Digital Commons Network^™

Assessment Of An Industrial Type Radiant Heating System For Drying Rough Rice, Anne Adhiambo Okeyo

Graduate Theses and Dissertations

Rough rice is normally harvested at moisture contents (MCs) higher than that for safe storage. The objective for this study was to investigate the effectiveness of scaled-up infrared (IR) heating followed by tempering steps to dry freshly-harvested rough rice. An industrial type, pilot scale, IR drying equipment, designed to convey rough rice on a vibrating conveyor belt was used in this study. The heating zone of the equipment had catalytic IR emitters powered by natural gas. Freshly-harvested rough rice of long-grain pureline (cv. Cheniere), long-grain hybrid (cv. 6XP 756) and medium-grain (cv. CL 271) cultivars at initial moisture contents (IMCs) …

Heat Stress Effects On Cotton During Reproductive Development And Subsequent Acclimation Responses, Toby Ryan Fitzsimons

Graduate Theses and Dissertations

High temperature stress is among the most difficult to control abiotic factors affecting crop yields in the Southern United States due to its wide regional influence. Cotton (Gossypium hirsutum L.) though a tropical plant in origin, it is sensitive to the effects of high temperature. This is of particular concern when the warmest temperatures coincide with the most sensitive developmental stage of flowering. Thus, the capacity to improve cotton’s ability to tolerate heat stress has been a significant focus for many decades. Therefore, this research was composed of several different components all designed to investigate heat stress effects. Using a …

Cover Crop Mixture Diversity And Function, Angela Florence

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

The objective of this study was to evaluate the effect of cover crop mixture diversity on cover crop function. Specifically, this study evaluated the effect of cover crop species and functional richness on aboveground biomass productivity, weed suppression, soil nutrient retention, soil microbial community characteristics, and performance stability. Twenty to forty cover crop treatments were replicated three to four times at eleven sites across southeastern Nebraska using a pool of eighteen species representing three cover crop species each from six pre-defined functional groups: cool-season grasses, cool-season legumes, cool-season brassicas, warm-season grasses, warm-season legumes, and warm-season broadleaves. Each species was planted …

Effect Of Potassium Deficiency On Uptake And Partitioning In The Cotton (Gossypium Hirsutum L.) Plant And Detection By A Crop Reflectance Sensor, Taylor Dayne Coomer

Graduate Theses and Dissertations

For cotton (Gossypium hirsutum L.) to grow and develop normally, plants need to uptake the necessary amount of nutrients and use those nutrients in a beneficial fashion. It is recognized that cotton needs a certain tissue concentration of ions to achieve and maintain growth rates (Siddiqi et al., 1987). One of the most essential and abundant nutrients in cotton is potassium (K), second only by mass to nitrogen (N) (Marschner, 1995; Oosterhuis et al., 2013). Potassium exists in the soil in four separate pools and moves through soil to roots mainly through diffusion (Rengel & Damon, 2008; Samal et al., …

Gene Expression And Physiological Analysis To Study Differences Between Oryza Sativa Cultivars Susceptible And Resistant To Chalky Grain Formation Subjected To High Nighttime Temperatures., Nicholas Lawson

Graduate Theses and Dissertations

Starch composition and grain quality of rice is greatly influenced by genotype and environmental factors. The detrimental effects of high nighttime temperatures on rice yield and quality has recently become apparent, with some of the warmest average nighttime temperatures being recorded in the past few years. One of the most notable effects of this stress, an increase in grain chalk formation, correlates with a decrease in quality. This effect varies greatly between cultivars as some show less temperature-sensitive quality reduction than others. The goal of this research is to elucidate fundamental changes that occur in developing plants and grains as …

Influence Of Fatty Acids And Their Derivatives On Aphid Resistance In Arabidopsis And Tomato, Jiamei Li

