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Minimising Gear Conflict And Resource Sharing Issues In The Shark Bay Trawl Fisheries And Promotion Of Scallop Recruitment, Mervi I. Kangas, Arani Chandrapavan, Y L. Hetzel, Erroll C. Sporer

Fisheries Research Reports

Objectives 1. To determine size specific recapture mortality rates of Amusium balloti as a result of repeated capture and release experiments and gear impacts on newly recruited (juvenile) scallops. 2. To determine the impacts of various scallop mesh sizes for the capture of the target size of Amusium balloti and its impact on damage to and retention of prawns. 3. To investigate if small-scale spatial closures assist recruitment of Amusium balloti by reducing gear impacts and capture mortality but without affecting overall prawn catches. 4. To examine whether existing hydrodynamic models can guide the selection of spatial closures and to …

A Study Of The Spawning Ecology And Early Life History Survival Of Bonneville Cutthroat Trout, Phaedra E. Budy, Sarah Wood, Brett B. Roper

Watershed Sciences Faculty Publications

We completed a large-scale field experiment in four tributaries of the Logan River, Utah, where the largest metapopulation of imperiled Bonneville cutthroat trout Oncorhynchus clarkii utah persists. We documented the spatial and temporal distributions of spawners, quantified substrate use versus substrate availability, and evaluated differences in hatch and emergence fry success between and among sites in relation to habitat characteristics. We observed considerable variability in the timing, magnitude, and duration of spawning among study areas (streams), in part as a function of a variable, multipeaked hydrograph. Nevertheless, across study areas, >70% of redds were constructed on the final descending limb …

Investigation Of A Locus On Chromosome 9 For Contributions To Pulmonary Hypertension Syndrome In Broilers, Sriram Krishnamoorthy

Graduate Theses and Dissertations

Although the ascites syndrome in chickens has been investigated for years, it continues to inflict financial losses to the world poultry industry. It is estimated that 8% of the 361 million broiler deaths are due to ascites leading to losses of millions of dollars annually. Efforts to curb the incidence of ascites are typically designed to slow early growth. This limits the birds' ability to show its true genetic potential and impacts later yields. In 1994 lines divergent for susceptibility to ascites were established from a commercial sire line through sibling selection of birds reared at local altitude after testing …

Genomic Analysis Of Characteristics In Swine Contributing To Sow Longevity, Julie Kathleen Tart

Department of Animal Science: Dissertations, Theses, and Student Research

Selection for improved sow lifetime reproductive longevity is of growing importance to swine producers due to recent increases in sow culling rates. Traditional selection results in minimal response due to low heritability and late expression of the trait; incorporation of DNA markers into selection programs could be a more economically viable tool and improve lifetime reproductive performance.

In order to assess the relationship between markers and reproductive longevity, 967 gilts from two maternal crossbred lines were evaluated for age at puberty (AP), litter size traits, and number of successful parities (SP). Females were culled only for death, unsoundness, or reproductive …

Territories,Territoriality, And Conservation Of The Louisiana Waterthrush And Its Habitat, The Watershed Of The Upper Buffalo National River, Leesia Cheryl Marshall

Graduate Theses and Dissertations

The Louisiana Waterthrush, Parkesia motacilla, is a migratory wood-warbler and breeding season resident of the eastern United States. Males defend breeding territories that extend linearly along clear, fast-flowing, gravel-bottomed, forest streams. Defense includes two song types, primary and extended song. As riverine specialists, birds rely upon aquatic invertebrates as prey and riparian habitat features for nesting. They use a unique foraging maneuver, leaf-pulling, that involves picking up or pulling a leaf from water, and turning it over to search for prey. Their relationship with riparian habitat introduces potential for Louisiana Waterthrushes to serve as indicators of stream health. The …

Stable Isotope Analysis (Delta Nitrogen-15 And Delta Carbon-13) And Bioenergetic Modeling Of Spatial-Temporal Foraging Patterns And Consumption Dynamics In Brown And Rainbow Trout Populations Within Catch-And-Release Areas Of Arkansas Tailwaters, Jon M. Flinders

Graduate Theses and Dissertations

I examined spatial and temporal consumption dynamics using an energy intake model and a bioenergetics model of rainbow trout, Oncorhynchus mykiss, and brown trout, Salmo trutta, within three catch-and-release (C-R) areas in Bull Shoals and Norfork tailwaters to determine whether trout populations were limited by food supply. I also examined the seasonal and ontogenetic shifts in the foraging patterns of brown and rainbow trout within these areas using gut content analysis (GCA) and stable isotope analysis (SIA) of C and N. I examined 605 brown trout and 768 rainbow trout for GCA and SIA at Bull Shoals, Norfork, …

