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South Atlantic Stream Fish Assemblages: Multi-Scale Structuring Factors, Trait Associations And Channelization, And Responses To Dam Removal, Cathy Marion

All Dissertations

South Atlantic coastal plain wadeable streams are unique and understudied freshwater environments that provide crucial habitats for a wide range of aquatic taxa. In Chapter 1, we investigated patterns in fish assemblages across South Carolina's coastal plain, and developed statistical models to identify the dominant multi-scale abiotic environmental factors that influence assemblage structure. Our analyses indicated the presence of four predominant fish assemblages that commonly occur in the coastal plain, which we termed the: 1) fluvial, 2) eastern mudminnow, 3) centrarchid, and 4) non-fluvial assemblages. Natural geographic gradients and instream habitat parameters associated with velocity, channel form, stream size, and …

Evaluation Of The Functional Capabilities Of Fins And Limbs For Moving On Land: Insights Into The Invasion Of Land By Tetrapods, Sandy Kawano

All Dissertations

Transitions to novel habitats present different adaptive challenges, producing captivating examples of how functional innovations of the musculoskeletal system influence phenotypic divergence and adaptive radiations. One intriguing example is the transition from aquatic fishes to tetrapods. Recent technological advances and discoveries of critical fossils have catapulted our understanding on how fishes gave rise to terrestrial vertebrates. Considerable attention has been paid to legged locomotion on land, but given that the first tetrapods were aquatic, limbs did not evolve primarily for terrestriality. How, then, is the locomotor function of limbs different from fins? Extant amphibious fishes demonstrate that fins can be …

Effects Of Animal Management Changes On The Activity Budgets And Walking Rates Of Zoo Elephants, Angela Dawn Mackey

Dissertations

The current study aimed to assess the effects of two management strategies, weekly rototilling of the enclosure and the provision of unpredictable foraging opportunities, on the daily behavior of six elephants housed at the San Diego Zoo. Observations took place from January to June 2013 and were conducted throughout a 24- hour period. The study was divided into three phases, each two months in duration. During the first phase (baseline) no changes were made to the current management routine of the elephants. In Phase 2, rototilling of the elephant enclosures was increased from once monthly to once per week, while …

Correlated Response To Selection And Effects Of Pre-Slaughter Environment On Meat Quality In Broilers Divergently Selected For Muscle Color, Isaac David Harford

Graduate Theses and Dissertations

Two broiler lines divergently selected for high (HMC) and low (LMC) muscle lightness (L*) were formed from a random bred control line (RBC). After eight generations of selection, three experimental trials were conducted to investigate the correlated response to selection and effects of pre-slaughter environment on meat quality in all three lines.

In the first experiment, a total of 100 birds from each line were bled for blood chemistry analysis and were evaluated for meat quality the following day. The HMC line had higher fillet drip loss (DL), L*, heterophil to lymphocyte ratio (H:L), and platelet count (Plt), and lower …

Effects Of Large Scale Growing Season Prescribed Burns On Movement, Habitat Use, Productivity, And Survival Of Female Wild Turkey On The White Rock Ecosystem Restoration Project Of The Ozark-St. Francis National Forest, Henry Tyler Pittman

Graduate Theses and Dissertations

Restoration of woodland and savanna ecosystems has become a common management strategy in the Central Hardwoods region. Over the past two decades forest managers have implemented woodland and savanna restoration at the landscape level (≥10,000 ha), especially using early growing season prescribed fire. The implementation of the restoration strategy has coincided with declines of Eastern Wild Turkey (Meleagris gallopavo silvestris) in many treated areas causing concern that early growing season prescribed fire was impacting wild turkey. We initiated our study to examine the effect of woodland and savanna restoration on the ecology and habitat of wild turkey in the Ozark …

Review: Zinc’S Functional Significance In The Vertebrate Retina, Harris Ripps, Richard L. Chappell

Publications and Research

This review covers a broad range of topics related to the actions of zinc on the cells of the vertebrate retina. Much of this review relies on studies in which zinc was applied exogenously, and therefore the results, albeit highly suggestive, lack physiologic significance. This view stems from the fact that the concentrations of zinc used in these studies may not be encountered under the normal circumstances of life. This caveat is due to the lack of a zinc-specific probe with which to measure the concentrations of Zn2+ that may be released from neurons or act upon them. However, a …

Sheep Updates 2014, James Kynge, David Lindsay, Johan Greeff, John Young, Luke Stephen, Graham Gardner, Stephen Lee, Bindi Murray, James Rowe

Sheep Updates

This session covers nine papers from different authors:

Genetic Research: A brave new world of opportunities

1. "China's Appetite" - The implications for WA, James Kynge, Chairman, FT Confidential Research, Emerging Markets Editor, Financial Times, London.