Graduate Theses and Dissertations

Fatty acid desaturases (FADs) are enzymes that act in the chloroplast or the endoplasmic reticulum (ER) to incorporate double bonds into the acyl chains of fatty acids, and recent evidence indicates that at least one of these enzymes, FAD7, also influences plant resistance to aphids. FAD7 is an enzyme in the chloroplast that is found throughout the plant kingdom and that desaturates 16- and 18-carbon fatty acids (FAs) with two double bonds (dienoic acids) to generate FAs with three double bonds (trienoic acids). In tomato (Solanum lycopersicum) and the model plant Arabidopsis thaliana, mutants with impaired FAD7 function are more …

Effects Of Delayed Drying And Storage Conditions On Milling, Color, And Viscosity Properties Of Rice, Kathryn Nicole Haydon

Graduate Theses and Dissertations

Head rice yields (HRYs), kernel discoloration, and functional properties are three hallmarks of rice quality, and can be impacted after harvest by storage conditions. This study evaluated impacts on rice quality due to controlled storage at moisture contents (MCs), temperatures, and storage durations that may be incurred during Mid-South rice farming practices. Three hybrid, long-grain cultivars, harvested in Arkansas in 2014 and 2015, were stored in rough rice form at 4 MCs (12.5%, 16%, 19%, and 21%), and 5 temperatures (10°C, 15°C, 20°C, 27°C, and 40°C), for 16 weeks, with samples taken every 2 weeks. After drying and milling, HRYs, …

Geospatial Analysis Of Droughts, Rice And Wheat Production, And Agrarian Vulnerability: A District-Level Study Of The Self-Calibrated Palmer Drought Severity Index In India, Aaron Michael Shew

Graduate Theses and Dissertations

Droughts have affected more people than any other natural disaster in the last century, causing billions in economic damages and millions of deaths. As the Sea Surface Temperatures (SST) have heated in the Indian Ocean, drought patterns across South Asia have changed; the Indian monsoon has become more volatile and less predictable. In this study, monthly self-calibrated Palmer Drought Severity Index (sc-PDSI) data for the time period between 1950 and 2009 were interpolated to India’s districts; then the data were analyzed for changes in frequency and severity. The data were further evaluated using Anselin’s Local Moran’s I Statistic to elicit …

Preserving Rice Quality: Fine-Mapping And Introgressing A Fissure Resistance Locus, Haley Marie Sater

Graduate Theses and Dissertations

Rice (Oryza sativa L.) kernel fissuring is a major concern of both rice producers and millers. Fissures are small cracks in rice kernels that increase breakage of kernels when milled, and decrease the value of processed rice. This study employed molecular gene tagging methods to fine-map a fissure resistance (FR) locus found in ‘Cybonnet’, a semidwarf tropical japonica cultivar, as well as transfer this trait to rice genotypes of taller, non-semidwarf plant height that are better adapted to some rice production systems. Three QTLs for FR were previously reported; the FR locus with strongest effect resides near the semidwarf sd-1 …

Growth And Productivity Of Irrigated Rice (Oryza Sativa L.) For A Tropical High Altitude Environment In Rwanda, Elie Rene Gasore

Graduate Theses and Dissertations

Yield components, grain yield, biomass and plant N accumulation, and N fertilizer responses of irrigated rice (Oryza sativa, L.) were evaluated for a tropical inland valley environment in the high altitudes in Rwanda. Effects were measured for nitrogen (N) fertilizer rate (0, 60, 90,120,150,180 kg N ha-1), season, growth stage and cultivar of different subspecies and plant types during 2012 dry season (DS) and 2013 wet season (WS) at Cyili Rice Research Farm (1380 m above sea level). Variations in irradiance (17.2± 0.32 MJ m-2 day-1 in DS and 9.4 ± 0.66 MJ m-2 day-1in WS) were linked to seasonal …

Managing Drought Stress In California Agricultural Systems, Gregory D. Brittain Jr.

