Digital Commons Network^™

Validation Of The Irish National Sheep Genetic Evaluations, Niamh Barry

ORBioM (Open Research BioSciences Meeting)

Background: In Ireland, national sheep genetic evaluations have been implemented since 2009, however, to date no large scale study has been undertaken to investigate the accuracy of genetic evaluations in a large multi-breed population. The aim of this study was to validate the estimated breeding values (EBV) on a range of traits, using national data comprising 203,469 records across a range of phenotypic traits from 9,377 flocks.

Methods: The association between direct and maternal EBV on a range of lamb growth traits was quantified using a fixed effects model. For the lambing traits the association between direct and maternal EBV …

An Investigation Of The Novel Use Of Bacteriophages To Diagnose And Treat Johne's Disease In Cattle, Max Kevane-Campbell

ORBioM (Open Research BioSciences Meeting)

Johne’s disease is a scourge to dairy farmers all over the world. It is an infectious disease that causes chronic inflammation and lesions along the inside of the small intestine of, primarily, ruminant animals (i.e., cattle and sheep). It is an incurable disease and urgently requires new and radical intervention strategies. Apart from careful on-site farm management practices, little can be offered to farmers to reduce the risk of infection, and nothing short of livestock culling is effective once an animal becomes infected. Currently, there are no vaccines licensed in Ireland or antibiotic treatment strategies available for Johne’s disease. This …

Mining Of Producer Recorded Data; Using Beef Calf And Cow Live-Weight Data As A Case Study, Shauna Walsh

ORBioM (Open Research BioSciences Meeting)

Animal live-weight contributes to profitability in beef herds and is a key determinant of overall efficiency of the beef sector. The objective was to develop a novel editing criteria for anomaly detection of beef cow and calf live-weight data. Live-weight data from five sources (i.e., professionally-recorded, owned-scales, borrowed-scales, scales hired from a depot, other) were available from the Irish Cattle Breeding Federation.

A number of alternative methods were used for anomaly detection including: generation of within-herd regression estimates, partial correlations between cow and calf live-weight records and mahalanobis distance. Across each method a value was calculated for each herd based …

Two New Late Quaternary Avifaunas From The East-Central Great Basin With The Description Of A New Species Of Falco, Steven D. Emslie, Jim I. Mead

Western North American Naturalist

We report 2 new late Quaternary avifaunas from cave deposits in Snake Valley, White Pine County, eastern Nevada, that provide new records of extinct and extant species in the east-central Great Basin. These avifaunas collectively represent at least 24 species, including the most northern inland record of California Condor (Gymnogyps californianus) in western North America and a new species of kestrel (Falco sp.) described herein. Two extralimital living species also were identified—the Harlequin Duck (Histrionicus histrionicus) and Snowy Owl (Bubo scandiacus)—and are the first fossil records of these species in the Great Basin. …

Genes Involved In Feed Efficiency Identified In A Meta-Analysis Of Rumen Tissue From Two Populations Of Beef Steers, Amanda K. Lindholm-Perry, Allison M. Meyer, Rebecca J. Kern-Lunbery, Hannah C. Cunningham-Hollinger, Taran H. Funk, Brittney N. Keel

Roman L. Hruska U.S. Meat Animal Research Center: Reports

In cattle, the rumen is an important site for the absorption of feed by-products released by bacterial fermentation, and variation in ruminal function plays a role in cattle feed efficiency. Studies evaluating gene expression in the rumen tissue have been performed prior to this. However, validating the expression of genes identified in additional cattle populations has been challenging. The purpose of this study was to perform a meta-analysis of the ruminal transcriptome of two unrelated populations of animals to identify genes that are involved in feed efficiency across populations. RNAseq data from animals with high and low residual feed intake …

Genomic Tools Reveal Complex Social Organization Of An Invasive Large Mammal (Sus Scrofa), Chelsea L. Titus, Courtney F. Bowden, Timothy J. Smyser, Stephen L. Webb, James C. Beasley

United States Department of Agriculture Wildlife Services: Staff Publications

A comprehensive understanding of sociality in wildlife is vital to optimizing conservation and management efforts. However, sociality is complicated, especially for widely distributed species that exhibit substantive behavioral plasticity. Invasive wild pigs (Sus scrofa), often representing hybrids of European wild boar and domestic pigs, are among the most adaptable and widely distributed large mammals. The social structure of wild pigs is believed to be similar to European wild boar, consisting of matriarchal groups (sounders) and solitary males. However, wild pig social structure is understudied and largely limited to visual observations. Using a hierarchical approach, we incorporated genomic tools …

