Digital Commons Network^™

Factors Affecting Forage Quality And The Subsequent Response In Production And Energy Metabolism In Lactating Jersey Cows, Kassidy Kate Buse

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

Forage quality is the potential of a forage to produce a production response in animals. Because of how essential they are in dairy cattle rations, forages can have major influence on the behavior and production of dairy cattle. In experiment 1, the effect of forage fragility on the rumen environment and digestibility was evaluated. Increasing the inclusion of a less fragile forage led to greater rumen retention time, which resulted in lower rumen pH and greater NDF digestibility. Experiment 2 evaluated the effects of diets high in either corn silage or alfalfa haylage supplemented with either corn- or soy-based protein …

A Novel Machine-Learning Framework Based On A Hierarchy Of Dispute Models For The Identification Of Fish Species Using Multi-Mode Spectroscopy, Mitchell Sueker, Amirreza Daghighi, Alireza Akhbardeh, Nicholas Mackinnon, Gregory Bearman, Insuck Baek, Chansong Hwang, Jianwei Qin, Amanda M. Tabb, Jiahleen Roungchun, Rosalee S. Hellberg, Fartash Vasefi, Moon Kim, Kouhyar Tavakolian, Hossein Kashini Zadeh

Food Science Faculty Articles and Research

Seafood mislabeling rates of approximately 20% have been reported globally. Traditional methods for fish species identification, such as DNA analysis and polymerase chain reaction (PCR), are expensive and time-consuming, and require skilled technicians and specialized equipment. The combination of spectroscopy and machine learning presents a promising approach to overcome these challenges. In our study, we took a comprehensive approach by considering a total of 43 different fish species and employing three modes of spectroscopy: fluorescence (Fluor), and reflectance in the visible near-infrared (VNIR) and short-wave near-infrared (SWIR). To achieve higher accuracies, we developed a novel machine-learning framework, where groups of …

Raccoon Spatial Ecology In The Rural Southeastern United States, Jacob E. Hill, Madison L. Miller, James L. Helton, Richard B. Chipman, Amy Gilbert, University Of Georgia, Guha Dharmarajan, Olin E. Rhodes Jr.

United States Department of Agriculture Wildlife Services: Staff Publications

The movement ecology of raccoons varies widely across habitats with important implications for the management of zoonotic diseases such as rabies. However, the spatial ecology of raccoons remains poorly understood in many regions of the United States, particularly in the southeast. To better understand the spatial ecology of raccoons in the southeastern United States, we investigated the role of sex, season, and habitat on monthly raccoon home range and core area sizes in three common rural habitats (bottomland hardwood, upland pine, and riparian forest) in South Carolina, USA. From 2018–2022, we obtained 264 monthly home ranges from 46 raccoons. Mean …

Raccoon Spatial Ecology In The Rural Southeastern United States, Jacob E. Hill, Madison L. Miller, James L. Helton, Richard B. Chipman, Amy T. Gilbert, James C. Beasley, Guha Dharmarajan, Olin E. Rhodes Jr.

United States Department of Agriculture Wildlife Services: Staff Publications

The movement ecology of raccoons varies widely across habitats with important implications for the management of zoonotic diseases such as rabies. However, the spatial ecology of raccoons remains poorly understood in many regions of the United States, particularly in the southeast. To better understand the spatial ecology of raccoons in the southeastern US, we investigated the role of sex, season, and habitat on monthly raccoon home range and core area sizes in three common rural habitats (bottomland hardwood, upland pine, and riparian forest) in South Carolina, USA. From 2018–2022, we obtained 264 monthly home ranges from 46 raccoons. Mean monthly …

Oregon State Rank Assessment For Puget Oregonian (Cryptomastix Devia), Eleanor P. Gaines, Misty Nelson

Institute for Natural Resources Publications

Oregon state conservation status assessment for Puget oregonian (Cryptomastix devia) using NatureServe methodology, 2023.

