Digital Commons Network^™

Just Preservation, Adrian Treves, Francisco J. Santiago-Ávila, William S. Lynn

Animal Sentience

We are failing to protect the biosphere. Novel views of conservation, preservation, and sustainability are surfacing in the wake of consensus about our failures to prevent extinction or slow climate change. We argue that the interests and well-being of non-humans, youth, and future generations of both human and non-human beings (futurity) have too long been ignored in consensus-based, anthropocentric conservation. Consensus-based stakeholder-driven processes disadvantage those absent or without a voice and allow current adult humans and narrow, exploitative interests to dominate decisions about the use of nature over its preservation for futurity of all life. We propose that authentically non-anthropocentric …

Who Needs A Mind When You Have Thousands Of Fingers?, Yoram Gutfreund

Animal Sentience

Mather’s target article aligns with a common tendency of granting the octopus a mind or consciousness. But what is the meaning of an octopus’s mind? Is it part of nature or is it observer-dependent, imputed to satisfy our own psychological needs? In this commentary, I build on my own experience with octopuses to challenge the notion that we can conclusively attribute a mind to an animal; and I question the scientific usefulness of doing so.

Octopus Minds Must Lead To Octopus Ethics, Barbara J. King, Lori Marino

Animal Sentience

Mather argues convincingly for the existence of minds in octopuses based largely on laboratory experiments. Many of these experiments are highly invasive and involve mutilation and death. Moreover, octopuses are now being hailed as a “new model” for biological research and are being enthusiastically bred in captivity, both for research and for food. We argue that the compelling evidence for mind in octopuses must be accompanied by intense scrutiny of the ethics that shape how we treat them and that the intrinsic value of their individual lives must be recognized.

The Perfecting Of The Octopus, Ila France Porcher

Animal Sentience

Cephalopods split away from the phylogenetic tree about half a billion years ago, and octopus evolution has been accelerated by an extremely low survival rate. This helps explain why this unusual animal presents qualities found in no other. It has a radially organized nervous system with a processing centre for each of its eight tentacles. Yet, although this might suggest that each tentacle has its own centre of consciousness, it remains just one animal, with one mouth to feed, and one life to lose, and it behaves as if it is centrally controlled. Its capacity for a range of intelligent …

What We Don't Know About Cephalopods And How To Define It, Catia Correia Caeiro

Animal Sentience

Despite the reputation of octopuses as intelligent animals, their cognitive abilities seem to be mostly unknown. This should be the starting point of a long process of scientific enquiry about these taxa, which must include discussions on operational definitions first and foremost. Discussing octopus mind might prove fruitless without more basic concepts. Some approaches are suggested here.

Thermal Performance Of Growth At Consumption Maximum (C-Max) And Routine Metabolic Rate (Rmr) In Brook Trout Salvelinus Fontinalis From Four Populations In Central Appalachia, Cory Michael Hartman

Graduate Theses, Dissertations, and Problem Reports (ETD)

Growth of an individual is the end result of many physiological processes stemming from the consumption of food items. These processes can be influenced by many variables including temperature. Current bioenergetics models for Brook Trout Salvelinus fontinalis suggest growth increases with temperature until an inflection point of 20.2°C. With a warming climate, and water temperatures expected to rise, the ability of a population to adapt to the warming environment is crucial to the survival of the species. For this study we sought to see how spatial variation would influence the specific consumption, conversion efficiency, and specific growth at consumption maximum …

Population Health Of Spotted Salamanders (Ambystoma Maculatum) In Created Vernal Pools: An Integrative Approach, Alice R. Millikin

Graduate Theses, Dissertations, and Problem Reports (ETD)

Habitat creation is an important tool for conservation to counteract habitat loss and degradation. Vernal pools are susceptible to destruction due to limited detection, protection, and regulation. These wetlands provide fishless breeding habitat for many amphibian species including spotted salamanders (Ambystoma maculatum) in eastern North America. Determining whether created vernal pool habitat is successful is often determined by demographic data of colonizing populations. I suggest that hormone levels, population genetics, and disease prevalence can improve our understanding of population health in created habitat. The goal of this dissertation was to assess the health of spotted salamander larvae in …

Bomb Radiocarbon Age Validation For The Long-Lived, Unexploited Arctic Fish Species Coregonus Clupeaformis, John M. Casselman, Cynthia M. Jones, Steven E. Campana