Maternal Responses In The Face Of Infection Risk, Patricia C. Lopes, Brenna M. G. Gormally, Aubrey Emmi, Delilah Schuerman, Chathuni Liyanage, Ursula K. Beattie, L. Michael Romero

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

When animals are sick, their physiology and behavior change in ways that can impact their offspring. Research is emerging showing that infection risk alone can also modify the physiology and behavior of healthy animals. If physiological responses to environments with high infection risk take place during reproduction, it is possible that they lead to maternal effects. Understanding whether and how high infection risk triggers maternal effects is important to elucidate how the impacts of infectious agents extend beyond infected individuals and how, in this way, they are even stronger evolutionary forces than already considered. Here, to evaluate the effects of …

A New Species Of Isometrus Ehrenberg, 1828 (Scorpiones: Buthidae) From Southeastern Plains Of Tamil Nadu, India, Shubhankar Deshpande, Gaurang Gowande, Deshabhushan Bastawade, Shauri Sulakhe

Euscorpius

We here describe a new species of Isometrus Ehrenberg, 1828 from the southeastern plains of Tamil Nadu, India, which is known only from its type locality, Chengalpattu. The new species was recovered as sister to Isometrus nakshatra based on a molecular phylogeny inferred from COI and 16S mitochondrial genes. Sequence divergence between the new species and all the Indian congeners was 12.6–15.7 % for COI and 12.2–14.4 % for 16S. The new species can also be differentiated from all the Indian congeners based on the following set of characters: surface of carapace with mixed (coarse and fine) and dense granulation; …

The Effects Of Floral Attributes And Conspecifics On Bumble Bee Forager Memory, Lucas Lauter, Tiffany Dinh

Undergraduate Research Symposium

What do bees remember about flowers? These memories are important for both bees and flowers. The bees have better foraging success and gain more nectar and pollen from flowers when they remember the most rewarding flower types. More memorable flowers will be visited more frequently, resulting in more successful pollination for the plant. At the same time, bees can also learn about flowers from other bees and may remember this information differently. We are training and testing three floral cues and a single social cue to see how the different types of cues affect their learning and memory of rewarding …

Fisheries Science Update - Australian Herring - June 2022, Department Of Primary Industries And Regional Development, Western Australia

Fisheries Science Updates

The latest weight of evidence stock assessment for Australian herring indicates that management arrangements introduced in 2015, combined with suitable environmental conditions, have led to the recovery of the resource.

The Department of Primary Industries and Regional Development (DPIRD) tracks our aquatic resources by undertaking weight of evidence stock assessments every three to five years.

DPIRD has undertaken four contemporary weight of evidence stock assessments of Australian herring since 2000.

The 2000 assessment (22 years ago) indicated the catch was sustainable. However, by 2013 the Australian herring stock status had become high risk and ‘unacceptable’, and new measures were introduced. …

Fisheries Management Paper No. 267: Prawn Resource Of Shark Bay Harvest Strategy 2022-2027 (Version 2.0), Department Of Primary Industries And Regional Development, Western Australia

Fisheries Management Papers

This Harvest Strategy has been developed in line with the Department’s Harvest Strategy Policy for Aquatic Resources (Department of Fisheries 2015) and is consistent with relevant national Harvest Strategy policies and guidelines (e.g. Sloan et al. 2014; Department of Agriculture and Water Resources 2018a, b). It makes explicit the performance indicators, reference levels, and harvest control rules designed to achieve the specific long- and short-term management objectives for the resource, and the broader goals of ESD and EBFM. This version of the Harvest Strategy also includes the Bycatch Action Plan (BAP) (refer to Appendix 1), formerly a standalone document.

The …

Fisheries Management Paper No. 276: Western Australian Silverlip Pearl Oyster (Pinctada Maxima) Resource Harvest Strategy 2022 - 2026, Version 2.0, Department Of Primary Industries And Regional Development, Western Australia

Fisheries Management Papers

Harvest strategies for aquatic resources in Western Australia (WA) are formal documents that support decision making processes which are consistent with the principles of Ecologically Sustainable Development (ESD; Fletcher 2002) and Ecosystem Based Fisheries Management (EBFM; Fletcher et al. 2012). The objectives of ESD are reflected in the Fish Resources Management Act 1994 (FRMA), Section 3, and the Aquatic Resources Management Act 2016 (ARMA), Section 9, which will replace the FRMA once enacted.