2. The genetics warm-up - the secret language of genetic research and its impacts on WA's sheep flock, Professor David Lindsay, University of Western Australia, Perth WA

The strength of genetic data: is it really valuable?

3. Genetic research in Western Australia - What have the compromises in production been? Johan Greeff, Senior Geneticist, Department of Agriculture and Food Western Australia

4. Show …

Production Of Recombinant Human Coagulation Factor Ix By Transgenic Pig, Weijie Xu

Department of Chemical and Biomolecular Engineering: Dissertations, Theses, and Student Research

Hemophilia B is the congenital bleeding disorder caused by deficiency in functional coagulation factor IX (FIX) and about 28,000 patients worldwide in 2012. And current treatment is restricted to protein-replacement therapy, which required FIX concentrates for patients’ life-time. Approximately 1 billion units FIX were consumed in 2012. However, still about 70-80% patients, mostly in developing countries, received inadequate or no treatment because of the unavailable and/or unaffordable FIX concentrates. Considering safety reasons, e.g. transmission of blood-borne diseases, the recombinant human FIX (rFIX) is recommended other than the plasma-derived FIX. However, only one rFIX is currently available on the market. The …

A Review On Effects Of Aloe Vera As A Feed Additive In Broiler Chicken Diets, Darabighane Babak, Samuel N. Nahashon

Agricultural and Environmental Sciences Faculty Research

Prohibition of application of antibiotic growth promoters in broiler chicken diets has resulted in increased use of herbs as natural additives in broiler feeds over the recent years. Researchers particularly look for herbs that can affect such parameters as growth performance, immune response, or treatment of certain diseases. Aloe vera is a well-known herb characterized by properties such as anti-bacterial, anti-viral, anti-fungal, anti-tumor, anti-inflammatory, immunomodulatory, wound-healing, anti-oxidant, and anti-diabetic effects. During the past years, attention has shifted toward Aloe vera as a natural additive to broiler diets, and studies have shown that Aloe vera can improve immune response and growth …

Infrared Thermal Image For Assessing Animal Health And Welfare, Irenilza Alencar Nääs, Rodrigo Garófallo Garcia, Fabiana Ribeiro Caldara

Assessment of Animal Welfare Collection

Infrared thermal imaging is a non-destructive testing technology that can be used to determine the superficial temperature of objects. This technology has an increasing use in detecting diseases and distress in animal husbandry within the poultry, pig and dairy production. The process can identify changes in peripheral blood flow from the resulting changes in heat loss and; therefore, have been a useful tool for evaluating the presence of disease, edema, and stress in animals. This paper reviews the current literature related to the use of infrared technology and discusses their results and implications in animal welfare issues, poultry, pig and …

Ontogenetic Diet Shifts And Prey Preference Of A Generalist Predatory Fish, Brittany Jalene Scharf

USF Tampa Graduate Theses and Dissertations

Marine ecosystems are highly dynamic and contain a diverse faunal assemblage that are subject to various natural and anthropogenic variability. Globally, seagrass ecosystems are located adjacent to coastal areas that are heavily impacted by human development and urbanization potentially altering the community structure within these ecosystem. Complex food webs connect many components of these systems, often in unexpected ways, and are ultimately based on one of two pathways: benthic (i.e., seagrass, epiphytes, microalgae, detritus) and planktonic (i.e., phytoplankton). Understanding the pathway which the food web is based gives further insight regarding the biological balance of the ecosystem; thus it is …

Long-Term Health Effects Of Neutering Dogs: Comparison Of Labrador Retrievers With Golden Retrievers, Benjamin L. Hart, Lynette A. Hart, Abigail P. Thigpen, Neil H. Willits

