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In Vitro Effect Of Recombinant Human Gonadotropins On Meiotic Competence Of Dog Oocytes, Kamber Demi̇r, Mi̇that Evecen, Ramazan Arici, Seli̇n Yağcioğlu, Nur Ersoy, Ni̇lhan Coşkun, Hatem Atalla, Kemal Ak, Sema Bi̇rler, Serhat Pabuccuoğlu Jan 2019

In Vitro Effect Of Recombinant Human Gonadotropins On Meiotic Competence Of Dog Oocytes, Kamber Demi̇r, Mi̇that Evecen, Ramazan Arici, Seli̇n Yağcioğlu, Nur Ersoy, Ni̇lhan Coşkun, Hatem Atalla, Kemal Ak, Sema Bi̇rler, Serhat Pabuccuoğlu

Turkish Journal of Veterinary & Animal Sciences

The reproductive biology of the domestic dog is unique among mammalian species; because of this, in vitro maturation (IVM) rate is still very low compared with other domestic animals in spite of attempts at improvement. The aim of this study was to consider the use of recombinant human gonadotropins as a replacement for pituitary gonadotropins for IVM of dog oocytes. A total of 845 cumulus-oocyte complexes were used in this study. To determine the effects of human recombinant gonadotropins, maturation medium was supplemented with two different concentrations (0.05 or 0.1 IU/mL) of pituitary (pFSH, pLH) and human recombinant (rhFSH and …

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Comparative Detection Of Bovine Herpesvirus-1 Using Antigen Elisa, Immunohistochemistry And Immunofluorescence Methods In Cattle With Pneumonia, Seli̇m Çomakli, Yavuz Seli̇m Sağlam, Mehmet Özkan Ti̇murkan Jan 2019

Comparative Detection Of Bovine Herpesvirus-1 Using Antigen Elisa, Immunohistochemistry And Immunofluorescence Methods In Cattle With Pneumonia, Seli̇m Çomakli, Yavuz Seli̇m Sağlam, Mehmet Özkan Ti̇murkan

Turkish Journal of Veterinary & Animal Sciences

This study was conducted to detect the prevalence and presence of bovine herpesvirus-1 (BoHV-1) using immunohistochemistry (IHC), immunofluorescence (IF) and antigen enzyme-linked immunosorbent assay (ELISA) in the lung samples of cattle (n = 1023). In addition, three methods were compared using receiver operating characteristic (ROC) and chi-square test ($χ^{2}$ test), and their usability were evaluated in laboratory conditions. Macroscopically, pneumonia was seen in 120 of the lung tissue samples (11.73%). Based on the microscopic examinations, the pneumonia types were classified as catarrhal-suppurative bronchopneumonia (6.7%), fibrinous bronchopneumonia (5%), interstitial pneumonia (84.1%), and granulomatous pneumonia (4.2%). The IHC, IF and antigen ELISA …

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Hematologic, Biochemical, Genetic, And Histological Biomarkers For The Evaluation Of The Toxic Effects Of Fipronil For Rhamdia Quelen, Ana Carolina Fredianelli, Victor Hugo Pierin, Samara Caroline Uhlig, Luciana Do Amaral Gurgel Galeb, Daniel Carlos Coatti Rocha, Deivid Roni Ribeiro, Amanda Anater, Claudia Turra Pimpão Jan 2019

Hematologic, Biochemical, Genetic, And Histological Biomarkers For The Evaluation Of The Toxic Effects Of Fipronil For Rhamdia Quelen, Ana Carolina Fredianelli, Victor Hugo Pierin, Samara Caroline Uhlig, Luciana Do Amaral Gurgel Galeb, Daniel Carlos Coatti Rocha, Deivid Roni Ribeiro, Amanda Anater, Claudia Turra Pimpão

Turkish Journal of Veterinary & Animal Sciences

This study aimed to determine the lethal concentration 50% (LC$_{50}$) and behavioral, hematological, biochemical, histopathological, and genetic disorders of fipronil for Rhamdia quelen in acute toxicity tests for 96 h. To determine the LC$_{50}$, 42 juveniles were distributed in groups of 0, 0.1, 0.2, 0.3, 0.4, 0.5, and 0.8 mg L$^{-1}$ of fipronil. For other evaluations 36 silver catfish were divided into control, 0.3 mg L$^{-1}$, and 0.4 mg L$^{-1}$ groups. Blood, kidneys, livers, and gills were collected for evaluation. The LC$_{50}$ calculated with probit-type regression was 0.811 mg L$^{-1}$ at 48 h of study. There was total mortality of …