Oregon State Rank Assessment For Chace Sideband (Monadenia Chaceana), Misty Nelson

Institute for Natural Resources Publications

Oregon state conservation status assessment for chace sideband (Monadenia chaceana) using NatureServe methodology, 2023.

Effect Of Ploidy On Salinity And Temperature Tolerance In Early Life Stages Of The Eastern Oyster (Crassostrea Virginica), Christian Boudreaux, Jessica Pruett, Alexz Carpenter, Kristie Willett, Deborah Gochfeld

Honors Theses

The U.S. Gulf of Mexico contains the largest remaining wild oyster fishery in the world, but populations have declined in recent decades. A growing interest in off-bottom aquaculture that relies on triploid eastern oysters (Crassostrea virginica) has emerged in the Gulf region, yet these faster growing oysters suffer high mortality as adults during low salinity events (< 5 ppt) in warmer summer months. The combined effects of salinity and temperature stressors on early life stages of triploid oysters are unknown. Early life stages are particularly crucial to understand because triploid oysters do not occur naturally and must be reared in hatchery settings, requiring appropriate water conditions to yield the greatest survival and growth. Thus, we tested the effects of different temperatures (28oC and 32oC) and salinities (5, 10, and 15 ppt) on diploid and triploid oysters at three critical production stages: veliger, pediveliger, and spat. Veliger survival was significantly lower for triploids relative to diploid oysters at all experimental conditions, but triploid veligers had faster growth than diploids at 32oC and 15 ppt. Pediveliger settlement was not affected by ploidy type and only reduced at high temperature (32oC) and the lowest salinity (5 ppt). Diploid spat showed highest survival at 28oC and 15 ppt, while triploids survived best at 32oC and 15 ppt. Triploid spat attained greater shell height compared to diploids in our 6-day exposures, but growth decreased for both ploidies at lower salinities. At the salinity and temperature levels examined, diploid early life stages performed best at 28oC and 15 ppt, whereas triploids were more successful at 32oC and 15 ppt. A broader understanding of the combined effects of environmental stressors will improve the success of hatchery production yields and the resulting economic and environmental benefits of the oyster industry.

Examination Of The Prevalence And Behaviors Of Pathogenic And Spoilage Bacteria At Multiple Stages In The Meat Processing Chain, Samuel C. Watson

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

As long as there is food, there will also be bacteria that are capable of compromising the quality and safety of food. This dissertation aims to study bacteria capable of spoiling meat, causing illness, or both. The literature review summarizes the understanding of several bacterial pathogens, current issues in combating those pathogens in the food supply, and how spoilage Pseudomonas behave in the meat supply. Chapter 2 explored the impact of organic acid treatments on the spoilage microbiome of raw beef during extended storage. While Pseudomonas and Yersinia were both present in significant levels, Lactococcus was determined to be the …

Population Genetic Structure Of Testudo Hermanni Boettgeri (Hermann's Tortoise) In Türkiye, Can Yilmaz, Oğuz Türkozan, Sezgi̇n Karaman, Celal Ülger

Turkish Journal of Zoology

Multidisciplinary approaches for the conservation of endangered species have great importance in preparing management plans. In addition to ecological and population demographic parameters, genetic data provide vital information for conservation management plans for a species. The Hermann's tortoise (Testudo hermanni) suffers from illegal trade, fires, habitat fragmentation and destruction, and therefore, the genetic diversity of the regional populations has been affected. It was aimed herein to impart knowledge on the population genetic structure of T. hermanni boettgeri, listed as near threatened by the International Union for Conservation of Nature Red List as a subspecies and has limited …

Life Table Of Pseudaulacaspis Pentagona Targioni-Tozzetti (Hemiptera: Diaspididae) At Different Temperatures On White And Black Mulberries, Özden Dokuyucu, Selma Ülgentürk, Mehmet Sali̇h Özgökçe