Endocrinology Collection

Our recent study on the effects of neutering (including spaying) in Golden Retrievers in markedly increasing the incidence of two joint disorders and three cancers prompted this study and a comparison of Golden and Labrador Retrievers. Veterinary hospital records were examined over a 13-year period for the effects of neutering during specified age ranges: before 6 mo., and during 6–11 mo., year 1 or years 2 through 8. The joint disorders examined were hip dysplasia, cranial cruciate ligament tear and elbow dysplasia. The cancers examined were lymphosarcoma, hemangiosarcoma, mast cell tumor, and mammary cancer. The results for the Golden Retriever …

Informing Flood Plain Wetland Restoration Using Amphibian Monitoring, Ashley Vanderham

School of Natural Resources: Dissertations, Theses, and Student Research

Wetlands are among the most important and complex ecosystems in the world. They contribute to nutrient cycling, the hydrologic cycle, and provide critical habitat for many plants, fish, and wildlife. Channelization of Missouri River resulted in the loss of many floodplain wetlands. Despite ongoing restoration efforts, there are few ecologically-based performance guidelines, and managers need methods to quantify and assess the success of restored riverine wetland systems.

In 2008 a multi-institutional herpetofauna monitoring project, funded by the U.S. Army Corps of Engineers, was initiated in four states (Kansas, Missouri, Iowa, and Nebraska). The main goal of the project is to …

Behavioral Observation And Paternal Investment Of Eastern Kingbirds At Malheur National Wildlife Refuge, Christopher Michael Chutter

Dissertations and Theses

We have been studying the population of Eastern Kingbirds breeding in riparian habitats in Malheur National Wildlife Refuge (eastern Oregon) since 2002. These efforts have created an ideal research environment wherein most adults in the population have been color banded and DNA sampled and, as part of other research projects, nearly all broods since 2003 have been paternity tested. I decided to use behavioral video recordings of parental nest behavior undertaken between 2003 and 2010 for two unrelated projects. First, I tested the effectiveness of video sampling nesting behavior (see below and chapter 2). Second, I tested whether male kingbirds …

The Birdman Of Colby: Eagle-Eyed Professor Herb Wilson Is Winging His Way Into The Hearts Of Students And Birders Alike, Robert Gillespie

Colby Magazine

Professor Herb Wilson's passion for ornithology is contagious- at Colby and in the community.

Secondary Dormancy And Summer Conditions Influence Outcomes In The Pyrenophora Semeniperda - Bromus Tectorum Pathosystem, Katie Karen Hawkins

Theses and Dissertations

Variable mortality of Pyrenophora semeniperda–infected Bromus tectorum seeds has been referred to as a “race for survival.” Dormant seeds are highly susceptible to P. semeniperda infection. While much is known about primary dormancy little is known about secondary dormancy in B. tectorum seeds. Dormancy status is not the only variable determining outcomes within the Bromus - Pyrenophora pathosystem. Varying temperature and intermittent hydration may strongly influence germination outcomes of B. tectorum in the presence of P. semeniperda. While it has long been assumed that B. tectorum seeds are infected by P. semeniperda in the fall it was recently suggested that …

Effects Of Nutritional Level Of Concentrate‐Based Diets On Meat Quality And Expression Levels Of Genes Related To Meat Quality In Hainan Black Goats, Dingfa Wang, Luli Zhou, Hanlin Zhou, Guanyu Hou, Liguang Shi, Mao Li, Xianzhou Huang, Song Guan

Faculty Publications

The present study investigated the effects of the nutritional levels of diets on meat quality and related gene expression in Hainan black goat. Twenty-four goats were divided into six dietary treatments and were fed a concentrate-based diet with two levels of crude protein (CP) (15% or 17%) and three levels of digestive energy (DE) (11.72, 12.55 or 13.39 MJ/kg DM) for 90 days. Goats fed the concentrate-based diet with 17% CP had significantly (P < 0.05) higher average daily gains (ADG) and better feed conversion rates (FCR). The pH 24h value tended to decrease (P < 0.05) with increasing DE levels. The tenderness of Longissimus dorsi muscle (LD) and Semimembranosus muscle (SM) reduced with increasing CP levels (P < 0.05). With increasing DE levels, tenderness was increased (P < 0.05). The heart fatty acid-binding protein (H-FABP) mRNA expression levels in LD and SM increased with increasing DE levels (P < 0.05), but decreased with increasing CP levels (P < 0.05). The calpastatin (CAST) and μ-calpain mRNA expressions levels in LD and SM were affected significantly (P < 0.05) by CP and DE levels in the diet. Therefore, the nutritional levels of diets affect meat quality and expression levels of genes associated with meat quality in Hainan black goats.