OES Faculty Publications

The growth rates of freshwater fish in the Arctic would be expected to be very low, but some previous studies of lake whitefish (Coregonus clupeaformis) have reported relatively rapid growth and longevity estimates of less than 15 years. We used bomb radiocarbon chronologies to validate an ageing method based on otolith sections for lake whitefish in both an unexploited Arctic lake (MacAlpine Lake; longevity 50 years) and a lightly exploited temperate population (Lake Simcoe; longevity 49 years). Our results confirm previous suggestions that other ageing methods can seriously underestimate lake whitefish age after ~5–8 years. A Chapman–Robson estimate …

Bird Window Strikes On A College Campus: Mortality Estimates And Possible Mitigation, Antarius D. Mclain

College of Graduate Studies: Theses & Dissertations

Understanding the impact that human development has on wildlife populations is essential to preserving biodiversity. Bird populations are a good indicator of anthropogenic threats because they are sensitive to environmental change. Window strikes are a major source of mortality for bird populations. Studies have begun to monitor factors that cause window strikes and estimate the amount of birds killed annually by strikes. However, these estimates can be greatly affected by site dependent variables and scavenging of carcasses. My study addresses this issue by answering four questions: First, how many birds are killed annually on campus? Second, what factors complicate making …

Tiger Sharks Eat Songbirds: Reply, J. Marcus Drymon, K. Feldheim, A. M.V. Fournier, A. E. Jefferson, A. M. Kroetz, Sean P. Powers, E. A. Seubert

University Faculty and Staff Publications

In response to our recent paper (Drymon et al. 2019), Yosef (2019) questions the mechanism proposed to explain interactions between tiger sharks (Galeocerdo cuvier) and migratory songbirds, while offering an alternative mechanism based on a single observation. We appreciate the comments from Yosef and the opportunity to respond.

Tiger Sharks Eat Songbirds: Scavenging A Windfall Of Nutrients From The Sky, J. Marcus Drymon, K. Feldheim, A. M.V. Fournier, E. A. Seubert, A. E. Jefferson, A. M. Kroetz, Sean P. Powers

University Faculty and Staff Publications

No abstract provided.

Movement Ecology Of A Cryptic Ambush Predator: Integrating Radio Telemetry And Tri-Axial Accelerometry To Evaluate Spatial Strategies And Activity Patterns By Western Diamond-Backed Rattlesnakes (Crotalus Atrox), Dominic L. Desantis

Open Access Theses & Dissertations

An animal's decision to move from one location to another within its environment is determined by a complex blend of internal and external factors. Teasing apart the relative roles of specific variables in this web of interacting mechanisms has been a long-standing challenge in animal movement ecology. Historically, this problem was viewed as a sort of black box for which a myriad of methodological limitations precluded rigorous study. Recently, a diversity of animal-borne transmitters and dataloggers (i.e., bio-loggers) have circumvented many of these traditional limitations and transformed field studies of animal movement, behavior, and physiology - in some cases, allowing …

Growing South Dakota (Winter 2019), College Of Agriculture, Food And Environmental Sciences

Growing South Dakota (Publication of the College of Agriculture, Food and Environmental Sciences)

This is issue contains the South Dakota Agricultural Experiment Station 2018 Annual Report, and the SDSU Extension 2018 Annual Report.

[Page] 2 Setting Into role as Dean
[Page] 4 Raven Precision Ag Center Groundbreaking Ceremony
[Page] 10 Collaborating for Research-Based Solutions
[Page] 12 From the SDSU Extension Director
[Page] 14 Empowering South Dakotans Through Training and Certifications
[Page] 18 Mental Health and Opioid Education
[Page] 21 Science of Agriculture
[Page] 23 Community Gardens Bring Hope to Pine Ridge Indian Reservation
[Page] 26 Energize! Conference
[Page} 28 Disaster Preparedness Training
[Page] 30 Bush Foundation Change Network
[Page] 32 SDSU to Participate …

A Multi-Scale Analysis Of Jaguar (Panthera Onca) And Puma (Puma Concolor) Habitat Selection And Conservation In The Narrowest Section Of Panama., Kimberly A. Craighead

Antioch University Dissertations & Theses

Over the past two centuries, large terrestrial carnivores have suffered extreme population declines and range contractions resulting from the synergistic anthropogenic threats of land-use change and indirect effects of climate change. In Panama, rapid land use conversion coupled with climate change is predicted to negatively impact jaguar (Panthera onca) and puma (Puma concolor). This dissertation examined the environmental variables and scales influencing jaguar and puma habitat selection by season (annual, wet, and dry), using multi-scale optimized habitat suitability models and a machine-learning algorithm (Random Forests), in the narrowest section of Panama. The models derived from the data of an intensive …

Continued Eastward Range Expansion Of Black Phoebes (Sayornis Nigricans) In Southernmost Texas, Samuel G. Ortiz, Christopher A. Gabler, Timothy Brush

School of Earth, Environmental, & Marine Sciences Faculty Publications

ABSTRACT—We observed black phoebe (Sayornis nigricans) nests, breeding pairs, and juveniles in Cameron County, Texas, in 2017. Our first confirmed nesting records in Cameron County document a continued eastward range expansion by black phoebes.