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Microsatellite Panels For Parentage Testing Of Kilis Goats Reared In Turkey, Mahmut Keski̇n, Onur Yilmaz, Zühal Gündüz, Nezi̇h Ata, Sabri̇ Gül, İbrahi̇m Cemal, Orhan Karaca, Süleyman Ercüment Önel Jan 2019

Microsatellite Panels For Parentage Testing Of Kilis Goats Reared In Turkey, Mahmut Keski̇n, Onur Yilmaz, Zühal Gündüz, Nezi̇h Ata, Sabri̇ Gül, İbrahi̇m Cemal, Orhan Karaca, Süleyman Ercüment Önel

Turkish Journal of Veterinary & Animal Sciences

The aim of this study was to develop PCR-based suitable microsatellite marker panels for paternity testing and to define pedigree errors in Kilis goats. A total of 137 head of goats were used, consisting of 118 head of kids and 19 head of possible candidate sires. A total of 392 alleles were observed in 22 microsatellite markers. Allele numbers ranged between 12 (SRCRSP7) and 24 (BM1818, INRA0023, and SRCRSP15) with an average of 17.82. The mean value of the effective allele numbers was obtained as 9.44. The overall polymorphic information content value was quite high (0.88). The overall observed (Ho) …

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Phylogenetic Relationships Of Native Turkish Cattle Breeds Using Microsatellite Markers, Yusuf Özşensoy, Ercan Kurar, Müge Doğan, Zafer Bulut, Mehmet Ni̇zamlioğlu, Ayşe Işik, Aysun Çamlidağ, Vahdetti̇n Altunok Jan 2019

Phylogenetic Relationships Of Native Turkish Cattle Breeds Using Microsatellite Markers, Yusuf Özşensoy, Ercan Kurar, Müge Doğan, Zafer Bulut, Mehmet Ni̇zamlioğlu, Ayşe Işik, Aysun Çamlidağ, Vahdetti̇n Altunok

Turkish Journal of Veterinary & Animal Sciences

A total of 20 microsatellite DNA markers were used for genetic characterization and determination of phylogenetic relationships of native cattle breeds of Turkey, including the Anatolian Grey (AG), Anatolian Black (AB), South Anatolian Red (SAR), East Anatolian Red (EAR), Southern Anatolian Yellow (SAY), and Zavot (ZAV). DNA samples were isolated from 271 blood samples using an organic method. Amplified polymerase chain reaction products were separated by capillary electrophoresis and genotypes were determined for 20 microsatellites. A total of 269 different alleles were determined. The lowest (7.80) and highest (10.80) mean allele numbers were observed for the ZAV and SAY populations, …

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The Influence Of Haptoglobin Phenotype On Differential Leukocyte Count In Neonatal Calves, Elena Kalaeva, Olga Zemlyanukhina, Vladislav Kalaev, Kseniya Efimova, Anton Chernitskiy, Nikolay Kaverin, Vladimir Safonov Jan 2019

The Influence Of Haptoglobin Phenotype On Differential Leukocyte Count In Neonatal Calves, Elena Kalaeva, Olga Zemlyanukhina, Vladislav Kalaev, Kseniya Efimova, Anton Chernitskiy, Nikolay Kaverin, Vladimir Safonov

Turkish Journal of Veterinary & Animal Sciences

This research was conducted to study the content and phenotypes of haptoglobin and their correlation to the differential leukocyte count in healthy Red-motley Holstein calves (n = 30). The blood samples from calves were taken through puncture of the jugular vein on days 1, 7, 14, and 28 after birth. Differential leukocyte count was analyzed by manual enumeration. Serum haptoglobin content was determined by spectrophotometry (UV-1700 Shimadzu, Japan). Haptoglobin phenotypes were studied using gel electrophoresis. Serum haptoglobin content in calves on day 1 after birth was 3.8 ± 0.7 g/L, on day 7 was 3.5 ± 0.7 g/L, and on …

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Negative Effects Of Occurrence Of Clinical Mastitis From Calving To End Of The Voluntary Waiting Period On Reproduction In Holstein Cows, Seçki̇n Salar, Oğuz Çalişici, Duygu Çalişici, Doğukan Özen, Ayhan Baştan Jan 2019

Negative Effects Of Occurrence Of Clinical Mastitis From Calving To End Of The Voluntary Waiting Period On Reproduction In Holstein Cows, Seçki̇n Salar, Oğuz Çalişici, Duygu Çalişici, Doğukan Özen, Ayhan Baştan

Turkish Journal of Veterinary & Animal Sciences

The objective was to evaluate the effects of clinical mastitis (CM) on reproductive performance in high-milk?producing cows before the service period. The data of Holstein Friesian cows (n = 550) in a commercial farm was retrospectively evaluated. The diagnosis of CM was made by the presence of visible abnormalities in milk or symptoms of inflammation of one or more of the quarters. Cows were checked to detect CM prior to each milking. Calving to first service interval (CFSI), calving to conception interval (CCI), and services per conception (SC) were evaluated as reproductive parameters. Calving to first service interval (83.68 ± …