Are Gopher Tortosies (Gopherus Polyphemus Daudin) Comapatible With Cows?, Thomas William Hentges

USF Tampa Graduate Theses and Dissertations

Many Gopher Tortoise populations are in steep decline throughout Florida, and various measures have been attempted to curb the trend. One such measure is to relocate tortoises to protected recipient sites on private lands. The majority of private lands in Florida are used for cattle, however, production and the effect of cattle production on tortoises is not known. Here, I tested six parameters of tortoise behavior by monitoring 1403 gopher tortoises released at the Barthle Brothers Ranch, Pasco County Florida, between August 2009 and December 2012. The parameters tested were (1) burrow density, (2) burrow spacing, (3) burrow relocation, (4) …

Juvenile Green Sturgeon (Acipenser Medirostris) And White Sturgeon (Acipenser Transmontanus) Behavior Near Water-Diversion Fish Screens: Experiments In A Laboratory Swimming Fume, Jamilynn B. Poletto, Dennis E. Cocherell, Natalie Ho, Joseph J. Cech Jr., A. Peter Klimley, Nann A. Fangue

School of Natural Resources: Faculty Publications

Water diversions that extract fresh water for urban, industrial, and agricultural uses, as well as export to southern California, are prevalent throughout the Sacramento–San Joaquin watershed. Many water diversions are fitted with fish-exclusion screens designed to prevent fish from entrainment (i.e., being drawn in). The impact of fish screens on the behavior of migrating juvenile fishes remains largely unknown, especially for threatened species such as sturgeon. We placed individual juvenile green (Acipenser medirostris) or white (Acipenser transmontanus) sturgeon in a laboratory swimming flume in the presence of standard fish screens (2 mm bar spacing) at two …

Wpa News 94 (2014), World Pheasant Association

Galliformes Specialist Group and Affiliated Societies: Newsletters

WPA News (Summer 2014), number 94

Published by the World Pheasant Association

Artificial Neural Network Approach For Revealing Individuality, Group Membership And Age Information In Goat Kid Contact Calls, Livio Favaro, Elodie F. Briefer, Alan G. Mcelligott

Sentience Collection

Machine learning techniques are becoming an important tool for studying animal vocal communication. The goat (Capra hircus) is a very social species, in which vocal communication and recognition are important. We tested the reliability of a Multi-Layer Perceptron (feed-forward Artificial Neural Network, ANN) to automate the process of classification of calls according to individual identity, group membership and maturation in this species. Vocalisations were obtained from 10 half-sibling (same father but different mothers) goat kids, belonging to 3 distinct social groups. We recorded 157 contact calls emitted during first week, and 164 additional calls recorded from the same individuals at …

American Society Of Parasitologists Newsletter, V. 36, Nos. 1-2, Spring-Summer 2014, Scott Lyell Gardner

American Society of Parasitologists: Newsletter

Includes editor's note and contents, a report to the ASP by President Janovy, information about a new parasitology book, a report of the ASP Meeting in New Orleans, information about the transfer of the U.S. National Parasite Collection from the Agricultural Research Service to the Smithsonian Institution, and a list of credits and ASP Affiliates.

Estimation Of Breed-Specific Heterosis Effects For Birth, Weaning And Yearling Weight In Cattle, Lauren N. Schiermiester

Department of Animal Science: Dissertations, Theses, and Student Research

Genetic selection decisions are important components of improved beef production efficiency. Exploiting heterosis and breed complementarity can improve economically relevant traits and system efficiency. The objective of the current study was to estimate breed-specific heterosis for the seven largest beef breeds (according to registrations) for birth, weaning and yearling weight.

Birth, weaning and yearling weights were recorded for steers, heifers and bulls (n= 6,834) from Cycle VII and advanced generations of the Germ Plasm Evaluation project of the U.S. Meat Animal Research Center. Breeds represented in these data included: Angus, Hereford, Red Angus, Charolais, Gelbvieh, Simmental, Limousin and composite MARC …

The Mayfly Newsletter, Peter M. Grant

The Mayfly Newsletter

The Mayfly Newsletter is the official newsletter of the Permanent Committee of the International Conferences on Ephemeroptera.