Turkish Journal of Zoology

Some biological characteristics and life table of Mulberry scale [Pseudaulacaspis pentagona Targioni-Tozzetti (Hemiptera: Diaspididae)], which is an important thermophilic, invasive, and polyphagous pest of fruit trees, was investigated. The research has been conducted at 7 different temperatures (20.6, 23.2, 27.1, 29.0, 30.6, 31.3, 33.8 °C) on two different mulberry species (Morus alba and M. nigra) in the climate chambers with fixed illumination regime (16 : 8 h) and relative humidity (60% ± 5%) conditions. The total longevity of female individuals on M. alba were 120.54, 86.79, 63.54, 57.51, 41.35, and 26.27 days, while 110.61, 99.62, 63.84, 70.92, …

Comparison Of The Movement Speed Of Three Ant (Hymenoptera: Formicidae) Species Along Trails, Stanislav Stukalyuk, Mykola Kozyr, Ascar Akhmedov

Turkish Journal of Zoology

The aim of this study was to compare the speed of movement of 3 species of ants (Formica rufa, F. polyctena, and Lasius fuliginosus) along trails with different types of substrates. The study took place from June to August 2022 within the Holosiyivo Forest, located in Kyiv, Ukraine. For L. fuliginosus, the study was conducted in August and September 2022. For the experiment, 3 colonies of each species were selected in June, with only 3 trails passing on substrate (a total of 9 trails). One of the trails was left unchanged (ground surface), smooth logs were …

Exploring The Efficacy Of Rnai-Mediated Gene Knock-Down Via Oral Delivery Of Dsrna In The Colorado Potato Beetle (Leptinotarsa Decemlineata Say), Haneef Tari̇q, Ayhan Gökçe, Emre Aksoy, Emi̇nur Elçi̇, Allah Bakhsh

Turkish Journal of Zoology

RNA interference (RNAi) is a versatile genetic tool capable of selectively inhibiting the expression of any gene in a targeted organism. Its implementation holds great promise for safeguarding crops against insect pests and diseases. Vacuolar-ATPase represents an ideal target for RNAi-based pest management strategies since it is an enzyme essential for various physiological processes in insects. In this study, double-stranded RNA (dsRNA) was synthesized using an L4440 vector in Escherichia coli HT115 strain to silence the Vacuolar-ATPase proteolipid subunit mRNA in the Colorado potato beetle (Leptinotarsa decemlineata Say). To assess the effectiveness of RNAi, L. decemlineata larvae at different …

Health Risk Assessments Of Heavy Metal Concentrations Via Consumption Of An Invasive Species, Carassius Gibelio, From Two Large Freshwater Lakes Of Türkiye, Duygu Ceren Çağlan Kaya

Turkish Journal of Zoology

Heavy metal toxicity is a significant threat to human health and the environment. Contamination of the food chain with heavy metals in water sources may impact the health of consumers adversely. This study aimed to determine the concentrations of Pb, Cd, Cr, Cu, and Zn in the invasive fish species Carassius gibelio inhabiting two important lakes in Türkiye: Lake Beyşehir and Lake Eğirdir, from the Lake District Region and assess any health risks posed by the consumption of these species. For this purpose, C. gibelio species were obtained from two lakes in dry and rainy seasons and heavy metal concentrations …

Structural And Biological Characterization Of Two Freshwater Mussel Shells (Bivalvia: Unionidae), Hülya Şerefli̇şan

Turkish Journal of Zoology

The shell of a freshwater mussel (Mollusca: Bivalvia) is a composite biological material that plays an active role in maintaining ecosystem services. Mussel shells have variable structures both within and between species. In this study, the structural and biological characteristics of the shells of Potomida semirugata and Leguminaia wheatleyi were investigated in order to use freshwater mussel shells as a biological material. Close observation of the microstructure of the shells of the two common freshwater bivalves revealed a variation in construction from the outer periostracum to the inner nacreous layer. In P. semirugata, a polygonal arrangement with columnar prisms …

Freshwater Lampreys And Fishes Of Türkiye; An Annotated Checklist, 2023, Erdoğan Çi̇çek, Sevi̇l Sungur, Ronald Fricke, Burak Seçer

