A Hibernaculum, Cliff A. Lemen, Patricia Freeman, Jeremy A. White

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

We acoustically monitored a small mine in southeastern Nebraska known to be a hibernaculum for the Northern Long-eared Myotis (Myotis septentrionalis) for two winters (2014-2015 and 2015-2016). Some M. septentrionalis emerged on nights with mild temperatures throughout both winters. There was an 89% probability of detecting this species when temperature at sunset was >5°C. Our results indicated that acoustical surveys outside mines or caves in winter, particularly on nights with mild temperatures, are an effective method of identifying hibernacula of M. septentrionalis and potentially other species without disturbing individuals by entering the hibernaculum or by netting individuals as …

“Cellular Basis Of Consciousness”: Not Just Radical But Wrong, Brian Key

Animal Sentience

Reber (2016) attempts to resuscitate an obscure and outdated hypothesis referred to as the “cellular basis of consciousness” that was originally formulated by the author nearly twenty years ago. This hypothesis proposes that any organism with flexible cell walls, a sensitivity to its surrounds, and the capacity for locomotion will possess the biological foundations of mind and consciousness. Reber seeks to reduce consciousness to a fundamental property inherent to individual cells rather than to centralised nervous systems. This commentary shows how this hypothesis is based on supposition, false premises and a misunderstanding of evolutionary theory. The cellular basis of consciousness …

The Evolutionary History Of Consciousness, Eirik Søvik, Clint Perry

Animal Sentience

Klein & Barron argue that insects are capable of subjective experience, i.e., sentience. Whereas we mostly agree with the conclusion of their arguments, we think there is an even more important message to be learned from their work. The line of reasoning opened by Klein & Barron proves instructive for how neuroscientists can and should explore the biological phenomenon of consciousness.

Beginnings: Physics, Sentience And Luca, Carolyn A. Ristau

Animal Sentience

According to Reber’s model, Cellular Basis of Consciousness (CBC), sentience had its origins in a unicellular organism and is an inherent property of living, mobile organic forms. He argues by analogy to basic physical forces which he considers to be inherent properties of matter; I suggest that they are instead the stuff of scientific investigation in physics. I find no convincing argument that sentience had to begin in endogenously mobile cells, a criterial attribute of the originator cell(s)for sentience according to CBC. Non-endogenously mobile cells, (i.e., plants or precursors) in a moving environment would suffice. Despite my concerns and the …

Might Insects Experience Pain?, Robert W. Elwood

Animal Sentience

The aim of this commentary is to expand the discussion about subjective experience to other arthropods, notably crustaceans. Various species of crustaceans show responses consistent with their feeling pain. Hermit crabs also show prolonged investigation of new shells. They clearly attend to and integrate information from a wide variety of sources that enable them to evaluate the quality of the new shell relative to their current shell. These observations too are consistent with their having subjective experience.

A Species-Level Phylogeny Of Extant Snakes With Description Of A New Colubrid Subfamily And Genus, Alex Figueroa, Alexander D. Mckelvy, L. Lee Grismer, Charles D. Bell, Simon P. Lailvaux

Publications and Research

Background With over 3,500 species encompassing a diverse range of morphologies and ecologies, snakes make up 36% of squamate diversity. Despite several attempts at estimating higherlevel snake relationships and numerous assessments of generic- or species-level phylogenies, a large-scale species-level phylogeny solely focusing on snakes has not been completed. Here, we provide the largest-yet estimate of the snake tree of life using maximum likelihood on a supermatrix of 1745 taxa (1652 snake species + 7 outgroup taxa) and 9,523 base pairs from 10 loci (5 nuclear, 5 mitochondrial), including previously unsequenced genera (2) and species (61).

Results Increased taxon sampling resulted …

Mind/Body “Hard Problem” Is Not A Category Error, Linda A.W. Brakel

Animal Sentience

Reber’s Cellular Basis of Consciousness (CBC) has much to recommend it. However, while the CBC effectively renders null any ontological gap between mind and body, it leaves two important remaining gaps unaddressed: the epistemologic and the causal gap. Brakel’s (2013) Diachronic Conjunctive Token Physicalism (DiCoToP) is briefly introduced as a beginning remedy for the epistemologic, but unfortunately not the causal, gap. Thus the “hard problem” remains both hard and problematic.