A New Species Of Chiasmocleis (Microhylidae, Gastrophryninae) From The Atlantic Forest Of Espírito Santo State, Brazil, João Filipe Tonini, Maruicio Forlani, Rafael O. De Sá

Biology Faculty Publications

Among Neotropical microhylids, the genus Chiasmocleis is exceptionally diverse. Most species ofChiasmocleis were described in recent years based on external morphology, but recent studies using molecular data did not support the monophyly of the species groups clustered based on feet webbing. Furthermore, a phylogeographic study of C. lacrimae estimated high genetic divergence and low gene flow among populations across small geographic ranges. Increasing the molecular and geographic sampling, and incorporating morphological data, we identified new cryptic species. Herein, we used novel genetic and morphological data to describe a new species of Chiasmocleis.

Diet Alters Delayed Selfing, Inbreeding Depression, And Reproductive Senescence In A Freshwater Snail, Josh R. Auld, John F. Henkel

Biology Faculty Publications

No abstract provided.

Population Genetics Of Greater Sage-Grouse In Strawberry Valley, Utah, Paula S. Dunken

Theses and Dissertations

This study examined population genetics of greater sage-grouse (Centrocercus urophasianus) in Strawberry Valley, Utah located in the north-central part of the state. The Strawberry Valley population of sage-grouse experienced a severe population decline with estimates of abundance in 1998 less than 5% (~150 individuals) of similar estimates from the 1930s (>3,000 individuals). Given the population decline and reduced genetic diversity, recovery team partners translocated sage-grouse from four different populations into Strawberry Valley over 6 years (2003-2008). Translocations have been used as a strategy to increase both population size and genetic diversity in wildlife populations. We assessed whether genetic diversity …

Habitat Effects On Chick-A-Dee Call Complexity, Jacqueline Renee Lynch

Open Access Theses

Past studies on the communication systems of species in urban environments (such as Common Starlings (Sturnus vulgaris), nightingales (Luscinia megarhynchos Brehm), brown-headed cowbirds ( Molothrus ater), Southern brown tree frogs (Litoria ewingii )) have shown multiple ways that species change vocal signaling behavior to adjust to urban habitats (e.g. alarm calls and singing). This study further investigates the changes in signaling in relation to the chick-a-dee call of the Carolina chickadee (Poecile carolinensis). A secondary goal of this study was to compare both the amount of information and rate of calling across …

Across-Year Social Stability Shapes Network Structure In Wintering Migrant Sparrows, Daizaburo Shizuka, Alexis S. Chaine, Jennifer Anderson, Oscar Johnson, Inger Marie Laursen, Bruce E. Lyon

School of Biological Sciences: Faculty Publications

Migratory birds often form flocks on their wintering grounds, but important details of social structure such as the patterns of association between individuals are virtually unknown. We analysed networks of co-membership in short-term flocks for wintering golden-crowned sparrows (Zonotrichia atricapilla) across three years and discovered social complexity unsuspected for migratory songbirds. The population was consistently clustered into distinct social communities within a relatively small area (~ 7 ha). Birds returned to the same community across years, with mortality and recruitment leading to some degree of turnover in membership. These spatiotemporal patterns were explained by the combination of space …

Growing South Dakota (Summer 2014), College Of Agriculture &. Biological Sciences

Growing South Dakota (Publication of the College of Agriculture, Food and Environmental Sciences)

[Page] 2 Extending Knowledge, Changing Lives: SDSU Extension Marks 100-Year Milestone
[Page] 5 Preparing for SDSU Extension’s Future
[Page] 5 SDSU College of Agriculture & Biological Sciences Administrative Team [Page] 6 Summer College News
[Page] 7 Profiles In Leadership: Joseph Cassady; Local Leadership Important For Ag’s Future
[Page] 8 Advancing Agriculture: SDSU Precision Ag Program Evolves, Expands [Page] 9 On The Front Line: ADRDL Leads Important Effort For Animal Health Diagnostics
[Page] 10 4-H Philanthropy: Supporters Continue Campaign For New 4-H Exhibit Hall [Page] 11 Growing Global Citizens: AgBio Courses Offer International Learning Opportunities
[Page] 12 Guidance For Gardeners: Several …