RESUMEN—En el 2017, observamos nidos, parejas reproductoras y juveniles del pajaro mosquero negro (Sayornis nigricans) en el condado de Cameron, Texas. Los primeros registros confirmados de reproducci ´on en el condado de Cameron son evidencia de una continua expansion hacia el este de la distribuci ´on geogr´afica del mosquero negro.

An Acoustic Monitoring Method For Assessing River Dolphin Presence And Changes In The Context Of Anthropogenic Development, Charles A. Muirhead

Graduate Masters Theses

Populations of river dolphins throughout Asia are in decline as a direct result of intensified anthropogenic activity along river systems. Water development projects, land use change, contamination, and intensified fishing practices are known factors contributing to the probable extinction of the Yangtze river dolphin (Lipotes vexillifer) and declining populations of the South Asian river dolphin (Platanista gangetica spp.), Irrawady dolphin (Orcaella brevirostris), and finless porpoise (Neophocaena a. asiaeorientalis). Although not yet as extensive, river system development in South America is following a similar path as that of Asia, with impacts on dolphin species likely to follow. Currently, the Amazon river …

Using Physical Contact Heterogeneity And Frequency To Characterize Dynamics Of Human Exposure To Nonhuman Primate Bodily Fluids In Central Africa, Victor Narat, Mamdou Kampo, Thibut Heyer, Stephanie Rupp, Philippe Ambata, Richard Njouom, Tamara Giles-Vernick

Publications and Research

Emerging infectious diseases of zoonotic origin constitute a recurrent threat to global health. Nonhuman primates (NHPs) occupy an important place in zoonotic spillovers (pathogenic transmissions from animals to humans), serving as reservoirs or amplifiers of multiple neglected tropical diseases, including viral hemorrhagic fevers and arboviruses, parasites and bacteria, as well as retroviruses (simian foamy virus, PTLV) that are pathogenic in human beings. Hunting and butchering studies in Africa characterize at-risk human social groups, but overlook critical factors of contact heterogeneity and frequency, NHP species differences, and meat processing practices. In southeastern Cameroon, a region with a history of zoonotic emergence …

Simulating Detection-Censored Movement Records For Home Range Analysis Planning, Lyndsie S. Wszola, Victoria L. Simonsen, Lucía Corral, Christopher J. Chizinski, Joseph J. Fontaine

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Home range estimation is an important analytical method in applied spatial ecology, yet best practices for addressing the effects of spatial variation in detection probability on home range estimates remain elusive. We introduce the R package “DiagnoseHR,” simulation tools for assessing how variation in detection probability arising from landscape, animal behavior, and methodological processes affects home range inference. We demonstrate the utility of simulation methods for home range analysis planning by comparing bias arising from three home range estimation methods under multiple detection scenarios. We simulated correlated random walks in three landscapes that varied in detection probability and constructed home …

Bovine Mammary Gland Biopsy Techniques, Veridiana L. Daley, Charles Dye, Sophie H. Bogers, R. Michael Akers, Francisco C. Rodriguez, John P. Cant, John Doelman, Peter Yoder, Karan Kumar, Dane Webster, Mark D. Hanigan

Animal and Food Sciences Faculty Publications

Bovine mammary gland biopsies allow researchers to collect tissue samples to study cell biology including gene expression, histological analysis, signaling pathways, and protein translation. This article describes two techniques for biopsy of the bovine mammary gland (MG). Three healthy Holstein dairy cows were the subjects. Before biopsies, cows were milked and subsequently restrained in a cattle chute. An analgesic (flunixin meglumine, 1.1 to 2.2 mg/kg of body weight) was administered via jugular intravenous [IV] injection 15-20 min prior to biopsy. For standing sedation, xylazine hydrochloride (0.01-0.05 mg/kg of body weight) was injected via the coccygeal vessels 5-10 min before the …

