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Biomechanical Modeling Of Forelimb Adduction In The Eastern Mole, Scalopusaquaticus, Mark Sandefur

Mahurin Honors College Capstone Experience/Thesis Projects

The hypertrophied musculoskeletal system driving adduction of Sealopus aquatieus's forelimb supports the locomotion of these burrowing subterranean mammals. Due to the excessive bulk of the major muscles contributing to this action, it was thought that this particular species may represent a rare case of a mammalian species with a greatly enhanced force contribution from each muscle, correlating with a reduction in the potential for the forelimb to adduct at a high velocity. By assessing the lever ratios of five significant muscles contributing to forelimb adduction, combined with vector analyses for the angles of these muscles' insertions, a model was established …

The Mayfly Newsletter, Peter M. Grant

The Mayfly Newsletter

The Mayfly Newsletter is the official newsletter of the Permanent Committee of the International Conferences on Ephemeroptera.

Effects Of Gregariousness, Conspicuousness, And Novelty On Blue Jay (Cyanocitta Cristata) Learned Avoidance And Stimulus Generalization Of Unpalatable Prey, Joyce M. Dykema

Avian Cognition Papers

I examined a variety of factors hypothesized to be important in the evolution and maintenance of aposematism. Aposematism occurs when prey individuals advertise their toxic or otherwise aversive nature to potential predators via evolved conspicuous signals. I conducted three experiments in which blue jays (Cyanocitta cristata) were allowed to search a printed grayscale pixilated background for grayscale pixilated moths in an open room. I manipulated moth appearance and food reward, and recorded jay predation on the varying moth stimuli. In my first experiment, I repeated Alatalo & Mappes’ (1996) study examining the effects of prey gregariousness, or grouping, …

Community Response To Habitat Restoration In Sickle And Bear Creeks, With Emphasis On Mottled Sculpin In Sickle Creek, Jason Andrew Deboer

Masters Theses

Habitat restoration is employed by biologists and managers to improve the natural functionality and value of aquatic resources. Systems suffer impairment from many sources, including excessive fine sediment, which negatively affects substrate composition, channel morphology, aquatic invertebrate habitat, and fish reproduction and recruitment. Primary objectives included monitoring the biophysical response to sediment abatement in the Big Manistee River watershed. Secondary objectives included (1) placing the biophysical response to the restoration in the context of a much larger watershed plan, (2) quantifying seasonal mottled sculpin movement and habitat use in Sickle Creek for 1-year, and (3) determining habitat variables which may …

A New Reproductive Mode In The Genus Melanzophryniscus Gallardo, 1961 (Anura: Bufonidae) With Description Of A New Species From The State Of Paraná, Brazil, José A. Langone, Magno V. Segallo, Marcos Bornschein, Rafael O. De Sá

Biology Faculty Publications

A new species of bufonid toad of the genus Melanophryniscus is described from a mountaintop that is part of the Serra do Mar in the northeastern State of Paraná, Brazil. Melanophryniscus alipioi sp. nov. is distinguished from other known species by its uniformly dark brown dorsal color and a unique breeding site. The new species reproduces in bromeliads, a reproductive mode previously unknown for this genus. This species might be susceptible to current habitat lost.

Measuring Bite Force In Small Mammals With A Piezo-Resistive Sensor, Patricia W. Freeman, Cliff A. Lemen

University of Nebraska State Museum: Mammalogy Papers

We tested the use of piezo-resistive force sensors to measure bite force in small mammals. These force sensors are thin (less than 1 mm) and can be used to measure forces up to 4,500 N. A battery-operated unit, ideal for field research, can be built easily and inexpensively. We tested this sensor in the laboratory and in the field on a variety of small mammals. Although our results indicate that the sensor is somewhat less accurate (coefficient of variation = 4%) than a conventional load cell, the small size and ease of use of the piezo-resistive detector is highly desirable. …

Aquatic And Terrestrial Habitat Use Of The Australian Freshwater Turtle, Chelodina Expansa, Ellyn Ercolano

Independent Study Project (ISP) Collection

Organisms select habitats that provide the best possible resources necessary to their survival. Organisms may occupy and utilize a home range which requires specific selection of components in their available habitat. Monitoring the threats to a species within their habitats is a crucial tool in conservation and management practices. The Murray-Darling Basin of south-eastern Australia has suffered alterations to its hydrology, flow regime, catchment size and usage, flooding cycles, as well as from vast removal of vegetation in the floodplains since European settlement in Australia in the mid-nineteenth century. Knowledge of the habitat use of a focal species can guide …

Law, Biology Professor Val Nolan Dies

Val Nolan Jr. (1976 Acting; 1980 Acting)

No abstract provided.