Feed Supplementation With Natural Extracts Of Cranberry And Its Efficacy On Campylobacter Colonization In Poultry, Ann Woo-Ming

Graduate Theses and Dissertations

Campylobacter spp. has been identified as one of the leading causative agents of food borne diarrheal illness. Epidemiological evidence has shown that poultry is the main source for human infection. Poultry are asymptomatic carriers of Campylobacter within their gastrointestinal tract, with colonization levels reaching 106-108 cfu/g cecal content. Surveys of domestic poultry flocks have estimated that approximately 90% of flocks are positive for Campylobacter colonization. Risk assessment studies have determined that by reducing levels of Campylobacter colonization during rearing, incidences of human infection will be significantly reduced. Currently there are no consistently effective treatments to eliminate Campylobacter from poultry flocks. …

Intake, Digestibility, Insitu Disappearance And Ruminal Fermentation Of Bermuda Grass Hay By Lactating Beef Cows Offered Corn Or Hominy Feed As Supplements, Zibani Madzonga

Graduate Theses and Dissertations

Hominy feed, a co-product of dry corn milling, has been evaluated to a limited extent in feedlot and dairy rations, but has not been evaluated as a supplemental energy source for lactating beef cows. The objective of this study was to determine the effect of level of hominy feed supplementation on intake, digestibility, in situ DM disappearance, and ruminal fermentation characteristics of medium quality bermudagrass hay. Five ruminally cannulated lactating beef cows (BW = 596 kg, SE = 13.9) were used in an experiment with a 5 × 5 Latin square design. Treatments were low hominy (LH; 0.25% …

Growth Promoting Implants And Nutrient Restriction Prior To Feeding: Effect On Carcass Composition, Carcass Quality, And Consumer Acceptability Of Beef, Jessica Ann Robinette

Graduate Theses and Dissertations

Implant strategy and nutrient restriction prior to finishing may alter feedlot performance, as well as carcass characteristics and consumer acceptability of beef. The objectives of these studies were to determine the effect of prefinishing implant strategy and plane of nutrition on prefinishing and feedlot performance, carcass characteristics and quality, and consumer acceptability of beef. In 2 experiments, spring-born calves were weaned in the fall (Exp. 1, n =120; and Exp. 2, n = 96) and were either finished as calves (CALF-FED) or placed on a growing program with a target ADG of 0.45 kg/d (RSTR) or 0.91 kg/d (UNRSTR) before …

Raptors Present But Unobserved: Detectability At A Western Migration Watch-Site And Its Effect On Trend Analysis, Eric G. Nolte

Boise State University Theses and Dissertations

Annual counts of migrating raptors (Accipitriformes, Falconiformes) are used as indices of population size. Variation in the proportion of the raptor population counted may decrease precision of trend estimates, thereby reducing power of inference. The proportion counted is the product of sample coverage and probability of detection. It is possible to improve the power of trend analysis by the adoption of techniques, such as double-observer or distance sampling, which estimate the probability of detection. I used a dependent double-observer method to estimate detectability at the annual fall raptor migration count at Lucky Peak, Idaho, in 2009 and 2010. …

A Role Of Environmental Components In Autoimmune Vitiligo Of Smyth Line Chickens, Lei Dong

Graduate Theses and Dissertations

The Smyth line (SL) of chickens is a well-established animal model for the study of spontaneous autoimmune vitiligo, displaying all the characteristics of human vitiligo. In humans, phenolic derivative 4-tertiary butyl phenol (4-TBP) has been shown to trigger vitiligo in susceptible individuals. In vitiligo-prone SL-chickens, live turkey herpesvirus (HVT) infection at hatch was identified as the most effective trigger of SL-vitiligo expression. This dissertation examined the role of the environmental factors 4-TBP and HVT in the etiology of SL-vitiligo. Specifically, the generation of reactive-oxygen-species by melanocyte-containing feather tissue (MC-FT) and cultured melanocytes in response to 4-TBP exposure in vitro (Study …

Cell-Mediated Immunity In Porcine Reproductive And Respiratory Syndrome Virus, Rajeshwari Parida

School of Veterinary and Biomedical Sciences: Dissertations, Theses, and Student Research