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Formation Of Local Protection Of The Respiratory Tract In Holstein Calves, Yuriy Alekhin, Maksim Zhukov, Valentina Morgunova, Galina Chusova, Irina Klementeva Jan 2019

Formation Of Local Protection Of The Respiratory Tract In Holstein Calves, Yuriy Alekhin, Maksim Zhukov, Valentina Morgunova, Galina Chusova, Irina Klementeva

Turkish Journal of Veterinary & Animal Sciences

The processes of formation of the local protection of the respiratory tract in nasal secretion samples of Holstein calves from birth to 6 months of age that were born from clinically healthy cows were examined. Only clinically healthy animals were involved in the experiment. Nasal secretion samples were collected with the help of a sterile foam tampon with a fixing thread in order to assess local immunity in animals at the age of 1, 5, 10, 30, 60, 90, 120, 150, and 180 days. Total protein, mucin, lysozyme activity, and alkaline phosphatase (ALP) were determined using commercially available methods. The …

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The Effect Of Laying Period On Egg Quality Traits And Chemical Composition Of Lindovskaya (Linda) Geese Reared Under Breeder Conditions, Mehmet Sari, Kadi̇r Emre Buğdayci, Aykut Asim Akbaş, Mustafa Saatci, Mustafa Numan Oğuz Jan 2019

The Effect Of Laying Period On Egg Quality Traits And Chemical Composition Of Lindovskaya (Linda) Geese Reared Under Breeder Conditions, Mehmet Sari, Kadi̇r Emre Buğdayci, Aykut Asim Akbaş, Mustafa Saatci, Mustafa Numan Oğuz

Turkish Journal of Veterinary & Animal Sciences

The study was conducted to determine the effect of laying period on egg quality traits as well as the chemical composition of Lindovskaya geese. The egg quality traits were examined by randomly taking a total of 90 eggs on the 45th ± 5, 60th ± 5, and 75th ± 5 days of the laying period from 3-year-old female Lindovskaya geese. It was determined that the effect of the laying period on external quality traits of eggs was statistically nonsignificant (P > 0.05). The effect of laying period on internal quality traits including height, diameter, and index of the yolk and albumen …

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Neutralizing Antibody Titers Against Field Strains Of Bovine Viral Diarrhea Virus After Vaccination With Three Commercial Vaccines, Gi̇zem Alpay, Kadi̇r Yeşi̇lbağ Jan 2019

Neutralizing Antibody Titers Against Field Strains Of Bovine Viral Diarrhea Virus After Vaccination With Three Commercial Vaccines, Gi̇zem Alpay, Kadi̇r Yeşi̇lbağ

Turkish Journal of Veterinary & Animal Sciences

Modified killed vaccines against bovine viral diarrhea virus (BVDV) are used worldwide. In the present study, the cross-neutralization antibody responses against field strains from seven subgenotypes of BVDV-1 and one subgenotype of BVDV-2 were evaluated using sera obtained by three inactivated commercial vaccines. One vaccine contained both BVDV-1 and BVDV-2 strains, while the others contained only BVDV-1a. Three vaccine groups, each containing five calves, were vaccinated two times with 30-day intervals. The antibody titers were evaluated by virus neutralization assay. The monovalent vaccine induced the highest antibody titers. Significant levels of neutralizing antibody titers were maintained up to the last …

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Histomorphological And Histochemical Structure Of The Midgut And Hindgut Of The Caucasian Honey Bee (Apis Mellifera Caucasia), Ahmet Ceylan, Sedat Sevi̇n, Özge Özgenç Jan 2019

Histomorphological And Histochemical Structure Of The Midgut And Hindgut Of The Caucasian Honey Bee (Apis Mellifera Caucasia), Ahmet Ceylan, Sedat Sevi̇n, Özge Özgenç

Turkish Journal of Veterinary & Animal Sciences

The Caucasian honey bee (Apis mellifera caucasia subspecies of Apis mellifera L.) is one of the most common and prominent honey bee breeds in Turkey. The morphometry of endemic honey bee breeds has been extensively studied, but little attention has been given to the microscopic morphology of these bees. The aim of the current study was to describe for the first time the histomorphology of the midgut and hindgut of the Caucasian honey bee in Turkey. A total of 20 local Caucasian adult honey bee workers were sampled for histomorphological and histochemical analysis. The midgut epithelium consisted of epithelial cells …

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Development Of Spermatogonial Stem Cell Niche And Immunoexpression Of Vimentin Filaments In The Testes Of Prenatal And Postnatal Indian Buffalo (Bubalus Bubalis), Ashritha Quanisha Carlo, Devendra Pathak, Opinder Singh, Neelam Bansal Jan 2019