This Harvest Strategy aligns with DPIRD’s Harvest Strategy Policy for Aquatic Resources (Department of Fisheries 2015) and is consistent with national Harvest Strategy policies and guidelines (Sloan …

Subscription And Organization Information (June 2022)

Nebraska Bird Review

The Nebraska Bird Review is published quarterly by the Nebraska Ornithologists’ Union, Inc., as its official journal, and is sent to members not in arrears of dues. Annual subscription rates (on a calendar-year basis only): $25 in the United States and $35 in all other countries, payable in advance. Single copies are $7 each, postpaid, in the United States and $9 elsewhere. Send orders for back issues to Anita Breckbill, NOU Librarian, c/o Music Library, WMB 30, University of Nebraska, Lincoln, NE 68588-0101 (or at the email address listed below). Memberships in the NOU (on a calendar-year basis only): Active …

Remembering Lanny Randolph, William Flack

Nebraska Bird Review

Nebraska's birding community suffered a great loss on June 17, 2022, with the death of Lanny Randolph, an enthusiastic birder and a good friend to all of us. ... Lanny ... resolutely continued birding. In May 2022, he was able to attend the NOU meeting in Gering, and to see many of his longtime friends for the first time since the COVID pandemic. But a month later, on June 17, he was taken from us. Lanny's no longer physically present among us. But for those of us who knew him, he'll always be there in our memories, an invisible presence …

Spring Field Report, March-May 2022, W. Ross Silcock

Nebraska Bird Review

This spring there was a large number of interesting reports generated by active field observers, particularly in the west, where our knowledge continues to be broadened in all aspects. The main takeaway this spring was the inordinate plethora of species that matched or exceeded early arrival dates listed in BONO. There were no fewer than 70 species in this category, involving most families and genera, suggesting some overall influence on migration timing. Perhaps exceptions to these early arrivals were some lingering waterfowl and gulls although terns arrived early. Fully 50 of the early arrivers were passerines, notably including nine species …

Remembering Rosalind Morris

Nebraska Bird Review

Longtime NOU member Mary Rosalind Morris passed away in Lincoln on March 26, 2022, at the age of 101. ... Her membership in the NOU spanned decades, and she held the offices of vice president (1960), president (1975), librarian (1988-1989) and NBR editor (1992-1997). She was also a member of the Friends of Wilderness Park, Lincoln Naturalist Club, Wachiska Audubon, and the Nature Conservancy. For many years while on walks with her dog she picked up litter in Lincoln parks and on campus and received several environmental stewardship awards for her efforts. She is remembered by those who knew her …

Nou Spring Field Days And Annual Meeting, Gering, May 20-22, 2022, Janis Paseka

Nebraska Bird Review

The NOU Annual Meeting and Spring Field Days, organized by Kathy DeLara, Robin Harding, Jan Johnson, Alice Kenitz and Ruthie Stearns, was held in Gering on May 20-22, 2022, with 64 in attendance. This was the first time the organization had been able to get together since the meeting in Imperial in September of 2019. Our spring and fall meetings in 2020 and 2021 were cancelled due to the COVID-19 pandemic. Our meetings and meals took place in the Gering Civic Center. The weekend weather varied from cool and sunny to windy, snowy, or rainy, but the total species list …

Rare Dark American Kestrel – Melanistic Or Sooty?, Joseph A. Gubanyi, Joel Rathe, Camden Sesna

Nebraska Bird Review

On April 13 in Seward County, we noticed a dark bird flying relatively low over fields east of Seward near 224th and Bluff Rd. Initially, because of its size, dark coloration and pointed wingtips, we were unsure of its identification and followed the bird to get better looks and identify it. We were able to observe and photograph the bird perched (Figure 1). We also observed the bird hovering and diving to the ground multiple times in search of prey. After better looks, based on size, wing shape, hooked beak, claws, and behavior (repeated hovering over field), we concluded the …

The Nebraska Bird Review Volume 90 Number 2, June 2022

Nebraska Bird Review

Spring Field Report, March - May 2022, by W. Ross Silcock ….46

Rare Dark American Kestrel – Melanistic or Sooty?, by Joseph Gubanyi, Joel Rathe, Camden Sesna …. 71

Remembering Rosalind Morris …. 76

Remembering Lanny Randolph by William Flack … 77

NOU Spring field Days and Annual Meeting in Gering, May 20-22, 2022 ….78

Subscription and Organization Information …. 87

Blue Resilience: Is There A Need For An Alaskan Coastal Career Development Framework?, Jared Fuller

