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An Efficient And Improved Method For Virus-Induced Gene Silencing In Sorghum, Dharmendra Kumar Singh, Hee-Kyung Lee, Ismail M. Dweikat, Kirankumar S. Mysore

Department of Agronomy and Horticulture: Faculty Publications

Background: Although the draft genome of sorghum is available, the understanding of gene function is limited due to the lack of extensive mutant resources. Virus-induced gene silencing (VIGS) is an alternative to mutant resources to study gene function. This study reports an improved and efficient method for Brome mosaic virus (BMV)-based VIGS in sorghum.

Methods: Sorghum plants were rub-inoculated with sap prepared by grinding 2 g of infected Nicotiana benthamiana leaf in 1 ml 10 mM potassium phosphate buffer (pH 6.8) and 100 mg of carborundum abrasive. The sap was rubbed on two to three top leaves of sorghum. Inoculated …

Mulch And Groundcover Effects On Soil Temperature And Moisture, Surface Reflectance, Grapevine Water Potential, And Vineyard Weed Management, Christina M. Bavougian, Paul E. Read

Department of Agronomy and Horticulture: Faculty Publications

The objectives of this research were to identify alternatives to glyphosate for intra- row (under-trellis) vineyard floor management and to evaluate the potential for intra- row and inter-row (alleyway) groundcovers to reduce vegetative vigor of `Marquette' grapevines (Vitis spp.) in a southeast Nebraska vineyard. The experiment was a randomized factorial design with five intra-row treatments (crushed glass mulch [CG], distillers' grain mulch [DG], creeping red fescue [CRF], non-sprayed control [NSC], and glyphosate [GLY]) and three inter-row treatments (creeping red fescue [CRF], Kentucky bluegrass [KB], and resident vegetation [RV]). Treatments were established in 2010-2011 and measurements were conducted during 2012 …

Empirical Comparisons Of Different Statistical Models To Identify And Validate Kernel Row Number-Associated Variants From Structured Multi-Parent Mapping Populations Of Maize, Jinliang Yang, Cheng-Ting Yeh, Raghuprakash Kastoori Ramamurthy, Xinshuai Qi, Rohan L. Fernando, Jack C. M. Dekkers, Dorian J. Garrick, Dan Nettleton, Patrick Schnable

Department of Agronomy and Horticulture: Faculty Publications

Advances in next generation sequencing technologies and statistical approaches enable genomewide dissection of phenotypic traits via genome-wide association studies (GWAS). Although multiple statistical approaches for conducting GWAS are available, the power and cross-validation rates of many approaches have been mostly tested using simulated data. Empirical comparisons of single variant (SV) and multi-variant (MV) GWAS approaches have not been conducted to test if a single approach or a combination of SV and MV is effective, through identification and cross-validation of trait-associated loci. In this study, kernel row number (KRN) data were collected from a set of 6,230 entries derived from the …

Quantifying Variance Across Spatial Scales As Part Of Fire Regime Classifications, Rheinhardt Scholtz, Samuel D. Fuhlendorf, Sherry A. Leis, Joshua J. Picotte, Dirac L. Twidwell Jr

Department of Agronomy and Horticulture: Faculty Publications

The emergence of large-scale fire classifications and products informed by remote sensing data has enabled opportunities to include variability or heterogeneity as part of modern fire regime classifications. Currently, basic fire metrics such as mean fire return intervals are calculated without considering spatial variance in a management context. Fire return intervals are also only applicable at a particular grain size (defined as the spatial unit of interest) even though they are typically applied homogeneously. In this study, we utilized a 29-yr fire occurrence database to show how spatial variance changes with respect to grain as postulated by Wiens (1989) when …

Phosphate Deficiency Negatively Affects Early Steps Of The Symbiosis Between Common Bean And Rhizobia, Mariel C. Isidra-Arellano, Maria Del Rocio Reyero-Saavedra, Maria Del Socorro Sanchez-Correa, Lise Pingault, Sidharth Sen, Trupti Joshi, Lourdes Girard, Norma A. Castro-Guerrero, David G. Mendoza-Cozatl, Marc Libault, Oswaldo Valdes-Lopez