Doctor of Plant Health Program: Dissertations and Student Research

California is currently facing a historic drought, and this has led many farmers in the state to severely cut back on irrigation. Optimal use of water for irrigation requires a comprehensive understanding of how plants respond physiologically to water stress (Chapter 1). By monitoring water requirements in crops and managing irrigation to meet those requirements, growers can significantly reduce water use (Chapter 2). This can be done through improving application efficiency of irrigation technology as well as increasing the water use efficiency of the crops themselves. Deficit irrigation practices can be used to manipulate the physiology of water use in …

A Vision For Extension: Case Studies On Managing Extreme Weather Challenges In Corn, Anthony J. Mcmechan

Doctor of Plant Health Program: Dissertations and Student Research

Global demand for corn is projected to rise in the coming decades to meet the food and fuel requirements of an increasing human population. Technological innovations have significantly improved corn yields over the past few decades; however, corn production is continually limited by unfavorable weather conditions. Extreme weather events put pressure on producers, adjustors, and consultants to make quick management decisions to maintain the highest return on their investment. Proper management decisions require an understanding of plant response and practical ways of applying this knowledge under real world conditions.

The following document was written after completing a six-month internship at …

Biology, Gene Flow, And Management Of Glyphosate-Resistant Common Waterhemp (Amaranthus Rudis Sauer) In Nebraska, Debalin Sarangi

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Common waterhemp is the most troublesome weed in the midwestern United States. Growers from Nebraska reported failure to control common waterhemp following sequential applications of glyphosate in glyphosate-tolerant corn and soybean, which led to moderate to severe yield loss; justifying the need to confirm resistance and study the biology and management of common waterhemp. The objectives of this research were: 1) to confirm the presence of glyphosate-resistant (GR) common waterhemp biotypes in Nebraska and to evaluate their sensitivity to herbicides belonging to alternative sites-of-action; 2) to evaluate the response of common waterhemp to water stress; 3) to quantify pollen-mediated gene …

Pengaruh Pemberian Gibberellin Dan Sitokinin Pada Konsentrasi Yang Berbeda Terhadap Pertumbuhan Dan Hasil Gandum (Triticum Aestivum L.) Di Dataran Medium Jatinangor, Fiky Yulianto Wicaksono, Tati Nurmala, Aep Wawan Irwan, Annisa Sarah Utami Putri

Jurnal Kultivasi

Penelitian ini bertujuan untuk mengetahui pertumbuhan dan hasil tanaman gandum yang maksimum di dataran medium melalui pemberian giberelin dan sitokinin dengan konsentrasi yang berbeda. Percobaan dilakukan sejak Maret hingga Agustus 2015 di Kebun Percobaan Fakultas Pertanian Universitas Padja-djaran, Jatinangor, dengan ketinggian tempat yaitu ± 750 m di atas permukaan laut.Rancangan percobaan adalah Rancangan Acak Kelompok dengan rancangan perlakuan faktorial. Perla-kuan terdiri dari dua faktor, masing-masing terdiri dari tiga taraf,yang diulang tiga kali. Faktor pertama adalah konsentrasi giberelin, terdiri dari taraf 150 ppm, 250 ppm, dan 350 ppm. Faktor kedua adalah konsentrasi sitokinin, terdiri dari taraf 20, 40, dan 60 ppm. …

Information Thermodynamics Of Cytosine Dna Methylation, Robersy Sanchez Rodriguez, Sally Ann Mackenzie

Department of Agronomy and Horticulture: Faculty Publications

Cytosine DNA methylation (CDM) is a stable epigenetic modification to the genome and a widespread regulatory process in living organisms that involves multicomponent molecular machines. Genome-wide cytosine methylation patterning participates in the epigenetic reprogramming of a cell, suggesting that the biological information contained within methylation positions may be amenable to decoding. Adaptation to a new cellular or organismal environment also implies the potential for genome-wide redistribution of CDM changes that will ensure the stability of DNA molecules. This raises the question of whether or not we would be able to sort out the regulatory methylation signals from the CDM background …

Ws-2 Introgression In A Proportion Of Arabidopsis Thaliana Col-0 Stock Seed Produces Specific Phenotypes And Highlights The Importance Of Routine Genetic Verification, Mon-Ray Shao, Vikas Shedge, Hardik Kundariya, Fredric R. Lehle, Sally Ann Mackenzie