Development Of Spermatogonial Stem Cell Niche And Immunoexpression Of Vimentin Filaments In The Testes Of Prenatal And Postnatal Indian Buffalo (Bubalus Bubalis), Ashritha Quanisha Carlo, Devendra Pathak, Opinder Singh, Neelam Bansal

Turkish Journal of Veterinary & Animal Sciences

In this study, we established the components of the buffalo spermatogonial stem cell (SSC) niche in prenatal (38.5-280 days of gestation), neonatal, prepubertal, and adult testes histochemically and immunohistochemically. Immunohistochemically, the changes in vimentin expression were evaluated. During prenatal life, the niche of primordial germ cells was formed by the surrounding mesenchymal cells and fibroblasts. The basement membrane (BM) was not organized at this stage. At 7.6 cm crown-rump length, testicular cords with a thin BM were seen. At the late gestational period, testicular cords with well-organized BM were seen. At the neonatal stage, the testicular cords were lined with …

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Phenotypic Characterization And Differentiation Of Mesenchymal Stem Cells Originating From Adipose Tissue, Ece Çerçi̇, Hati̇ce Erdost Jan 2019

Phenotypic Characterization And Differentiation Of Mesenchymal Stem Cells Originating From Adipose Tissue, Ece Çerçi̇, Hati̇ce Erdost

Turkish Journal of Veterinary & Animal Sciences

Stem cells are known as undifferentiated cells that are capable of divisions and self-renewal over an extended period. Adipose tissue-derived mesenchymal stem cells (ADSCs) are known to differentiate into many different organ and tissue cells. The purpose of this study was to characterize adipose tissue-derived mesenchymal stem cells in detail based on the expression status of certain surface markers and differentiation stages for clinical and laboratory applications. The migrating phase and mitotic property of the cells from adipose tissue were assessed under a microscope. Cell counting was performed during the first, second, and third passages. The cells were differentiated into …

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Natural History Of The Eastern Harvest Mouse In Southeastern Virginia, Robert K. Rose Jan 2019

Natural History Of The Eastern Harvest Mouse In Southeastern Virginia, Robert K. Rose

Biological Sciences Faculty Publications

The Eastern Harvest Mouse, Reithrodontomys humulis, has been studied extensively in southeastern Virginia since 1979, using a combination of live and pitfall trapping methods. This smallest rodent of eastern North America also is one of most versatile, occupying a range of habitats in southeastern Virginia from old fields in different stages of succession, brushy edges, and forests of different types. As with other species of Reithrodontomys, R. humulis often is associated with the Hispid Cotton Rat, Sigmodon hispidus, with both reaching modest densities in old fields. Two capture-mark-release studies of small mammal communities in southern Chesapeake lasting …

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Akt Expression And Lactose Synthesis During Heat Exposure In Saanen Goat, Nungnuch Saipin Jan 2019

Akt Expression And Lactose Synthesis During Heat Exposure In Saanen Goat, Nungnuch Saipin

Chulalongkorn University Theses and Dissertations (Chula ETD)

In tropical countries, high ambient temperature (HTa) is a fundamental factor that cause a decline in the mammary gland function in dairy animals. Dairy animals fed under HTa decreased milk yield (MY) as well as milk compositions. The current study focuses on the effect of HTa to decrease milk synthesis from natural and in vitro HTa condition. The first experiment was performed to investigate the effect of HTa from the natural condition in early lactating Saanen goat, 2-4 weeks of postpartum (2 PP-4 PP). Five animals were investigated during the winter season as control ambient condition. Six animals as the …

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Taxonomy Of Nocturnal Parasitic Wasps Family Braconidae (Hymenoptera: Ichneumonoidea) In Doi Phu Kha National Park, Thailand, Marisa Raweearamwong Jan 2019

Taxonomy Of Nocturnal Parasitic Wasps Family Braconidae (Hymenoptera: Ichneumonoidea) In Doi Phu Kha National Park, Thailand, Marisa Raweearamwong

Chulalongkorn University Theses and Dissertations (Chula ETD)

Parasitoid wasps of the family Braconidae are classified in the order Hymenoptera, same as bees, ants and other wasps. The Braconidae is one of the most species-rich families in the Insecta. Doi Phu Kha National Park (DPKNP) has highly diverse organisms, both flora and fauna reflecting the great varieties of habitat types, however, there is very little information on the taxonomy of Braconidae in this national park. Therefore, the aim of this research is to establish the taxonomy of nocturnal parasitic wasps in the family Braconidae within the DPKNP using light trapping technique. A total of 846 specimens, 177 morphospecies …