Turkish Journal of Zoology

Herewith, the current status of the inland waters ichthyofauna of Türkiye is revised, and an updated checklist of the freshwater lampreys and fishes is presented. As of November 2023, the freshwater ichthyofauna of Türkiye is known to consist of 427 species belonging to 20 orders, 37 families, and 97 genera. Among these, 21 species (4.9%) are alien, and 215 species (50.4%) are considered endemic to Türkiye. The orders with the largest numbers of species in the ichthyofauna of Türkiye are the Cypriniformes (297 species, 69.6%), followed by the Cyprinodontiformes (26 species, 6.1%), the Salmoniformes (25 species, 5.9%), the Gobiiformes (20 …

Atlantic Cutlassfish (Trichiurus Lepturus), Gabriela R. Ridings Ms., David Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

No abstract provided.

Baa-Ttling Sore Mouth In Sheep With Mathematical Modeling, David C. Elzinga, W. Christopher Strickland

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

A Mathematical Model Of Acanthocephalan Parasite Infection In Gull-Billed Terns, Charlotte Moser

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Oregon State Rank Assessment For Klamath Lamprey (Lampetra Similis), Misty Nelson

Institute for Natural Resources Publications

Oregon state conservation status assessment for Klamath Lamprey (Lampetra similis) using NatureServe methodology, 2023.

Integrated Periphyton Biofilters In Marine Recirculating Aquaculture Systems, Adam N. Bell

USF Tampa Graduate Theses and Dissertations

Marine aquaculture is a growing industry that has the potential to reduce eutrophication, overfishing, and loss of biodiversity. Recirculating aquaculture systems (RAS) are a type of aquaculture system that decreases discharge, raises biological control, and conserves water; however, RAS are challenged due to high energy cost, low biodiversity, water quality control, and waste nutrients. Periphyton biofilters are a new technology that allows for feed production, water quality control, microbial diversity, and resource recovery in marine aquaculture systems. The overarching question that this dissertation investigates is, how can periphyton biofilters be integrated into RAS to address the challenges of modern sustainable …

Oregon State Rank Assessment For Umpqua Dace (Rhinichthys Evermanni), Misty Nelson

Institute for Natural Resources Publications

Oregon state conservation status assessment for Umatilla dace (Rhinichthys evermanni) using NatureServe methodology, 2023.

Characterisation Of Sex Chromosome Aneuploidy In Female Cattle Using Genotype Information, Cliona Ryan

ORBioM (Open Research BioSciences Meeting)

Background

Aneuploidy is a genetic condition characterized by the loss (monosomy) or gain (trisomy) of one or more chromosomes. Aneuploidy affecting the sex chromosomes often leads to infertility. The objective of this study was to estimate the prevalence of sex chromosome aneuploidy in a large juvenile population using routinely available genotype intensity information.

Methods

Genotype and genotype intensity data was available on 145,476 female dairy and beef cattle below 15 months of age at the time of genotyping, with no recorded progeny. Genotype intensity data included the LogR Ratio (LRR), R-value (the sum of X and Y SNP probe intensities), …

Grass-Based Supplementation To Reduce Slaughter Age In Dairy-Beef Steers, Jamie O'Driscoll

ORBioM (Open Research BioSciences Meeting)

Background

Reducing slaughter age, while maintaining carcass output, will improve the sustainability of beef production systems. This will result in lower lifetime emissions from cattle, while also reducing the carbon equivalent per kilogram of beef carcass. The objective of this study was to investigate the strategic use of concentrate feed within pasture-based dairy-beef steer production systems, to establish its effectiveness in reducing slaughter age in differing animal genotypes.