Department of Agronomy and Horticulture: Faculty Publications

Arabidopsis thaliana is an important model organism with a robust network of resources that has been of enormous value to the plant science research community. The use of isogenic material as a reference point or control is critical for many types of experiments in plant molecular biology and genetics. Recently, we noticed that some seed from a common source of the widely used Columbia-0 (Col-0) strain gave rise to plants showing features atypical for this strain. Whole-genome DNA-sequencing and allelespecific PCR assays confirmed that the abnormal individuals contain multiple introgressions from the ecotype Wassilewskija-2 (Ws-2), as described below. This …

Student-Conducted Farmer Video Interviews, Jenn K. Simons, Justin Van Wart, Charles Francis, Kristyn Harms

Department of Agronomy and Horticulture: Faculty Publications

High school agricultural education teachers have expressed concern about the lack of easily accessible educational materials dealing with contemporary topics in sustainable agriculture. There are numerous textbooks and monographs available for farmers and students at the college level, including the highly practical resources available from the Sustainable Agriculture Research and Education (SARE) book series on soil fertility (Magdoff and van Es, 2010), cover crops (Bowman et al., 2007) and building a farm business (DiGiacomo et al., 2003), among others. Although these are full of color photos and easily accessible graphs and tables, they are still in the print media category. …

Winter Cover Crops Impact On The Distribution Of Soil Inorganic Nitrogen And Subsequent Crop Uptake And Yield Following Fall Applied Anhydrous Ammonium, William Travis Deppe

Theses and Dissertations

The pairing of cover crops with spring application of nitrogen has shown improved nitrogen efficiency in corn production systems. However, studies have shown that only 50% of central Illinois farmers practice spring application of nitrogen. Furthermore, the literature demonstrates that in years with above average rainfall, fall applied N management systems are more susceptible to N loading relative to spring systems. Therefore, the objective of this research was to determine the efficacy of winter cover crops to impact the distribution of soil inorganic N following fall applied anhydrous ammonium. The experimental site is located at the Illinois State University Research …

Corn Era Hybrid Response To Nitrogen Fertilization, Krishna P. Woli, Matthew J. Boyer, Roger Wesley Elmore, John E. Sawyer, Lori J. Abendroth, Daniel W. Barker

Department of Agronomy and Horticulture: Faculty Publications

Corn (Zea mays L.) N use is of continued interest due to agronomic performance and environmental issues. This 2-yr study evaluated era hybrid response to fertilizer nitrogen (FN) rate in a factorial arrangement of one popular hybrid per five decades (1960–2000 eras) and five N rates (0–224 kg N ha^–1). An additional hybrid per era was grown at 168 kg N ha^–1. Hybrid productivity and nitrogen use efficiency (NUE) increased across the eras, but not between the 1980 and 1990 eras. Grain yield (GY) increased 65% and total plant biomass 43%, however, total plant nitrogen …

Igrow Corn: Best Management Practices, David E. Clay, Gregg G. Carlson, Sharon A. Clay, Emmanuel Byamukama

Agronomy, Horticulture, and Plant Science Books

No abstract provided.

Growing Potato Profitably For Organic Dry Matter Production In Western Nebraska, Alexander Pavlista, Jessica J. Groskopf

Panhandle Research and Extension Center

Growing potato conventionally for dehydration is not economically feasible. The key cost would be seed under organic farming. The objective is to identify seed-piece sizes and spacings producing a profitable return for potato dehydration in western Nebraska. Atlantic potatoes were grown under dryland conditions using organic practices. Rain was 205, 270, and 360 mm in 2013, 2014, and 2015. Seed-pieces were hand-cut into five weights from 42.5 to 85.0 g and planted in five spacings from 15.2 to 45.7 cm. Seeding rates were 1.02 to 6.1 Mg/ha. Yield was highest at the spacing of 15.2 cm (16.1 Mg/ha) and decreased …