Department of Agronomy and Horticulture: Faculty Publications

Phosphate (Pi) deficiency reduces nodule formation and development in different legume species including common bean. Despite significant progress in the understanding of the genetic responses underlying the adaptation of nodules to Pi deficiency, it is still unclear whether this nutritional deficiency interferes with the molecular dialogue between legumes and rhizobia. If so, what part of the molecular dialogue is impaired? In this study, we provide evidence demonstrating that Pi deficiency negatively affects critical early molecular and physiological responses that are required for a successful symbiosis between common bean and rhizobia. We demonstrated that the infection thread formation and the expression …

Genetic Architecture Of Common Bunt Resistance In Winter Wheat Using Genome-Wide Association Study, Amira M. I. Mourad, Ahmed Sallam, Vikas Belamkar, Ezzat Mahdy, Bahy Bakheit, Atif Abo El-Wafaa, P. Stephen Baenziger

Department of Agronomy and Horticulture: Faculty Publications

Background: Common bunt (caused by Tilletia caries and T. foetida) has been considered as a major disease in wheat (Triticum aestivum) following rust (Puccinia spp.) in the Near East and is economically important in the Great Plains, USA. Despite the fact that it can be easily controlled using seed treatment with fungicides, fungicides often cannot or may not be used in organic and low-input fields. Planting common bunt resistant genotypes is an alternative.

Results: To identify resistance genes for Nebraska common bunt race, the global set of differential lines were inoculated. Nine differential lines carrying nine …

Improving Fertilizer Recommendations For Nepalese Farmers With The Help Of Soil-Testing Mobile Van, Sunil Pandey, Netra Prasad Bhatta, Prakash Paudel, Rajan Pariyar, Kiran Hari Maskey, Janardan Khadka, Tuk Bahadur Thapa, Balaram Rijal, Dinesh Panday

Department of Agronomy and Horticulture: Faculty Publications

Smallholder farmers dominate agriculture in Nepal. These farmers have poor knowledge about agriculture and lack of support for soil management and integrated plant-nutrient systems. Focusing on the importance and need for soil-fertility management, a soil-testing mobile van program has recently been introduced in Nepal by Soil Management Directorate, Hariharbhawan. With the introduction of the mobile lab, famers can get their soil tested for nutrient deficiencies and fertilizer requirements at their doorsteps. Using mobile lab, spatial distributions of chemical properties, including pH, organic matter (OM), total nitrogen (N), available phosphorus (as P₂O₅), and available potassium (as K …

Influence Of Harvest Date On Seed Yield And Quality In Forage Kochia, Cody F. Creech, Blair L. Waldron, Corey V. Ransom, Dale R. Zobell, Joseph Earl Creech

Department of Agronomy and Horticulture: Faculty Publications

Forage kochia (Bassia prostrata) is used for rangeland reclamation and livestock and wildlife forage, but limited research has been conducted on its seed production. Therefore, this research evaluated the effect of harvest date on seed weight, germination, and seed yield of forage kochia subspecies virescens and grisea. Seed was harvested from individual plants for 3 years during October, November, and December. October harvest had the lightest 100-seed weights, with the November harvest slightly heavier than December, for most accessions. Cultivar Snowstorm and breeding line Sahsel, both subsp. grisea, had the greatest 100-seed weights in November, 155 …

Identification Of Quantitative Trait Loci Conferring Resistance To Tan Spot In A Biparental Population Derived From Two Nebraska Hard Red Winter Wheat Cultivars, Gayan K. Kariyawasam, Waseem Hussain, Amanda Easterly, Mary Guttieri, Vikas Belamkar, Jesse Poland, Jorge Venegas, Stephen Baenziger, Francois Marais, Jack B. Rasmussen, Zhaohui Liu