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พฤติกรรมการเรียนรู้และการตอบสนองต่อ 2,4-ไดไนโตรโทลูอีนในผึ้งพันธุ์ Apis Mellifera Linnaeus, 1758 และผึ้งโพรง Apis Cerana Fabricius, 1793, ศิรัช เลิศจินตนากิจ Jan 2019

พฤติกรรมการเรียนรู้และการตอบสนองต่อ 2,4-ไดไนโตรโทลูอีนในผึ้งพันธุ์ Apis Mellifera Linnaeus, 1758 และผึ้งโพรง Apis Cerana Fabricius, 1793, ศิรัช เลิศจินตนากิจ

Chulalongkorn University Theses and Dissertations (Chula ETD)

ผึ้งให้น้ำหวานเป็นสิ่งมีชีวิตต้นแบบสําหรับการศึกษาการตอบสนองต่อกลิ่นโดยใช้วิธีการเรียนรู้แบบมี เงื่อนไข (classical conditioning) ผ่านทางพฤติกรรมการแลบลิ้นหรือ Proboscis Extension Response (PER) ซึ่งมีรายงานอย่างกว้างขวางในผึ้งพันธุ์หรือผึ้งให้น้ำหวานสายพันธุ์ยุโรป (A. mellifera) ในขณะที่การศึกษาในผึ้งโพรงหรือผึ้งให้น้ำหวานสายพันธุ์เอเชีย (A. cerana) กลับยังมีการศึกษาอยู่น้อยมาก ทั้งที่มีความสําคัญในการเป็นแมลงผสมเกสรในภูมิภาคเอเชียและในประเทศไทย ในการศึกษาครั้งนี้ วิธีการ PER ถูกนํามาใช้เพื่อเป็นตัวประเมินความสามารถในการเรียนรู้และตอบสนองต่อสาร 2,4–ไดไนโตรโทลูอีน (DNT, สารตั้งต้นวัตถุระเบิด) โดยทําการเปรียบเทียบความสามารถของการเรียนรู้และตอบสนองระหว่างผึ้งทั้งสองชนิด การศึกษานี้ทดลองในช่วงระหว่างเดือนพฤษภาคม 2561 ถึงเดือนมีนาคม 2563 ผึ้งที่มีหน้าที่หาอาหารจะถูกจับและนําไปฝึกให้เกิดการเรียนรู้แบบมีเงื่อนไขระหว่างสารละลายน้ำตาลซูโครสความเข้มข้น 50% w/v (ใช้เป็นรางวัล) และ DNT ความเข้มข้น 25 มิลลิกรัมต่อลิตร (ใช้เป็นสิ่งเร้าเงื่อนไข) การฝึกให้ผึ้งเกิดการเรียนรู้แบบมีเงื่อนไขนั้นจะทําการฝึกผึ้งทั้งหมด 6 ครั้ง ในช่วงเวลา 13:00–15:00 น. เพื่อที่จะสามารถประเมินได้ว่าผึ้งมีความสามารถในการเรียนรู้และจดจํากลิ่น DNT ได้หรือไม่ ผลการศึกษาแสดงให้เห็นว่า ผึ้งพันธุ์ (N=61) สามารถเกิดการเรียนรู้แบบมีเงื่อนไขระหว่างกลิ่นและน้ำตาลซูโครสได้ โดยมีการแสดงพฤติกรรม PER เพิ่มขึ้นจาก 9.84±3.84% (การฝึกครั้งที่ 1) เป็น 47.54±6.44% (การฝึกครั้งที่ 6) ในขณะที่ผึ้งโพรง (N=36) สามารถเกิดการเรียนรู้แบบมีเงื่อนไขระหว่างกลิ่นและน้ำตาลซูโครสได้เช่นกัน เกิดการแสดงพฤติกรรม PER เพิ่มขึ้นจาก 2.78±2.78% (การฝึกครั้งที่ 1) เป็น 47.22±8.44% (การฝึกครั้งที่ 6) จากผลการศึกษายังระบุอีกว่า ผึ้งพันธุ์มีความสามารถในการเรียนรู้และตอบสนองต่อ DNT (49.18±6.45%) ได้ดีกว่าผึ้งโพรง (16.67±6.30%) ในช่วงที่สองของการฝึก (P<0.01) สําหรับการทดสอบความสามารถในการจดจํา (memory retention test) พบว่า ผึ้งพันธุ์ยังคงสามารถตอบสนองต่อ DNT และแสดงพฤติกรรม PER ได้ 46.00±3.68%, 67.34±4.83% และ 52.03±3.77% ในขณะที่ผึ้งโพรงก็สามารถแสดงพฤติกรรม PER ได้ 55.50±6.10%, 50.50±7.09% และ 44.50±6.37% หลังจากที่เวลาผ่านไป 10 นาที 24 ชั่วโมงและ 48 ชั่วโมงหลังการฝึกตามลําดับ อย่างไรก็ตามความสามารถในการจดจําต่อกลิ่น DNT ของผึ้งทั้งสองชนิดนี้ไม่ได้แตกต่างกันอย่างมีนัยสําคัญทางสถิติ (P>0.05) จากผลการศึกษานี้ ผู้วิจัยพบว่าผึ้งทั้งสองชนิดมีความจําระยะยาว (long-term memory) ที่ยังคงสามารถแสดงพฤติกรรม PER และตอบสนองต่อกลิ่น DNT ได้แม้ว่าเวลาจะผ่านไปแล้ว 48 ชั่วโมงก็ตาม ความสามารถในการเรียนรู้และจดจําที่แตกต่างกันระหว่างผึ้งให้หวานทั้งสองชนิดนี้อาจจะเป็นผลมาจากคัดเลือกทางธรรมชาติเนื่องจากผึ้งทั้งสองชนิดมีถิ่นที่อยู่อาศัยที่มีสภาพภูมิอากาศแตกต่างกัน การศึกษาเพิ่มเติมเพื่อประเมินความสามารถในการเรียนรู้และการจดจําของผึ้งให้น้ําหวานสายพันธุ์เอเชียชนิดอื่น ๆ จะช่วยให้ข้อมูลที่เป็นประโยชน์เพิ่มขึ้นในการศึกษาเชิงเปรียบเทียบระหว่างผึ้งที่อาศัยในเขตอบอุ่นกับในเขตร้อนชื้น