The Maya Footprint: Soil Resources Of Chunchucmil, Yucatan, Mexico, Ryan V. Sweetwood

Theses and Dissertations

Agricultural yields in Northwest Yucatán are constrained by climate, thin soils, and low fertility. Despite this, the ancient Maya city of Chunchucmil Yucatán, Mexico, boasted an immense, dense, and wealthy population during the Middle Classic period (ca A.D. 400-700). Soil physical and chemical properties were explored to determine how the ancient Maya of Chunchucmil fed themselves. Soil profiles were collected from various locations within ancient Chunchucmil's suspected sustaining area. The physical and chemical properties, carbon isotopes, black carbon, and coprostanols of soil profiles sampled were compared to ancient rural settlement and remotely sensed images, such as AIRSAR (airborne synthetic aperture …

Eco-Social Analysis Of An East African Agro-Pastoral System: Management Of Tsetse And Bovine Trypanosomiasis, Johann Baumgärtner, Gianni Gilioli, Getachew Tikubet, Andrew Paul Gutierrez

All Peer-Reviewed Publications

A key constraint for development of many East African agro-pastoral communities is African animal trypanosomiasis or nagana caused by Trypanosoma spp. and vectored by species of tsetse flies (Glossina spp.). Suppression of trypanosomiasis through trapping of tsetse fly populations was conducted from 1995 to 2005 at and near Luke, Southwest Ethiopia. Odor baited mass trapping technology was used to suppress adult fly populations to very low levels while tryponocidal drugs were used to treat trypanosome infections in cattle. Data on ecological, economic and social variables were collected and analyzed in the context of eco-social dynamics in the community. The bio-economic …

Functions, Structure, And Read-Through Alternative Splicing Of Feline Apobec3 Genes, Carsten Munk, Thomas W. Beck, Jorg Zielonka, Agnes Hotz-Wagenblatt, Sarah Chareza, Marion Battenberg, Jens Thielebein, Klaus Cichutek, Ignacio G. Bravo, Stephen J. O'Brien, Martin Lochelt, Naoya Yuhki

Biology Faculty Articles

Background:

Over the past years a variety of host restriction genes have been identified in human and mammals that modulate retrovirus infectivity, replication, assembly, and/or cross-species transmission. Among these host-encoded restriction factors, the APOBEC3 (A3; apolipoprotein B mRNA-editing catalytic polypeptide 3) proteins are potent inhibitors of retroviruses and retrotransposons. While primates encode seven of these genes (A3A to A3H), rodents carry only a single A3 gene.

Results:

Here we identified and characterized several A3 genes in the genome of domestic cat (Felis catus) by analyzing the genomic A3 locus. The cat genome presents one A3H gene and three …

Moderate Zinc Restriction Affects Intestinal Health And Immune Function In Lipopolysaccharide-Challenged Mice, Daniel G. Peterson, Angus G. Scrimgeour, James P. Mcclung, Elizabeth A. Koutsos

Animal Science

Zinc (Zn) is an essential nutrient that affects immune function, especially within the digestive system, although the underlying mechanisms are not well understood. This study examined the effects of short-term moderate Zn restriction on intestinal health and immune function in lipopolysaccharide (LPS)-challenged mice through plasma cytokine profiling and histological evaluation of intestinal tissue sections. Adult male mice were fed with a Zn-adequate (40 ppm) or a Zn-marginal (4 ppm) diet for 4 weeks, and then a bacterial challenge was simulated by intraperitoneal injection of LPS (10 μg/g body weight [BW]) or saline (control). BW was recorded weekly, and feed intake …