Methods

Three contrasting supplementation strategies were implemented: 1) grass only (GO), pasture only diet in the first and second grazing season, 2) intermediate (INTER), concentrate supplementation throughout the first grazing season, pasture …

The Detection Of Putative Recessive Lethal Haplotypes In Irish Sheep Populations, Rory Mcauley

ORBioM (Open Research BioSciences Meeting)

In livestock populations, recessive lethal alleles are a known contributor to poor reproductive performance due to embryonic death in homozygous individuals. Despite their lethal effect in the recessive form, these alleles may be maintained at high frequencies among carrier animals because of their positive pleiotropic effects on economically important traits. Although several such recessive alleles have been identified in cattle and pig populations, limited studies have been completed in sheep, and none within Irish sheep populations. Genotype data for 69,034 animals from five major Irish sheep breeds genotyped on a variety of panels was available for this study. Only animals …

Oregon State Rank Assessment For Paiute Sculpin (Cottus Beldingii), Misty Nelson

Institute for Natural Resources Publications

Oregon state conservation status assessment for Paiute sculpin (Cottus beldingii) using NatureServe methodology, 2023.

Fisheries Science Update - Pilbara Demersal Scalefish Resource - November 2023, Department Of Primary Industries And Regional Development, Western Australia

Fisheries Science Updates

Key points: 2023 stock assessment outcomes:

• The Pilbara Demersal Scalefish Resource (PDSR) spans from the North West Cape to 120ºE and comprises over 60 demersal scalefish species, including indicator species red emperor, rankin cod, and bluespotted emperor.
• The PDSR is accessed by recreational fishers, charter operators and three commercial fisheries: Pilbara Fish Trawl (Interim) Managed Fishery, Pilbara Trap Managed Fishery, and the Pilbara Line Fishery.
• The PDSR is a key ‘food bowl’ for Western Australia, supplying the local market with about 2,500 tonnes of demersal scalefish annually.
• The PDSR provides unique and valuable recreational fishing opportunities at locations such as …

Fisheries Science Update - Spanish Mackerel - November 2023, Department Of Primary Industries And Regional Development, Western Australia

Fisheries Science Updates

Key Points: 2023 stock assessment:

• The statewide large pelagic finfish resource (SWLPR) is distributed throughout Western Australia (WA) and includes a range of tropical and temperate pelagic species.
• Spanish mackerel is an indicator species for the SWLPR.
• The latest stock assessment provides a ‘health check” on the status of WA Spanish mackerel statewide and in each management region.
• The 2023 stock assessment shows WA Spanish mackerel remains sustainable with some concerns in the Pilbara region.
• Current management measures are expected to maintain WA Spanish mackerel at an acceptable level outside the Pilbara region.
• The next Spanish Mackerel stock assessment is …

Incorporation Of Probiotics And Other Functional Ingredients In Dairy Fat-Rich Products: Benefits, Challenges, And Opportunities, Kritika Gaba, Sanjeev Anand

Dairy Science and Food Science Faculty Publications: 2022 to Present

This review focuses on the potential opportunities to incorporate functional ingredients like probiotics in the dairy fat-rich matrix to develop functional foods. Many dietary guidelines and the relevant literature have in general indicated many benefits of consuming milk-fat-rich products for the human body. Milk fat contains essential nutrients, including fat-soluble vitamins; short-, medium-, and long-chain with odd and branched chain fatty acids; essential amino acids; and calcium, which are all known for their bioactive properties. In addition, the incorporation of probiotics, which are known for their bioactive properties, could further enhance the products’ attributes. However, direct probiotic addition is known …

Impact Of Transglutaminase Treated Micellar Casein Concentrate And Milk Protein Concentrate On The Functionality Of Processed Cheese Product Slice Formulations, Prafulla Salunke, Lloyd E. Metzger

Dairy Science and Food Science Faculty Publications: 2022 to Present

Milk protein concentrate (MPC) is used as an ingredient in processed cheese product (PCP) formulations. However, its use can result in texture defects such as a soft body and restricted melting characteristics. The use of micellar casein concentrate (MCC), which has a higher level of casein and less serum protein, improves the texture of PCP. Further improvement in PCP products may be possible using transglutaminase (TGase), an enzyme that can crosslink proteins. This study aimed to determine the effect of TGase treatment of MPC and MCC retentates on the functionality of MPC and MCC when used in a PCP slice …

Yellowtail Snapper, Abigayle Groth, David Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

No abstract provided.