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A Comparative Study Of Equine Gut Microbiomes Using 16s And 18s Rrna Sequencing, Jillian Jorgenson Jan 2019

A Comparative Study Of Equine Gut Microbiomes Using 16s And 18s Rrna Sequencing, Jillian Jorgenson

Undergraduate Honors Thesis Projects

The gut microbiome of domestic horses (Equus ferus caballus) can be broken down into two primary divisions of interest: (1) prokaryotic composition, consisting of bacteria and archaea and (2) fungal composition. Within the gut, there are also eukaryotic parasite communities that may interact with the microbiome. While each has been the subject of various scientific explorations, in this study we analyze the potential interconnectedness of these categories. To determine the extent to which each component of the gut microbiome/parasitic communities influences the other, DNA was extracted and amplified from the fecal samples of eight horses. A combination of …

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Testing For Cryptic Diversity And Inference Of Population Structure In The Cosmopolitan Hoplonemertean Emplectonema Gracile (Nemertea), Paul L. Delaney Iv Jan 2019

Testing For Cryptic Diversity And Inference Of Population Structure In The Cosmopolitan Hoplonemertean Emplectonema Gracile (Nemertea), Paul L. Delaney Iv

Theses and Dissertations

Emplectonema gracile (Johnston 1837) is a hoplonemertean of marine intertidal hard-bottom communities and is distributed throughout the Northern Hemisphere. Although possessing a planktonic larval stage in its life history, the range of such cosmopolitan marine invertebrate species is often explained by cryptic speciation and anthropogenic transport. The purpose of this study is to test for possible cryptic species using mtDNA markers (COI and 16S rDNA) and to investigate population structure in E. gracile over a portion of its geographic range using mtDNA markers and ddRADseq nuclear SNP data. The results of both phylogenetic- and tree-based species delimitation revealed that E. …

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Analysis Of Unconventional Oil And Gas Impacts On Downstream Fish Assemblages And Physiological Stress, Joshua Noah Ankeny Jan 2019

Analysis Of Unconventional Oil And Gas Impacts On Downstream Fish Assemblages And Physiological Stress, Joshua Noah Ankeny

Graduate Theses, Dissertations, and Problem Reports (ETD)

Unconventional Oil and Gas (UOG) production has been steadily expanding throughout the mid-Atlantic since 2008. Increased sedimentation, degraded water chemistry and an overall decrease in habitat quality due to UOG is anticipated to negatively impact aquatic inhabitants, a common observation in other stressed landscapes (i.e., mining, agriculture, development). We assessed stream health through both community analysis and physiological parameters (i.e., growth and hematocrit). A before-after-control-impact study uncovered three fish metrics that were significantly different following UOG disturbances. The invertivore-piscivore metric decreased following UOG disturbance (p = 0.045) whereas two benthic metrics saw a surprising increase (p = 0.003 and p …

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Service Dogs For Veterans With Ptsd: Taxonomy, Work Stress Reduction, And Matching, Lindsay Parenti Jan 2019

Service Dogs For Veterans With Ptsd: Taxonomy, Work Stress Reduction, And Matching, Lindsay Parenti