Fisheries Research Report No. 170 - Biomass And Commercial Catch Estimates For Abalone Stocks In Areas Proposed As Sanctuary Zones For The Capes Marine Park, A. Hesp, Neil R. Loneragan, Norman G. Hall, H T. Kobryn, A.M. Hart, Frank Fabris, Jeremy Prince

Fisheries Research Reports

This study was undertaken to estimate the biomasses, biologically sustainable catches and current average annual commercial catches of three fished species of abalone, Haliotis roei (Roei), Haliotis laevigata (Greenlip) and Haliotis conicopora (Brownlip) in the proposed sanctuaries of the Capes Marine Park, south-western Australia. The current annual, catch estimates represent the catches that would be foregone by commercial fishers if the sanctuaries are implemented and will be used to evaluate the potential compensation to fishers (not part of this study). The biomass and catch estimates for each species in the proposed sanctuaries were estimated from a combination of scientific survey …

A Strategy For Managing The Recreational Catch Of Demersal Scalefish In The West Coast Bioregion., Department Of Fisheries Western Australia

Fisheries Management Papers

The recreational management proposals that follow have been developed to deliver the required reduction in catches, while still allowing an enjoyable fishing experience for the majority of West Australians. If only a single management tool was used (e.g. a boat limit or closed season) the impact on recreational fishing would be huge. Therefore, the proposed management package has been carefully developed so that each management measure adds to the reduction required, while minimising the social and economic impacts as much as possible.

Fisheries Research Report No. 173 - Evaluation Of The Effectiveness Of Reducing Dolphin Catches With Pingers And Exclusion Grids In The Pilbara Trawl Fishery, Peter Stephenson, S. Wells

Fisheries Research Reports

Final FRDC Report – Project 2004/068

“Savewave” acoustic pingers were trialed on one vessel to determine if they would deter dolphins entering the trawl net. During daylight hours, the pingers were deployed on alternate shots in the configuration recommended by the manufacturer. On the other alternate shots, no pingers were deployed. A video camera in an underwater housing was attached to the headrope facing downstream for 18 trawl shots. On the 14 shots where usable video footage was obtained (11 with pingers deployed and 7 with pingers not deployed) the number of dolphins viewed in the camera frame was counted …

Ecology Of The Missouri River: Missouri River Creel Survey, Bellevue Bridge To Camp Creek, 31 March Through 12 October 2007. Supplement I, Gerald Mestl

Nebraska Game and Parks Commission: White Papers, Conference Presentations, and Manuscripts

This report describes Missouri River activities and results related to a channelized Missouri River creel survey conducted from 29 March through 10 October 2003. This is the fourth of a planned annual creel survey to be conducted on alternating sections of the channelized Missouri River to measure changes in recreational fishing activity, especially those changes due to large scale habitat restoration efforts. Future reports will contain additional analyses of these data.

Anglers spent over 30,000 hours fishing the Missouri River from Camp Creek (rk 883.5) to the Kansas state line (rk 790.2) during the survey period. Effort peaked during the …

The Adaptive Evolution Of The Mammalian Mitochondrial Genome, Rute R. Da Fonseca, Warren E. Johnson, Stephen J. O'Brien, Maria J. Ramos, Agostinho Antunes

Biology Faculty Articles

Background

The mitochondria produce up to 95% of a eukaryotic cell's energy through oxidative phosphorylation. The proteins involved in this vital process are under high functional constraints. However, metabolic requirements vary across species, potentially modifying selective pressures. We evaluate the adaptive evolution of 12 protein-coding mitochondrial genes in 41 placental mammalian species by assessing amino acid sequence variation and exploring the functional implications of observed variation in secondary and tertiary protein structures.