Biochar Reduced Nitrous Oxide And Carbon Dioxide Emissions From Soil With Different Water And Temperature Cycles, Jiyul Chang, David E. Clay, Sharon A. Clay, Rajesh Chintala, Janet M. Miller, Thomas Schumacher

Agronomy, Horticulture and Plant Science Faculty Publications

Interactions among biochar, respiration, nitrification, and soils can result in biochar increasing, decreasing, or not impacting greenhouse gas (GHG) emissions. This experiment determined the impact of water-filled porosity (WFP) and corn (Zea mays L.) stover biochar on CO₂ and N₂O emissions in May (spring) and August (summer). The May experiment contained two N rates [0 and 224 kg Ca(NO₃)₂–N ha^–1], whereas the August had three N rates [0, 224 kg Ca(NO₃)₂–N ha^–1, and 224 kg (NH₄)₂SO₄–N ha^{–1 …}

Mapping Qtls And Association Of Differentially Expressed Gene Transcripts For Multiple Agronomic Traits Under Different Nitrogen Levels In Sorghum, Malleswari Gelli, Sharon E. Mitchell, Kan Liu, Thomas E. Clemente, Donald P. Weeks, Chi Zhang, David R. Holding, Ismail M. Dweikat

Department of Agronomy and Horticulture: Faculty Publications

Background: Sorghum is an important C₄ crop which relies on applied Nitrogen fertilizers (N) for optimal yields, of which substantial amounts are lost into the atmosphere. Understanding the genetic variation of sorghum in response to limited nitrogen supply is important for elucidating the underlying genetic mechanisms of nitrogen utilization.

Results: A bi-parental mapping population consisting of 131 recombinant inbred lines (RILs) was used to map quantitative trait loci (QTLs) influencing different agronomic traits evaluated under normal N (100 kg.ha⁻¹ fertilizer) and low N (0 kg.ha⁻¹ fertilizer) conditions. A linkage map spanning 1614 cM was developed …

Proteomic Profiling Of Maize Opaque Endosperm Mutants Reveals Selective Accumulation Of Lysine-Enriched Proteins, Kyla J. Morton, Shangang Jia, Chi Zhang, David R. Holding

Department of Agronomy and Horticulture: Faculty Publications

Reduced prolamin (zein) accumulation and defective endoplasmic reticulum (ER) body formation occurs in maize opaque endosperm mutants opaque2 (o2), floury2 (fl2), defective endosperm*B30 (DeB30), and Mucronate (Mc), whereas other opaque mutants such as opaque1 (o1) and floury1 (fl1) are normal in these regards. This suggests that other factors contribute to kernel texture. A liquid chromatography approach coupled with tandem mass spectrometry (LC-MS/MS) proteomics was used to compare non-zein proteins of nearly isogenic opaque endosperm mutants. In total, 2762 proteins were identified that were enriched for biological processes such …

Simulating Long-Term Impacts Of Cover Crops And Climate Change On Crop Production And Environmental Outcomes In The Midwestern United States, Andrea D. Basche, Sotririos V. Archontoulis, Thomas C. Kaspar, Dan B. Jaynes, Timothy B. Parkin, Fernando E. Miguez

Department of Agronomy and Horticulture: Faculty Publications

It is critical to evaluate conservation practices that protect soil and water resources from climate change in the Midwestern United States, a region that produces one-quarter of the world’s soybeans and one-third of the world’s maize. An over-winter cover crop in a maize–soybean rotation offers multiple potential benefits that can reduce the impacts of higher temperatures and more variable rainfall; some of the anticipated changes for the Midwest. In this experiment we used the Agricultural Production Systems sIMulator (APSIM) to understand how winter rye cover crops impact crop production and environmental outcomes, given future climate change. We first tested APSIM …

Decipher The Molecular Response Of Plant Single Cell Types To Environmental Stresses, Mehrnoush Nourbakhsh-Rey, Marc Libault