Graduate Theses, Dissertations, and Problem Reports (ETD)

Research suggests that many veterans with post-traumatic stress disorder (PTSD) struggle with reintegration (Sayer et al., 2010), but are unlikely to seek help or complete treatment (Schottenbauer et al., 2008). To make matters worse, available treatment options are often time consuming, challenging, and/or associated with negative side effects (Carafano & Hutchinson, 2017). Using animals as a treatment modality for veterans with PTSD is an emerging topic of interest and has shown promise (Owen, et al., 2016; Richie et al., 2016). However, several factors have hindered the advancement of this field. Obstacles include a lack of standard terminology and classification system, …

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Demographic, Spatial, And Epigenetic Response Of The Louisiana Waterthrush (Parkesia Motacilla) To Shale Gas Development, Mack W. Frantz Jan 2019

Demographic, Spatial, And Epigenetic Response Of The Louisiana Waterthrush (Parkesia Motacilla) To Shale Gas Development, Mack W. Frantz

Graduate Theses, Dissertations, and Problem Reports (ETD)

My study centered on a bioindicator songbird, the Louisiana Waterthrush (Parkesia motacilla), hereafter waterthrush, an organism that co-occurs in both forested and aquatic habitat across the aquatic-terrestrial interface. This enabled the opportunity to quantify demographic, spatial, and epigenetic (i.e., DNA methylation) responses in a highly forested watershed of the Central Appalachians, the areas that have undergone the most rapid transformations over the last decade from unconventional shale gas development and activities. I organized my dissertation into 4 parts (Part 1: Introduction, Part 2: Louisiana Waterthrush Demography, Part 3: Spatial Assessment of Louisiana Waterthrush Foraging, Part 4: Louisiana Waterthrush …

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Tree Squirrels And Fishers In Northern California: The Effects Of Masting Hardwoods On Stand Use, Andria M. Townsend Jan 2019

Tree Squirrels And Fishers In Northern California: The Effects Of Masting Hardwoods On Stand Use, Andria M. Townsend

Cal Poly Humboldt theses and projects

In western North America, tree squirrels such as western gray (Sciurus griseus) and Douglas squirrels (Tamiasciurus douglasii) are potentially important prey for fishers (Pekania pennanti). Western gray squirrels in particular may be highly ranked due to their large body size. Masting trees including black oak (Quercus kelloggii) and tanoak (Notholithocarpus densiflorus) produce an important food source for tree squirrels; therefore, forest stands containing these trees may be useful to foraging fishers. I hypothesized that; 1) the abundance of western gray and Douglas squirrels in a stand is influenced by the …

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A Time- And State-Based Approach To Estimate Winter Movement And Survival Of Juvenile Coho Salmon (Oncorhynchus Kisutch) In Freshwater Creek, California, Nicholas Paul Van Vleet Jan 2019

A Time- And State-Based Approach To Estimate Winter Movement And Survival Of Juvenile Coho Salmon (Oncorhynchus Kisutch) In Freshwater Creek, California, Nicholas Paul Van Vleet

Cal Poly Humboldt theses and projects

Accounting for life history diversity and overwinter survival of juvenile Coho Salmon is important to inform restoration and recovery efforts for this threatened species. Multiple seaward migration patterns of Coho Salmon have been identified, including spring fry migrants, fall and winter parr migrants, and spring smolt migrants. Previous studies have indicated that spring smolt migrants have low overwinter survival rates while they are rearing in upstream habitats, suggesting that freshwater overwinter survival may be one factor that limits smolt production. However, previous research did not account for the early emigration of fall and winter parr migrants from the study area, …

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Contribution Of Juvenile Estuarine Residency In A Bar-Built Estuary To Recruitment Of Chinook Salmon (Oncorhynchus Tshawytscha), Emily Katherine Chen Jan 2019

Contribution Of Juvenile Estuarine Residency In A Bar-Built Estuary To Recruitment Of Chinook Salmon (Oncorhynchus Tshawytscha), Emily Katherine Chen

Cal Poly Humboldt theses and projects

Estuaries are commonly touted as nurseries for out-migrating salmonids, providing higher prey availability than streams, a physiological transition zone, and refugee from marine predators. Yet the diversity of estuaries makes it difficult to generalize the effect they have on salmonid recruitment. In bar-built estuaries, sandbars form at the mouth of rivers during periods of low flow, closing access to the ocean and disrupting outmigration. In this thesis, I evaluated how residency in a bar-built estuary affects the growth, survival, and ultimately recruitment of Chinook salmon (Oncorhynchus tshawytscha) in Redwood Creek, California. I conducted a mark-recapture experiment on out-migrating …