Porcine reproductive and respiratory syndrome virus is a significant swine pathogen which exhibits considerable sequence diversity. In an attempt to identify highly conserved T-cell epitopes contained in proteins of this virus, we examined heptadecamer peptides spanning the sequence of the PRRSV nonstructural proteins 9, 10 and 11, all of them are highly conserved, for their ability to elicit a recall proliferative and interferon-gamma response in peripheral blood mononuclear cells obtained from pigs immunized against the type-II PRRSV strain FL-12. These studies led to the identification of seven peptides, two from each NSP 9 and NSP 10 and, three from NSP …

Nest And Brood Site Selection And Survival Of Greater Prairie-Chickens In The Eastern Sandhills Of Nebraska, Lars Anderson

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Greater prairie-chickens (Tympanuchus cupido pinnata) are a grassland bird species of conservation concern. Although greater prairie-chickens have declined over much of their range, the Nebraska Sandhills has the largest population in North America. However, the responses of nest and brood site selection and survival to vegetation characteristics are unknown. I studied prairie-chickens on private rangelands in Rock and Brown Counties from 2009-2011. I fitted 139 females with radio collars to locate nest and brood sites and to determine nest and brood survival rates. Females were trapped on leks during the breeding season and I monitored them throughout the …

Clam (Corbicula Fluminea) As A Potential Sentinel Of Human Norovirus Contamination In Freshwater, Xunyan Ye

Dissertations

The purpose of this study was to evaluate and validate the use of the clam Corbicula fluminea as a sentinel of human noroviruses (HuNoV) contamination in freshwater. The first specific aim was to develop a new method to extract HuNoV RNA from contaminated bivalves (e.g. oysters, clams) that would be much faster than existing methods. The procedure developed includes an initial total RNA extraction using TRI Reagent, followed by HuNoV RNA concentration and purification using biotinylated probe-capture technology. HuNoV RNA is finally detected by real-time RT-PCR. Using bivalve homogenates spiked with HuNoV, 100 PCR detection units of the virus was …

Endocrine Control Of Ovulation And Coordination Of Fetal And Uterine Interrelationships In Dairy Cattle, Jillian Fain

All Dissertations

Assessing pitfalls in reproductive efficiency of dairy cattle is often confounded by milk production, animal health, energy balance, and animal management practices, among others. Methods to reduce inefficiencies are classified in the following studies as maternal endocrine management, conceptus recognition, and uterine environment. The goal was to derive some insight into the mechanisms pre and post conception that can alter rates of pregnancy establishment. The initial study ascertained the ability to reduce progesterone (P4) dominance through additional PGF2-alpha (PGF) supplementation on efficiency of timed artificial insemination (TAI) in the Ovsynch® program. The single PGF animals received the standard Ovsynch® protocol …

In Vitro And In Vivo Comparison Of The Pathogenicity Of Four Influenza Virus Strains, Brett L. Hurst

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Influenza viruses cause between 3 and 5 million cases of respiratory infection each year and are responsible for between 250 and 500 thousand deaths. Two avenues for the treatment and prevention of influenza virus infections are vaccination and antiviral chemotherapy. Prevention is largely accomplished through vaccination. While vaccines remain the preferred method for controlling the spread of influenza, antiviral treatment is important for severe infections caused by new and emerging virus strains. Occasionally new viruses emerge to which the population has no previous immunity. Such was the case when the pandemic H1N1 influenza virus appeared in 2009. When new viruses …

Use Of Rumen Modifiers To Manipulate Ruminal Fermentation And Improve Nutrient Utilization And Lactational Performance Of Dairy Cows, Christopher M. Dschaak

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

A series of lactation studies reported in this dissertation hypothesized that supplementing different rumen modifiers would have consistent responses on ruminal fermentation and lactational performance under optimal rumen conditions.

The first experiment investigated the influence of magnesium exchanged zeolite on ruminal fermentation and lactational performance. Intake of dry matter (DM), milk yield, milk fat, and feed efficiency were not affected. Milk protein concentration tended (P = 0.15) to be higher for cows fed the zeolite. Ruminal pH tended to increase (P = 0.11) by feeding the sodium bicarbonate or the zeolite.