Department of Agronomy and Horticulture: Faculty Publications

Tan spot, caused by Pyrenophora triticirepentis (Ptr), is a destructive foliar disease in all types of cultivated wheat worldwide. Genetics of tan spot resistance in wheat is complex, involving insensitivity to fungal-produced necrotrophic effectors (NEs), major resistance genes, and quantitative trait loci (QTL) conferring race-nonspecific and race-specific resistance. The Nebraska hard red winter wheat (HRWW) cultivar ‘Wesley’ is insensitive to Ptr ToxA and highly resistant to multiple Ptr races, but the genetics of resistance in this cultivar is unknown. In this study, we used a recombinant inbred line (RIL) population derived from a cross between Wesley and another …

Lignocellulosic-Based Bioenergy And Water Quality Parameters: A Review, Bharat Sharma Acharya, Humberto Blanco-Canqui

Department of Agronomy and Horticulture: Faculty Publications

High rates of crop residue removal as biofuel feedstocks could increase losses of nonpoint source pollutants, negatively affecting water quality. An alternative to residue removal can be growing dedicated bioenergy crops such as warm season grasses (WSGs) and short-rotation woody crops (SRWCs). Yet, our understanding of the implications of growing dedicated bioenergy crops on water quality is limited. Thus, we (i) synthesized and compared the impacts of crop residue removal, WSGs, and SRWCs on water quality parameters (i.e., sediment and nutrient runoff, and nutrient leaching) and (ii) identified research gaps for growing dedicated energy crops. Literature indicates that residue removal …

Epigenomic Plasticity Of Arabidopsis Msh1 Mutants Under Prolonged Cold Stress, Sunil Kumar Kenchanmane Raju, Mon-Ray Shao, Yashitola Wamboldt, Sally A. Mackenzie

Department of Agronomy and Horticulture: Faculty Publications

Dynamic transcriptional and epigenetic changes enable rapid adaptive benefit to environmental fluctuations. However, the underlying mechanisms and the extent to which this occurs are not well known. MutS Homolog 1 (MSH1) mutants cause heritable developmental phenotypes accompanied by modulation of defense, phytohormone, stress‐response, and circadian rhythm genes, as well as heritable changes in DNA methylation patterns. Consistent with gene expression changes, msh1 mutants display enhanced tolerance for abiotic stress including drought and salt stress, while showing increased susceptibility to freezing temperatures. Despite changes in defense and biotic stress‐response genes, msh1 mutants showed increasing susceptibility to the bacterial pathogen Pseudomonas syringae. …

Environmental Mycobacterium Avium Subsp. Paratuberculosis Hosted By Free-Living Amoebea, Ascel Samba-Louaka, Etienne Robino, Thierry Cochard, Maxime Branger, Vincent Delafont, Willy Aucher, Wilfrid Wambeke, John Bannantine, Franck Biet, Yann Héchard

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Mycobacterium avium subsp. paratuberculosis is responsible for paratuberculosis in animals. This disease, leading to an inflammation of the gastrointestinal tract, has a high impact on animal health and an important economic burden. The environmental life cycle of M. avium subsp. paratuberculosis is poorly understood and several studies suggest that free-living amoebae (FLA) might be a potential environmental host. FLA are protozoa found in water and soil that are described as reservoirs of pathogenic and non-pathogenic bacteria in the environment. Indeed, bacteria able to survive within these amoebae would survive phagocytosis from immune cells. In this study, we assessed the in …

Can Bangladesh Produce Enough Cereals To Meet Future Demand?, J. Timsina, J. Wolf, N. Guilpart, L G. J. Van Bussel, P. Grassini, J. Van Wart, A. Hossain, H. Rashid, S. Islam, M. K. Van Ittersum

Department of Agronomy and Horticulture: Faculty Publications

Bangladesh faces huge challenges in achieving food security due to its high population, diet changes, and limited room for expanding cropland and cropping intensity. The objective of this study is to assess the degree to which Bangladesh can be self-sufficient in terms of domestic maize, rice and wheat production by the years 2030 and 2050 by closing the existing gap (Yg) between yield potential (Yp) and actual farm yield (Ya), accounting for possible changes in cropland area. Yield potential and yield gaps were calculated for the three crops using well-validated crop models and site-specific weather,management and soil data, and upscaled …