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Ground Ingredients: Analysis Of Lead Exposure In The California Condor’S (Gymnogyps Californianus) Ground Foraging Habitat, Evan Michael Mcwreath Jan 2019

Ground Ingredients: Analysis Of Lead Exposure In The California Condor’S (Gymnogyps Californianus) Ground Foraging Habitat, Evan Michael Mcwreath

Graduate Theses, Dissertations, and Problem Reports (ETD)

The California Condor (Gymnogyps californianus) is a critically endangered species that reached its nadir in 1987 with a population of 27 birds in the wild. Intensive management efforts have been implemented to aid the condors’ recovery, however, anthropogenic factors, like use of lead ammunition, continue to cause fatalities in this vulnerable population. Lead toxicosis, which is responsible for approximately 40% of all condor deaths since 1992, is one of the most significant threats to condors. In birds lead poisoning leads to neurological dysfunction, reproductive impairment, immune suppression, gastrointestinal disturbance, anemia, and ultimately increased vulnerability to predation, starvation, and infection. For …

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Lead Exposure Of North American Raptors, Vincent A. Slabe Jan 2019

Lead Exposure Of North American Raptors, Vincent A. Slabe

Graduate Theses, Dissertations, and Problem Reports (ETD)

Lead is an anthropogenic threat to terrestrial wildlife, has no physiological benefits, and is considered a neurotoxin. Legislation adopted in many developed countries restricts the uses of lead in consumer and industrial products such as pipe fittings, petrol, paint, and shot for use in waterfowl hunting. However, lead is currently categorized by the United States (US) government as a critical metal and common uses of lead still persist in North America. These include the use of rifle ammunition, shot in upland gamebird hunting, and fishing sinkers. Lead is also a by-product of multiple industrial operations including smelters, coal power plants, …

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Investigation Of Bovine Conceptus Galectins And The Effect Of Bovine Conceptus Secretory Proteins On The Endometrial Epithelial Transcriptome, Heather Lynn Baldwin Jan 2019

Investigation Of Bovine Conceptus Galectins And The Effect Of Bovine Conceptus Secretory Proteins On The Endometrial Epithelial Transcriptome, Heather Lynn Baldwin

Graduate Theses, Dissertations, and Problem Reports (ETD)

Pregnancy loss in cattle is greatest in the first 30 days of gestation. Near d15 of gestation, bovine conceptuses elongate and express LGALS1, an immunosuppressive glycan-binding protein believed to be essential for implantation. However, other members of the bovine galectin family, including LGALS3, LGALS4, LGALS7, LGALS8, LGALS9 and a galectin-13-like gene (LGALS13L), also may be expressed by the elongating conceptus. Therefore, galectin expression in elongating, d16 bovine conceptuses and intercaruncular endometrium as well as elongating, d14 ovine conceptuses and intercaruncular endometrium was assessed by RT-qPCR. Angus heifer and Texel ewes underwent estrous cycle synchronization and either inseminated or not bred. …

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Distribution And Habitat Use Of Benthic Fishes In The Lower Kanawha River, West Virginia, Nathaniel V. Owens Jan 2019

Distribution And Habitat Use Of Benthic Fishes In The Lower Kanawha River, West Virginia, Nathaniel V. Owens

Graduate Theses, Dissertations, and Problem Reports (ETD)

The Kanawha River in West Virginia is a historically diverse system in terms of ichthyofauna although, like many other large rivers, it has been subjected to a suite of anthropomorphic perturbations. These include this system being modified to allow the passage of commercial vessels for industry thus altering flow regimes, increased sedimentation, water depth, and channelization, and decreased interactions with its floodplain. Additionally, the fishes of this system have suffered from deleterious historical water quality issues caused by intensive timber operations, mining, and industrial waste. Post Clean Air Act, Clean Water Act, and Surface Mining Control and Reclamation Act water …

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Validation Of Reference Genes For Quantitative Expression Analysis By Qpcr In Various Tissues Of Date Mussel (Lithophaga Lithophaga), Urska Sivka Jan 2019

Validation Of Reference Genes For Quantitative Expression Analysis By Qpcr In Various Tissues Of Date Mussel (Lithophaga Lithophaga), Urska Sivka

Turkish Journal of Zoology

qPCR is a very popular method for identifying nucleotide sequences as a result of its sensitivity and relatively low cost and technical simplicity. Normalization is one of the most important steps in analyzing qPCR data and the use of reference genes is the most common normalization strategy. In the present study five commonly used reference genes (18S, 28S, ef1a, ß-act, and ?-tub) were evaluated for their stability in the mantle, gill, foot, and pallial gland of date mussel (L. lithophaga) in different seasons. Four different software packages were used for evaluation: geNorm, NormFinder, BestKeeper, and RefFinder. Although these programs contain …

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