A second lactation experiment determined …

Effects Of Cache Valley Particulate Matter On Human Lung Cells, Todd L. Watterson

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

During the wintertime, residents of the Cache Valley are very aware of the poor air quality that occurs during cold-air inversion episodes. If one somehow avoids the radio and television announcements as well as the electronic roadside signs indicating poor air quality and encouraging less driving, one need only to look upward toward the mountains that surround the valley and notice the lack of daytime visibility. This lack of visibility and health warnings are due to particulate air pollution or particulate matter (PM). PM is only one of many types of regulated air pollution but is the one that occurs …

Characterization Of The Vasotocin Receptor Subtype 4 (Vt4r) In The Brain And Pituitary Gland Of The Chicken, Gallus Gallus, Rajamani Selvam

Graduate Theses and Dissertations

The present study investigated the distribution of the vasotocin subtype four receptor (VT4R) in brain and pituitary gland of the chicken, Gallus gallus. The anterior pituitary cell types associated with the VT4R were also determined. Two polyclonal antibodies were raised in rabbit against a cocktail of peptides, 15 amino acids from the amino terminal region and 17 amino acids from the carboxy terminal region of VT4R receptor. The antibody was validated utilizing the Western blot and immunocytochemistry. A single band at 47KDa utilizing membrane protein extracts of chicken brain and pituitary tissues was shown for the VT4R antibody. A peptide …

Timing Of Exposure To Toxic Tall Fescue: Effects On Beef Cattle Reproduction, Matthew Burns

All Dissertations

Tall fescue [Schedonorus phoenix (Scop.) Holub] is a native grass of Europe and was not widely used in the U.S. until the early to mid 1900's. Toxic tall fescue (E+) is the predominate, cool-season forage used in beef cattle production in the southern U.S., but grazing this forage is known to negatively impact growth and may impair reproductive performance. Two- and 3-yr old (young) beef cattle respond differently to synchronization protocols and have higher energy requirements compared with mature cows under normal management conditions. Interestingly, limited data indicate that young cattle reproductive performance is negatively impacted to a greater extent …

Lameness Associated With A Possible Neural Problem In The Lower Spinal Cord Of Chickens, Gallus Gallus, Gurueswar Nagarajan

Graduate Theses and Dissertations

Since the second half of the twentieth century lameness in broiler chickens has been known to be caused by different types of disorders, however the etiology of several type of lameness remain unknown. Because of the intense selection of broilers for rapid growth, some birds are more prone to physiological insults resulting in lameness. This study focuses on possible neural problems in the lower spinal cord associated with lameness in broilers. Broilers were raised in pens with wire floors and provided with food and water ad libitum. Three groups of birds 1) birds displaying a normal gait (Controls), 2) lame …

Genetic Analysis Of Chromosomal Regions Affecting Sperm Mobility In The Chicken (Gallus Gallus Domesticus), Sharath Chandra Munnaluri

Graduate Theses and Dissertations

This project is focused on determining the contributions of particular genetic loci to low sperm mobility in the chicken. Sperm mobility has been shown to be a major determinant of male fertility in broiler breeders. A whole genome SNP scan identified chromosomal regions (QTLs) that control sperm mobility. I used microsatellites from 4 chromosomal regions ( 15.151 on chromosome 6, 12.435 on chromosome Z, 12.341 on chromosome Z, and 17.214 on chromosome Z) to determine the association of these regions with sperm mobility in experimental lines divergently selected for mobility phenotype. Determination of the genetics underlying sperm mobility will identify …

Effects Of Management Strategies And Molecular Breeding Values On Cattle Performance And Carcass Traits, Benjamin Collins Williamson

Graduate Theses and Dissertations

Forty-eight Gelbvieh x Angus steers (265 ¡À 40 kg) were utilized to determine the relationships among molecular breeding values (MBV), steer performance, and carcass traits. Body weight (BW), hip height (HH), hip width (HW), exit velocity (EV; rate at which steers exited the squeeze chute and traversed 1.8 m) and body ultrasound measurements of steers were recorded at d 0, 93 and 154 of grazing mixed stockpiled endophyte-infected and -free tall fescue. Tissue samples were collected for genomic profiling (Igenity, Merial Limited, Duluth, GA). Steers were transported to the Oklahoma State U fed for 159 d, harvested and carcass parameters …

Personality Assessment In African Elephants (Loxodonta Africana), Kristina Marie Horback

Dissertations

The following study assessed personality in twelve African elephants using both observational behavior coding and standardized trait rating methods, thus demonstrating consistent individual differences across time and contexts. During the summer of 2010 and 2011, over 640 hours of behavioral data were collected onsite at the San Diego Zoo Safari Park in Escondido, CA. Four coding-based personality traits were determined after analysis: PLAYFUL, CURIOUS, TOLERANT, and, AGGRESSIVE. This data was then compared to survey ratings completed by the animal keeper staff during both summers. Four rating-based personality traits resulted from this analysis: PLAYFUL, CURIOUS, TIMID, and, AGGRESSIVE. All eight composite …

Initial Trends In The Kentucky Buck Test Program, Robert S. Kelly

Morehead State Theses and Dissertations

A thesis presented to the faculty of the College of Science and Technology at Morehead State University in partial fulfillment of the requirements for the Degree of Master of Science by Robert S. Kelly on April 20, 2012.