Can Increasing Grass-Fungal Endophyte Symbiotic Diversity Enhance Grassland Ecosystem Functioning?, Mahtaab Bagherzadeh

Theses and Dissertations--Plant and Soil Sciences

The relationship between biodiversity and ecosystem functioning is important in maintaining agroecosystem sustainability. Plant-microbe symbioses, such as exists between the grass tall fescue (Schedonorus arundinaceum) and the asexual fungal endophyte Epichloë coenophiala, can be utilized to enhance agroecosystem functions, such as herbivore resistance. “Novel” E. coenophiala strains that vary in the production of mammal- and insect-toxic compounds have been identified, inserted into tall fescue cultivars, and are planted in pastures globally. Novel fungal endophyte-tall fescue associations may have divergent ecosystem function effects. This study assessed effects of different fescue-endophyte symbiotic combinations on pasture ecosystem function, including aboveground …

Engineering Zinc Oxide Nanoparticles To Be Used As Nanofertilizers, Zeinah Elhaj Baddar

Theses and Dissertations--Plant and Soil Sciences

Zinc deficient soils, or soils with low Zn bioavailability, are widespread, which exacerbates Zn deficiency in human as crops grown on these soils have low Zn content. Often crop yields are also compromised. Fertilizers based on soluble Zn salts often have limited efficacy in such soils. In this research, we evaluate the performance of polymer coated and bare ZnO nanoparticles (NPs) in an attempt to overcome limitations of soluble Zn salts in alkaline soils. We first synthesized 20-30 nm bare ZnO NPs with different surface chemistries to impart colloidal stability to the particles. Bare ZnO were treated in phosphate solution …

Characterizing Nitrogen Loss And Greenhouse Gas Flux Across An Intensification Gradient In Diversified Vegetable Systems, Debendra Shrestha

Theses and Dissertations--Plant and Soil Sciences

The area of vegetable production is growing rapidly world-wide, as are efforts to increase production on existing lands in these labor- and input-intensive systems. Yet information on nutrient losses, greenhouse gas emissions, and input efficiency is lacking. Sustainable intensification of these systems requires knowing how to optimize nutrient and water inputs to improve yields while minimizing negative environmental consequences. This work characterizes soil nitrogen (N) dynamics, nitrate (NO₃¯) leaching, greenhouse gas emissions, and crop yield in five diversified vegetable systems spanning a gradient of intensification that is characterized by inputs, tillage and rotational fallow periods. The study systems …

A Mycobacterium Avium Subsp. Paratuberculosis Rela Deletion Mutant And A 35 Kda Major Membrane Protein Elicit Development Of Cytotoxic T Lymphocytes With Ability To Kill Intracellular Bacteria, Gaber S. Abdellrazeq, Mahmoud M. Elnaggar, J. P. Bannantine, Kun Park, Cleverson D. Souza, Brian Backer, Victoria Hulubei, Lindsay M. Fry, Samy A. Khaliel, Helmy A. Torky, David A. Schneider, William C. Davis

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Efforts to develop live attenuated vaccines against Mycobacterium avium subspecies paratuberculosis (Map), using indirect methods to screen Map deletion mutants for potential efficacy, have not been successful. A reduction in the capacity to survive in macrophages has not predicted the ability of mutants to survive in vivo. Previous studies for screening of three deletion mutants in cattle and goats revealed one mutant, with a deletion in relA (ΔMap/relA), could not establish a persistent infection. Further studies, using antigen presenting cells (APC), blood dendritic cells and monocyte derived DC, pulsed with ΔMap/relA or a 35 kDa Map membrane protein (MMP) revealed …

Framing Contemporary U.S. Wild Horse And Burro Management Processes In A Dynamic Ecological, Sociological, And Political Environment, J. Derek Scasta, Jacob D. Hennig, Jeffrey L. Beck