Results

Wide variation in the properties of amino acids were observed at functionally important regions of cytochrome b in species with more-specialized metabolic requirements (such as adaptation to …

A Songbird Forebrain Area Potentially Involved In Auditory Discrimination And Memory Formation, Raphael Pinaud, Thomas A. Terleph

Biology Faculty Publications

Songbirds rely on auditory processing of natural communication signals for a number of social behaviors, including mate selection, individual recognition and the rare behavior of vocal learning - the ability to learn vocalizations through imitation of an adult model, rather than by instinct. Like mammals, songbirds possess a set of interconnected ascending and descending auditory brain pathways that process acoustic information and that are presumably involved in the perceptual processing of vocal communication signals. Most auditory areas studied to date are located in the caudomedial forebrain of the songbird and include the thalamo-recipient field L (subfields L1, L2 and L3), …

A Synaptic Basis For Auditory-Vocal Integration In The Songbird, Eric E. Bauer, Melissa J. Coleman, Todd F. Roberts, Arani Roy, Jonathan F. Prather, Richard Mooney

WM Keck Science Faculty Papers

Songbirds learn to sing by memorizing a tutor song that they then vocally mimic using auditory feedback. This developmental sequence suggests that brain areas that encode auditory memories communicate with brain areas for learned vocal control. In the songbird, the secondary auditory telencephalic region caudal mesopallium (CM) contains neurons that encode aspects of auditory experience. We investigated whether CM is an important source of auditory input to two sensorimotor structures implicated in singing, the telencephalic song nucleus interface (NIf) and HVC. We used reversible inactivation methods to show that activity in CM is necessary for much of the auditory-evoked activity …

Staying Alive: Maximizing Live Bacteria In Fermented Products, Phillip S. Tong

Dairy Science

No abstract provided.

Expression And Evolutionary Relationships Of The Chenopodium Quinoa 11s Seed Storage Protein Gene, Mikel Stevens, Peter J. Maughan, Daniel J. Fairbanks, Marie R. B. Balzotti, Jennifer N. Thornton, David A. Mcclellan, Eric N. Jellen, Craig E. Coleman

Faculty Publications

Quinoa (Chenopodium quinoa Willd.) is a food crop cultivated by subsistence farmers and commercial growers on the high Andean plateau, primarily in Bolivia, Peru, and Chile. Present interest in quinoa is due to its tolerance of harsh environments and its nutritional value. It is thought that the seed storage proteins of quinoa, particularly the 11S globulins and 2S albumins, are responsible for the relatively high protein content and ideal amino acid balance of the quinoa seed. Here we report the genomic and cDNA sequences for two 11S genes representing two orthologous loci from the quinoa genome. Important features of the …

Historic Genetic Structuring And Paraphyly Within The Great-Tailed Grackle, Jeffrey M. Dacosta, Walter Wehtje, John Klicka

Ornithology Program (HRC)

The Great-tailed Grackle (Quiscalus mexicanus) and Boat-tailed Grackle (Q. major) are sister species that have expanded their ranges during historical times. This expansion has created an area of sympatry between these species in Texas and Louisiana, and between distinctive Great-tailed Grackle subspecies in the southwestern United States and northern Mexico. We investigated the evolutionary histories of both species using mitochondrial DNA sequence data and modern phylogenetic methods. Our results reveal genetic structure within Great-tailed, but not Boat-tailed Grackles. Great-tailed Grackles are separated into two clades, but range expansion in the north has led to secondary contact …

Neural Correlates Of Auditory Processing, Learning And Memory Formation In Songbirds, Raphael Pinaud, Thomas A. Terleph, Ryan D. Wynne, Liisa A. Tremere

Biology Faculty Publications

Songbirds have emerged as powerful experimental models for the study of auditory processing of complex natural communication signals. Intact hearing is necessary for several behaviors in developing and adult animals including vocal learning, territorial defense, mate selection and individual recognition. These behaviors are thought to require the processing, discrimination and memorization of songs. Although much is known about the brain circuits that participate in sensorimotor (auditory-vocal) integration, especially the “songcontrol” system, less is known about the anatomical and functional organization of central auditory pathways. Here we discuss findings associated with a telencephalic auditory area known as the caudomedial nidopallium (NCM). …

Disseminating (And Taking Control Of) Your Scholarly Research, Paul Royster

Department of Animal Science: Departmental News

How faculty authors can maximize the dissemination of their scholarly work by taking advantage of open-access journals, publishers' self-archiving policies, the federal employees loophole, and other strategies. Includes description and recruitment message for UNL Digital Commons institutional repository.