Treatment With Or Elimination Of Vascular Endothelial Growth Factor A (Vegfa) Results In Altered Mrna Abundance Of Undifferentiated Spermatogonia Niche, Renewal And Differentiation Factors, Kevin M. Sargent

Department of Animal Science: Dissertations, Theses, and Student Research

Vascular Endothelial Growth Factor A (VEGFA) and its receptors are important for vascular development in the testis. Roles of VEGFA have been proposed in undifferentiated spermatogonia where proangiogenic isoforms are suggested to promote their self-renewal while antiangiogenic isoforms stimulate their differentiation. Thus, we treated male rats in vivo (perinatally with IP injections from P0-P2) with different VEGFA isoforms or an antibody to VEGFAxxxb (antiangiogenic isoforms) to determine if this would affect testis morphogenesis, expression of genes regulating the spermatgonial stem cell (SSC) niche and genes that regulate cell survival. Testis morphogenesis with VEGFA164 (1mg) isoform treatment increased cord area, reduced …

Nutrient Mass Balance And Performance Of Feedlot Cattle Fed Barley Based Diets In Large Pens In Western Canada, Erin M. Hussey

Department of Animal Science: Dissertations, Theses, and Student Research

Three separate large pen commercial feeding trials with approximately 9,000 heifers with either eight or ten reps/treatment were conducted at a Western Feedlots Ltd.- High River, a commercial feedyard near High River, AB, Canada. For all three experiments, Near Infrared Spectroscopy (NIRS) was used to segregate feed barley. In Exp. 1, barley was segregated based on digestible energy (DE) content as predicted by NIRS and heifers were fed low or high DE barley, or a 50:50 blend of the two. Feeding low DE barley improved weight gain, dry matter intake (DMI), and mortality; with little effect on carcass composition compared …

Out With The Old And In With The New: A Comparison Between Molecular And Traditional Techniques To Identify Parasitized Birds, Christian Guerrero

College of Arts and Sciences Poster Presentations

Traditionally, the identification of blood parasites has been based on visual examination of blood smears. This approach depends on individual expertise in making blood smears and identifying parasites, which can vary widely from person to person. Recent work has shown that reading blood smears is significantly less sensitive than using molecular studies in identification. Thus, the accuracy of the data can fluctuate greatly. This project compares the ability of investigators to identify infected birds using microscopes and blood smears with their ability to identify infected birds through molecular analysis of blood from the same sample.

During fall migration (September – …

See No, Smell No, Taste No Evil: How Sage-Grouse Detect Toxic Sagebrush, K. Gehlken, B. Robb, S. Agafonov, J. Forbey

College of Arts and Sciences Poster Presentations

There is increasing evidence that sage-grouse selectively consume individual and species of sagebrush that have the lowest concentrations of chemical defenses, or toxins. We propose that this selection requires the ability to see, smell or taste specific chemicals or groups of chemicals that vary quantitatively and qualitatively in sagebrush available throughout the winter range of sage-grouse. We are developing methods to determine if and how selected and avoided sagebrush may differ in color, smell and taste. We used ultraviolet and near infrared detectors to determine the variation in the "color" of phenolics in sagebrush. We used gas chromatography to determine …

Fishermen, Politics, And Participation: An Ethnographic Examination Of Commercial Fisheries Management In St. Croix, U.S. Virgin Islands, Cynthia Grace-Mccaskey

USF Tampa Graduate Theses and Dissertations

Currently, there is widespread debate regarding the overall status of the world's fisheries, with some researchers projecting their total collapse in only a few decades, and others concluding the situation is not quite as bleak. Additional debates include what strategies should be used to manage fisheries at various scales, and further research is needed to determine which strategies are most appropriate for use in particular situations and locales, as context is critical.

Recently, prominent common pool resources scholars have expressed the need for ethnographic approaches to studying resource management institutions in order to move beyond the current focus of simply …