Human–Wildlife Interactions

The Wild Free-Roaming Horses and Burros Act (WFRHBA) of 1971 established all “unbranded or unclaimed” equids on U.S. public lands as “living symbols of the historic and pioneer spirit of the West.” Today, >72,000 feral horses (Equus ferus caballus) and burros (E . asinus ; WHB) live on western U.S. public rangelands. The number of WHBs exceeds the Bureau of Land Management’s maximum Appropriate Management Level (AML) of 26,715 by a factor of approximately 2.7 and has nearly doubled from 2007–2015. The AML was set to balance WHB numbers with rangeland health and support other uses such as wildlife habitat …

Spatial Ecology Observations From Feral Horses Equipped With Global Positioning System Transmitters, Jacob D. Hennig, Jeffrey L. Beck, J. Derek Scasta

Human–Wildlife Interactions

Our understanding of the spatial ecology of feral horses (Equus ferus caballus ) and burros (E . asinus ) in the United States is limited. Robust location data are needed to better understand the permeability of Bureau of Land Management Herd Management Area boundaries, relative to feral horse movement patterns and home ranges. To increase our understanding of feral horse movement, in February to March 2017, we deployed global positioning system (GPS) collars on 14 females ≥5 years old that were captured in the Adobe Town Herd Management Area (ATHMA) of southcentral Wyoming, USA. Herein, we report initial results from …

The Three Creeks Allotment Consolidation: Changing Western Federal Grazing Paradigms, Taylor Payne

Human–Wildlife Interactions

The federal government owns approximately 47% of all land in the western United States. In the state of Utah, about 64% of the land base is managed by the federal Bureau of Land Management (BLM) and the U.S. Forest Service (USFS). The government has historically issued permits to owners of private lands to allow the owners to graze their livestock on public lands. The permits (allotments) are generally of 10-year duration and allow for an annual season of use. In some cases, continued and repeated historical annual grazing practices may not be ideal for permit holders and their communities nor …

Cc-Type Glutaredoxins Mediate Plant Response And Signaling Under Nitrate Starvation In Arabidopsis, Ji-Yul Jung, Ji Hoon Ahn, Daniel P. Schachtman

Department of Agronomy and Horticulture: Faculty Publications

Background: Nitrogen is an essential nutrient in plants. Despite the importance of nitrogen for plant growth and agricultural productivity, signal transduction pathways in response to nitrate starvation have not been fully elucidated in plants.

Results: Gene expression analysis and ectopic expression were used to discover that many CC-type glutaredoxins (ROXYs) are differentially expressed in response to nitrate deprivation. A gain-of-function approach showed that ROXYs may play a role in nutrient sensing through the regulation of chlorophyll content, root hair growth, and transcription of nitrate-related genes such as NRT2.1 under low or high nitrate conditions. Reactive oxygen species (ROS) …

Risks And Opportunities Of Gm Crops: Bt Maize Example, Andrea K. Carzoli, Siddique I. Aboobucker, Leah L. Sandall, Thomas T. Lubberstedt, Walter P. Suza

Department of Agronomy and Horticulture: Faculty Publications

The anticipated world population growth emphasizes a need to produce more food on less land. Cutting-edge technologies, including genetic engineering, can help to develop improved crop varieties and protect natural resources. In spite of the potential for genetically-modified (GM) crops to make crop production more efficient, they remain a polarizing issue due to safety concerns. This paper provides an overview of the risk assessment process. The safety of Bacillus thuringiensis (Bt) proteins is used as an example for how risk assessment is applied to GM crops. Risks associated with GM crops have proven to be low to non-existent. Developing countries …

Agri 115: Biotechnology – Food, Health And Environment, A Peer Review Of Teaching Project Benchmark Portfolio, Leah Sandall

UNL Faculty Course Portfolios

No abstract provided.