All Theses And Dissertations

Youth career outmigration has increased in Alaska’s coastal communities in the last few decades. The ocean and ocean-adjacent industries that comprise the blue economy make up the majority of the employment options in places have experienced declines within these regions which has been attributed to the outward movement of young people. The dynamic history of Alaska has had specific impacts with regards to Alaskan coastal communities, their ocean-resource economies, and thus, the potential for young people to find career paths within them. Potential economic-resource vulnerabilities could be mapped along with the complex systems to help build resilience within those communities. …

The Effect Of Reduced Cp, Synthetic Amino Acid Supplemented Diets On Growth Performance And Nutrient Excretion In Wean To Finish Swine, Caitlin E. Vonderohe, Kayla M. Mills, Shule Liu, Matthew D. Asmus, Emily R. Otto-Tice, Brian T. Richert, Ji-Qin Ni, John Scott Radcliffe

Animal and Food Sciences Faculty Publications

Mixed sex pigs (n = 720) were placed in 12 rooms (Purdue Swine Environmental Research Building) to measure the effect of reduced crude protein (CP), amino acid (AA)-supplemented diets on growth and the carcass. Pigs were blocked by body weight (BW) and gender and allotted to room and pen (10 mixed-sex pigs/pen). Pigs were fed a nine-phase, wean-finish program. Control pigs consumed corn-soybean meal-distiller’s dried grains with solubles (DDGS) diets containing no to minimal (Met) synthetic AA. The 2X diet was formulated to meet the seventh most-limiting AA, and balanced using synthetic AAs to meet all AA needs. The 1X …

Valuing Angling On Reservoirs Using Benefit Transfer, Richard T. Melstrom, Mark A. Kaemingk, Nicholas W. Cole, John C. Whitehead, Christopher J. Chizinski, Kevin L. Pope

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Economic assessments are rarely applied to inland recreational fisheries for management purposes, especially when compared to fish, habitat, and creel assessments, yet economic assessments can provide critical information for management decisions. We provide a brief overview of economic value, key terminology, and existing economic techniques to address these issues. Benefit transfer, a technique used to measure economic value when an original analysis is not practicable, is conducted by drawing on existing estimates of economic value in similar contexts. We describe an application of benefit transfer to measure the economic value of several recreational fisheries in Nebraska, USA. We examine two …

Asas–Nanp Symposium: Mathematical Modeling In Animal Nutrition: Opportunities And Challenges Of Confned And Extensive Precision Livestock Production, Hector M. Menendez Iii, Jameson R. Brennan, Charlotte Gaillard, Krista Ehlert, Jaelyn Quintana, Suresh Neethirajan, Aline Remus, Marc Jacobs, Izabelle A.M.A. Teixerira, Benjamin L. Turner, Luis O. Tedeschi

Natural Resource Management Faculty Publications

Modern animal scientists, industry, and managers have never faced a more complex world. Precision livestock technologies have altered management in confned operations to meet production, environmental, and consumer goals. Applications of precision technologies have been limited in extensive systems such as rangelands due to lack of infrastructure, electrical power, communication, and durability. However, advancements in technology have helped to overcome many of these challenges. Investment in precision technologies is growing within the livestock sector, requiring the need to assess opportunities and challenges associated with implementation to enhance livestock production systems. In this review, precision livestock farming and digital livestock farming …

A Review Of Animal Welfare And Current Enrichment Methods For Captive Marine Mammals, Ashleigh I. Richardson

University Honors Theses

Animal care and conservation facilities such as zoos, aquaria, and marine mammal parks often utilize a variety of enrichments to deter stereotypic behaviors and improve overall animal welfare. Facilities that go through the intense accreditation process of one or more accreditation organizations must uphold the animal care standards and education requirements that these organizations call for. These care standards typically include regulations regarding animal training and enrichment, though the extent to which these regulations go into detail often vary from species to species and between organizations. The goal of this review was to assess the current standard of animal enrichment …

A Review Of Current Sea Cucumber And Apostichopus Californicus Knowledge And A Proposal For Future Research And Fishery Management, Lily Haug

University Honors Theses

The sea cucumber species Apostichopus californicus is fished in the Pacific Northwest region of North America and has the potential to be an economically beneficial fisheries species. An understanding of their population levels must be present to sustainably regulate their harvest. Current fisheries in North America vary in their methodology and level of regulation. The current regulations are presented and their strengths and shortfalls are described. This review gathers research done on tropical sea cucumber species and presents that knowledge alongside that regarding Apostichopus californicus to suggest future research and fishery management strategies. A. californicus takes four years to sexually …