Legacy Habitat Suitability Of Eastern Oysters (Crassostrea Virginica) In Louisiana: A Prelude To Mississippi River Delta Freshwater Diversions, Tasia Mv Denapolis

LSU New Orleans Theses and Dissertations

The Louisiana oyster industry is greatly impacted by freshwater and sediment diversions that are part of the effort to restore the state’s coastline. A habitat suitability index (HSI) proposes species-habitat relationships that can be instrumental in creating impact assessments and suitability predictions for management as new diversions are implemented. An oyster (Crassostrea virginica) HSI was developed using three variables crucial to oyster sustainability: average annual salinity, minimum monthly salinity, and average salinity during the spawning season. These Legacy HSI visualizations show annual fluctuations in the distribution of zones suitable for oyster cultivation prior to proposed diversions in Pontchartrain …

Scorpions Of The Horn Of Africa (Arachnida, Scorpiones). Part Xvii.Revision Of Neobuthus, With Description Of Seven New Species From Ethiopia, Kenya And Somaliland (Buthidae), František Kovařík, Graeme Lowe, Ahmed Ibrahim Awale, Hassan Sh Abdirahman Elmi, Ali Abdi Hurre

Euscorpius

New information about the taxonomy and distribution of the genus Neobuthus Hirst, 1911 is presented, based on material recently collected mainly from Somaliland, but also Djibouti and Kenya. Emended diagnoses are proposed for N. berberensis Hirst, 1911 and N. ferrugineus (Kraepelin, 1898) sensu stricto. New species described are: N. amoudensis sp. n. from Ethiopia and Somaliland; N. erigavoensis sp. n., N. factorio sp. n., N. gubanensis sp. n., N. maidensis sp. n., and N. montanus sp. n. from Somaliland; and N. kloppersi sp. n. from Kenya. This doubles the number of species in Neobuthus, unearthing a rich diversification …

Effects Of Urbanization On The Foraging Ecology And Microbiota Of The Generalist Seabird Larus Argentatus, Matthew Fuirst, Richard R. Veit, Megan Hahn, Nolwenn Dheilly, Lesley H. Thorne

Publications and Research

Larus gull species have proven adaptable to urbanization and due to their generalist feeding behaviors, they provide useful opportunities to study how urban environments impact foraging behavior and host-associated microbiota. We evaluated how urbanization influenced the foraging behavior and microbiome characteristics of breeding herring gulls (Larus argentatus) at three different colonies on the east coast of the United States. Study colonies represented high, medium and low degrees of urbanization, respectively. At all colonies, gulls frequently foraged at landfills and in other urban environments, but both the use of urban environments and gull foraging metrics differed with the degree of urbanization. …

Revision Of The Central Asian Scorpion Genus Anomalobuthus Kraepelin, 1900, With Descriptions Of Three New Species And A Generic Synonymy (Scorpiones: Buthidae), Rolando Teruel, František Kovařík, Victor Fet

Euscorpius

We revise the Central Asian endemic genus Anomalobuthus Kraepelin, 1900, which was considered monotypic for more than 100 years until the recent addition of a second species from Iran (Teruel et al., 2014). We redefine the generic diagnosis of Anomalobuthus and reveal that it is composed of no less than six species, three of which are described as new: A. krivochatskyi, sp. n. (central Uzbekistan and extreme southern Kazakhstan), A. lowei, sp. n. (southeastern Kazakhstan), and A. pavlovskyi, sp. n. (south-central Kazakhstan and extreme northern Turkmenistan). The monotypic genus Psammobuthus Birula, 1911 (described from the Ferghana Valley …

Microplastics In Full View: Birds As Bioindicators Of Malta's Coastal Ecosystem Health, Dalton Brauer

Masters Theses, 2010-2019

Plastic pollution has recently become a widely studied topic, yet research on microplastics has remained lacking for specific geographic regions. Microplastics are small plastics resulting from degradation or the dumping of raw material and can lead to deleterious impacts on the coastal marine environment and its organisms. To assess Malta’s coastal environmental health, water birds (inshore, offshore and pelagic species) were used as bioindicators by assessing the presence and abundance of plastic within their stomach contents. The project hoped to fill some of the current gaps in knowledge on microplastics within Malta by creating a working baseline, as well as …

Employing Natural History Collections In The Aid Of Conservation: Streamlining An Approach To Model Species Distributions En Masse For The Preservation Of Biodiversity, Alice Fornari