Aerial Census Techniques For Whooping Cranes On The Texas Coast, Thomas V. Stehn, Thomas E. Taylor

Proceedings of the North American Crane Workshop

The U.S. Fish and Wildlife Service, using aerial surveys, regularly monitors the whooping crane (Grus americana) population wintering along the Texas coast. These regular census flights began in 1950 and have produced a long-term data set on the growth of a small population of endangered birds. This paper describes the specific methodology used by the authors during census flights.

2008 Interior Least Tern And Piping Plover Monitoring, Research, Management, And Outreach Report For The Lower Platte River, Nebraska, Mary Bomberger Brown, Joel G. Jorgensen

School of Natural Resources: Faculty Publications

This document reports on our monitoring, research, management, and outreach activities during the past 12 months. The report was prepared to inform our partners and funding agencies of our activities and to provide a preliminary summary of results. These data analyses are not final and should be treated as such when citing information, data, or analyses found in this document.

The Interior Least Tern (Sternula antillarum athallassos) is a state and federal endangered species; it was first listed in 1985. The Piping Plover (Charadrius melodus) is a state and federal threatened species; it was also first …

Terrapene Ornata (Ornate Box Turtle) Predation On Cliff Swallows, Mary Bomberger Brown, Charles R. Brown

School of Natural Resources: Faculty Publications

During a 25-year study of Cliff Swallows (Petrochelidon pyrrhonota) in southwestern Nebraska, we observed Terrapene ornata prey, or attempt to prey, on swallows. On one occasion as large numbers of birds flushed and hit the net, the weight of the birds pulled the net down to ground level. One T. ornata, which was seen regularly at the colony, approached one adult Cliff Swallow that was very low in the net and killed it by biting and eating its head. After killing the bird, the turtle walked away carrying the head.

Experimental Inoculation Of House Sparrows (Passer Domesticus) With Buggy Creek Virus, Kathryn P. Huyvaert, Amy T. Moore, Nicholas A. Panella, Eric A. Edwards, Mary Bomberger Brown, Nicholas Komar, Charles R. Brown

School of Natural Resources: Faculty Publications

We performed experimental inoculations of house sparrows (Passer domesticus) with Buggy Creek virus (BCRV), a poorly known alphavirus (Togaviridae) vectored primarily by the swallow bug (Hemiptera: Cimicidae: Oeciacus vicarius) that is an ectoparasite of the cliff swallow (Petrochelidon pyrrhonota) and house sparrow. Viremias were detected by plaque assay in two of six birds on days 1–3 postinoculation; viremia was highest on day 2. Viral RNA was detected by reverse transcriptase-polymerase chain reaction (RT-PCR) in blood of six of 12 birds ranging from day 1 to day 15 postinoculation. Infectious BCRV was detected in …

Extra-Pair Paternity In Sandhill Cranes, Matthew A. Hayes, Hugh B. Britten, Jeb A. Barzen

Proceedings of the North American Crane Workshop

Although cranes are known for “life-long” pair bonds, exceptions to this rule have been observed (i.e. divorcing pairs and individuals re-pairing following the death of a mate). With advancements in genetic techniques, another form of infidelity has been observed: extra-pair paternity (EPP; producing young with a bird while being socially paired to another mate) has been documented in many avian species. Is this true for cranes as well? Sandhill cranes (Grus canadensis) from a dense breeding population in southcentral Wisconsin were tested for EPP using 6 microsatellite DNA markers. The frequency of EPP ranged between 4.4% (2 of 45 chicks) …

Mate Fidelity In A Dense Breeding Population Of Sandhill Cranes, Matthew A. Hayes, Jeb A. Barzen, Hugh B. Britten

Proceedings of the North American Crane Workshop

The objective of this study was to investigate mate switches observed in a dense breeding population of banded Sandhill Cranes (Grus canadensis). Over a 14-year period, 50 of 70 breeding pairs switched mates (71%), with 45 pairs switching permanently (64%). Mean mate retention between years was 83%, with an average pair bond lasting 5.7 years (range 1-13 years). Most permanent switches occurred following the death or disappearance of a mate, and overall permanent divorce (19%; 13 of 70 pairs) and annual divorce rates (6%) were low. Territory retention following mate switches was high. Males and females did not …