Duodenal Metabolic Profile Changes In Heat-Stressed Broilers, Jalila S. Dridi, Elizabeth Greene, Craig W. Maynard, Giorgio Brugaletta, Alison Ramser, Courtney J. Christopher, Shawn R. Campagna, Hector F. Castro, Sami Dridi

Poultry Science Faculty Publications and Presentations

Heat stress (HS) is devastating to poultry production sustainability worldwide. In addition to its adverse effects on growth, welfare, meat quality, and mortality, HS alters the gut integrity, leading to dysbiosis and leaky gut syndrome; however, the underlying mechanisms are not fully defined. Here, we used a high-throughput mass spectrometric metabolomics approach to probe the metabolite profile in the duodenum of modern broilers exposed to acute (AHS, 2 h) or chronic cyclic (CHS, 8 h/day for 2 weeks) HS in comparison with thermoneutral (TN) and pair-fed birds. Ultra high performance liquid chromatography coupled with high resolution mass spectrometry (UHPLC–HRMS) identified …

Feed Composition And Isolate Of Histomonas Meleagridis Alter Horizontal Transmission Of Histomonosis In Turkeys. Proof Of Concept, Thaina L. Barros, Christine N. Vuong, Juan D. Latorre, Roberto S. Cuesta, Elizabeth Mcgill, Samuel J. Rochell, Guillermo Tellez-Isaias, Billy Hargis

Poultry Science Faculty Publications and Presentations

Outbreaks of histomonosis in turkeys are typically initiated by the ingestion of contaminated embryonated eggs of Heterakis gallinarum, potentially present in earthworms and mechanical vectors. Once an outbreak is started, infected turkeys can transmit the disease by horizontal transmission. Factors influencing horizontal transmission of histomonosis are poorly understood. Replication of horizontal transmission in experimental conditions has not been consistent, presenting an obstacle in searching for alternatives to prevent or treat the disease. Two pilot experiments and three validation experiments were conducted in the present study. In pilot experiment 1, one isolate of Histomonas meleagridis (named Buford) was used. Turkeys …

Vaccines Using Clostridium Perfringens Sporulation Proteins Reduce Necrotic Enteritis In Chickens, Ying Fu, Mohit Bansal, Tahrir Jatli Alenezi, Ayidh Almansour, Hong Wang, Xiaolun Sun

Poultry Science Faculty Publications and Presentations

Clostridium perfringens is the prevalent enteric pathogen in humans and animals including chickens, and it remains largely elusive on the mechanism of C. perfringens-induced enteritis because of limited animal models available. In this study, we investigated the role of C. perfringens sporulation proteins as vaccine candidates in chickens to reduce necrotic enteritis (NE). C. perfringens soluble proteins of vegetative cells (CP-super1 and CP-super2) and spores (CP-spor-super1 and CP-spor-super2) were prepared, and cell and chicken experiments were conducted. We found that deoxycholic acid reduced C. perfringens invasion and sporulation using the Eimeria maxima and C. perfringens co-infection necrotic enteritis (NE) …

Orthochirus Kovariki Sp. N. From Takhar Province, Afghanistan (Scorpiones: Buthidae), Ersen A. Yağmur, Faizurrahman Khalili

Euscorpius

A new species, Orthochirus kovariki sp. n. is described and illustrated based on both sexes from Takhar Province of Afghanistan. O. kovariki sp. n. appears to be close to O. feti Kovařík, 2004, reported from Uzbekistan and Tajikistan; both species have the movable finger of pedipalp without outer denticles. Detailed illustrations of O. kovariki sp. n. are given.

The Reproductive Biology Of Small Fishes And The Clutch Concept: Combining Macroscopic And Histological Approaches, David C. Heins, Nancy J. Brown-Peterson

Faculty Publications

Accurate estimates of reproductive parameters important in understanding life history evolution and conservation of small fishes are dependent upon careful assignment of ovarian phases. Proper assignment is based upon the stages of propagule (oocyte) development, oocyte maturation and the location of any clutch or portion thereof within the ovaries. Macroscopic inspection and assignment of ovarian developmental phases have often been used for small freshwater fishes. By contrast, histological methods for assignment of reproductive phases have been developed and are widely used for marine fishes, but they have rarely been used for small freshwater fishes. We review oocyte development, ovum maturation, …