Master's Projects and Capstones

Using species distribution models (SDMs) in Natural History Collections (NHCs) can influence how humans implement conservation changes in flora and fauna communities and ecosystems. Through the use of legacy data (old NHCs and their associated locality/collection information), data correction (background data or pseudo absences added to presence-only data), and the SDM software, Maxent (and its associated geographic information systems or GIS projected models), it has been shown that it is feasible to create a low budget protocol/setup to project the past, present and future of species population changes. This has been done in the past few decades as more collections …

Gofish: A Versatile Nested Pcr Strategy For Environmental Dna Assays For Marine Vertebrates, Mark Y. Stoeckle, Mithun Das Mishu, Zachary Charlop-Powers

Publications and Research

Here we describe GoFish, a strategy for single-species environmental DNA (eDNA) presence/absence assays using nested PCR. The assays amplify a mitochondrial 12S rDNA segment with vertebrate metabarcoding primers, followed by nested PCR with M13-tailed, species-specific primers. Sanger sequencing confirms positives detected by gel electrophoresis. We first obtained 12S sequences from 77 fish specimens for 36 northwestern Atlantic taxa not well documented in GenBank. Using these and existing 12S records, we designed GoFish assays for 11 bony fish species common in the lower Hudson River estuary and tested seasonal abundance and habitat preference at two sites. Additional assays detected nine cartilaginous …

The Effects Of Sample Storage Conditions On The Microbial Community Composition In Hydraulic Fracturing Produced Water, Daniel Lipus, Amit Vikram, Richard Hammack, Kyle Bibby, Djuna Gulliver

Roman L. Hruska U.S. Meat Animal Research Center: Reports

The petroleum industry has an increasing interest in understanding the microbial communities driving biofouling and biocorrosion in reservoirs, wells, and infrastructure. However, sampling of the relevant produced fluids from subsurface environments for microbiological analyses is often challenged by high liquid pressures, workplace regulations, operator liability concerns, and remote sampling locations. These challenges result in infrequent sampling opportunities and the need to store and preserve the collected samples for several days or weeks. Maintaining a representative microbial community structure from produced fluid samples throughout storage and handling is essential for accurate results of downstream microbial analyses. Currently, no sample handling or …

Checklist Of Zooplanktons In Different Rivers Of Bajwat Area, Zahid Bhatti, Muhammad Asif Gondal, Asad Ghufran, Andleeb Batool

Journal of Bioresource Management

Zooplanktons are important fish and waterfowl food. Limnological studies of Marala Wetlands, a complex created by three rivers, i.e., Jammu Tawi, Chenab and Manawar Tawi, entering Bajwat area located 25 km from North of Sialkot city from state of Jammu and Kashmir, were carried out between October, 2000 to September 2001. This survey was carried out to create a checklist of zooplanktons existing in the study site which would help in future studies relating to aquatic biodiversity and ecological studies of wetlands. A minimum of 25 species of zooplanktons were present in the wetland area, which can be included into …

Status And Food Preferences Of Bears In Sub Alpine Scrub Forests, Ajk, Madeeha Manzoor, Safdar Ali Shah, Jibran Haider

Journal of Bioresource Management

Bears belong to the family Ursidae, under the order Carnivora with eight extant species (Grzimek, 2003). Roberts (1997) cite the presence of Himalayan brown bear, Himalayan black bear and Balochistan black bear in Pakistan. Dhirkot National Park (2008), Banjosa Nature Reserve (2009), Tolipir National Park (2008), Pir Chanasi National Park (2010) and Pir Lasura National Park (2009) were surveyed. A broad-spectrum investigation was conducted where the number of bears observed directly; pictures from surveillance cameras (Arc View GIS 3.3, 1992-2002) and at the same time indirect indicators such as bear scats, walking trails, paw prints and fur samples were noted …

Census Study Of Ducks, Swans And Geese From High-Altitude Wetlands Of Pakistan, Fakhra Nazir, Inayatullah Malik, Safdar Ali Shah

Journal of Bioresource Management

The family Anatidae consists of aquatic birds such as ducks, geese and swans of varied sizes that belong to the order Anseriformes (Carboneras, 1992). The Anatidae comprise of approximately 148 species (Johnsgard, 2010). This family is commonly found across the globe except for in Antarctica. Data on ecology and population of these water birds was taken from protected areas of Pir Lasura National Park (June-July 2009), Banjosa Game Reserve (May-June 2009), Dhirkot National Park (February 2008), Pir Chanasi National park (April-May 2010) and Tolipir National Park (April-May 2008). Only four species from the family Anatidae were found in the study …