Department of Agronomy and Horticulture: Faculty Publications

The analysis of the molecular response of entire plants or organs to environmental stresses suffers from the cellular complexity of the samples used. Specifically, this cellular complexity masks cell-specific responses to environmental stresses and logically leads to the dilution of the molecular changes occurring in each cell type composing the tissue/organ/plant in response to the stress.Therefore, to generate a more accurate picture of these responses, scientists are focusing on plant single cell type approaches. Several cell types are now considered as models such as the pollen, the trichomes, the cotton fiber, various root cell types including the root hair cell, …

Organic Struggle: The Movement For Sustainable Agriculture In The United States [Book Review], Charles A. Francis

Department of Agronomy and Horticulture: Faculty Publications

Organic Struggle chronicles the challenges encountered by innovators in a growing segment of the U.S. food production and marketing system. Practiced for millennia by farmers before the introduction of chemical fertilizers and pesticides, and first developed more formally in Europe, organic farming practices began to gain prominence in the United States only in the 1950s. Far more than a system for producing food, this strategy has become a focus for those supporting healthy and pesticide-free products, for some who embrace the organic system as a food movement, and by many who disagree with the current domination of the country’s food …

Draft Genome Sequence Of Erwinia Tracheiphila, An Economically Important Bacterial Pathogen Of Cucurbits, Lori R. Shapiro, Erin D. Scully, Dana Roberts, Timothy J. Straub, Scott M. Geib, Jihye Park, Andrew G. Stephenson, Erika Salaau Rojas, Quin Liu, Gwyn Beattie, Mark Gleason, Consuelo M. De Moraes, Mark C. Mescher, Shelby G. Fleischer, Roberto Kolter, Naomi Pierce, Olga Zhaxybayeva

Department of Agronomy and Horticulture: Faculty Publications

Erwinia tracheiphila is one of the most economically important pathogens of cucumbers, melons, squashes, pumpkins, and gourds in the northeastern and midwestern United States, yet its molecular pathology remains uninvestigated. Here, we report the first draft genome sequence of an E. tracheiphila strain isolated from an infected wild gourd (Cucurbita pepo subsp. texana) plant. The genome assembly consists of 7 contigs and includes a putative plasmid and at least 20 phage and prophage elements.

Muts Homolog1 Silencing Mediates Orf220 Substoichiometric Shifting And Causes Male Sterility In Brassica Juncea, Na Zhao, Xinyue Xu, Yashitola Wamboldt, Sally Ann Mackenzie, Xiaodong Yang, Zhongyuan Hu, Jinghua Yang, Mingfang Zhang

Department of Agronomy and Horticulture: Faculty Publications

Cytoplasmic male sterility (CMS) has consistently been associated with the expression of mitochondrial open reading frames (ORFs) that arise from genomic rearrangements. Spontaneous fertility reversion in CMS has been observed in several cases, but a clear understanding of fertility reversion controlled by nuclear genetic influences has been lacking. Here, we identified spontaneous fertile revertant lines for Brassica juncea CMS cytoplasm in which the mitochondrial genome has undergone substoichiometric shifting (SSS) to suppress ORF220 copy number. We placed ORF220, with or without a mitochondrial targeting presequence, under the control of the CaMV35S and AP3 promoters in Arabidopsis to confirm that ORF220 …

Correlating Bulk Density (With Dockage) And Test Weight (Without Dockage) For Wheat Samples, Rumela Bhadra, Mark E. Casada, Josephine M. Boac, Aaron P. Turner, Sidney A. Thompson, Michael D. Montross, Ronaldo G. Maghirang, Samuel G. Mcneill

Biosystems and Agricultural Engineering Faculty Publications

In grain bins, the compaction of stored grain is caused by the overbearing pressure of the bulk material in the bin. To predict the amount of grain in the bin, compaction values must be determined based on the average bulk density (BD) of the stored material. However, BD is determined following the Federal Grain Inspection Service (FGIS) guidelines for measuring test weight (TW), which require that dockage be removed prior to measuring wheat TW. Thus, this creates a problem for predicting grain compaction and conducting inventory studies, because the average BD of the grain in a bin for these calculations …