Zoning And Complementary Incentives To Protect Farmland: A Case For Missoula County, Kaitlin Mccafferty

Graduate Student Theses, Dissertations, & Professional Papers

Urban sprawl reflects an inefficient use of land that diminishes both rural landscapes and quality of life turning farms, ranches and open space into siloed suburban communities. This results in less walkable cities with more traffic and air pollution, among other negative consequences. Farmland constitutes a particularly important resource that often faces degradation or loss due to sprawl. Higher quality agricultural soils are particularly desirable for development because they are flat and well-drained. Farmland is also important for urban communities concerning food security, environmental health, and economic well being. As American cities continue to grow, farmland around urban areas has …

Arthropod Diets In Chihuahuan Desert Snakes, Victor Manuel Parga

Open Access Theses & Dissertations

Over the past century, studies in herpetology regarding snake diets have been commonly focused on those species that feed or specialize in vertebrate prey items. For those that feed primarily on invertebrates however, little work has been done in determining diet specializations and comparing diets within a community of species. This Thesis focuses on small species of snakes that feed primarily on arthropods in a Chihuahuan Desert community, and will investigate if these are diet generalists or specialists. To this end, stomach contents were examined from preserved specimens of the following species: Rena humilis and Rena dissecta (Leptotyphlopidae), Gyalopion canum …

Growing South Dakota (Winter 2018), College Of Agriculture &. Biological Sciences

Growing South Dakota (Publication of the College of Agriculture, Food and Environmental Sciences)

[Page] 2 Learn About Our Leaders
[Page] 4 Academic Programs at a Glace
[Page] 6 New Precision Ag Major Takes Off
[Page] 9 Raven Gives $5 Million Gift
[Page] 10 New Plant Science Research Facility
[Page] 13 Technical Training to Four-Year Degree
[Page] 15 Ag-Bio Career Fair Hits Record
[Page] 16 Breaking Ground : SD ADRDL
[Page] 19 Distinguished Professor Eric Nelson
[Page] 20 SDSU’s Veterinary Students
[Page] 24 Conservation Planning and Park Management
[Page] 25 Natural Resource Law Enforcement
[Page] 26 Medical Stethoscope Ceremony
[Page] 29 Master’s Degree in Human Biology
[Page] 30 Scott Pedersen Prepares Students
[Page] 32 …

Competition Issues In The Chicken Meat, Chicken Egg, And Pork Markets Of The Philippines, Cenon D. Elca, Prudenciano U. Gordoncillo, Charis Mae T. Neric, Janine P. Curibot

Journal of Public Affairs and Development

This study probed the supply chains of the Philippine markets for chicken meat, chicken egg, and pork; and identified several competition issues that present or may potentially lead to violations of the Philippine Competition Act (PCA). In the chicken meat supply chain, vertical integration in the production segment through contract growing was found to likely lead to an oligopolistic market and possible abuse of dominant position, one of the prohibited acts under PCA. There were reports that such abuse may already be in play in its transportation and consolidation segments. The practice in livestock auction markets to simply formalize pre-arranged …

Sodium Caprate Enables The Blood Pressure-Lowering Effect Of Ile- Pro-Pro And Leu-Lys-Pro In Spontaneously Hypertensive Rats By Indirectly Overcoming Pept1 Inhibition, John Gleeson, Jesus Maria Frias, Sinead Ryan, David J. Braydon

Articles

The tripeptides, Ile-Pro-Pro (IPP) and Leu-Lys-Pro (LKP), inhibit angiotensin-converting enzyme (ACE) resulting in lowered blood pressure. Our hypothesis was that the medium chain fatty acid permeation enhancer, sodium caprate (C10), may prevent the decrease in permeability of the tripeptides when PepT1 is inhibited by glycyl-sarcosine (Gly-Sar), a situation that may occur in the presence of food hydrolysates. Using Caco-2 monolayers and isolated rat jejunal tissue, the apparent permeability coefficients (Papp) of [3H]-IPP and [3H]- LKP were assessed in the presence of Gly-Sar with and without C10. Gly-Sar decreased the Papp of both tripeptides across monolayers and isolated jejunal tissue, but …

Smallholder Farmers, Environmental Change And Adaptation In A Human-Dominated Landscape In The Northern Highlands Of Rwanda, Apollinaire William

Antioch University Dissertations & Theses

Climate change and crop intensification are key challenges to the livelihoods and wellbeing of the majority of rural smallholder farmers in developing countries, particularly in human-dominated, climate-sensitive landscapes such as the northern highlands of Rwanda where issues of fluvial floods, soil erosion pose serious threats to the livelihoods of smallholder farmers. In this mixed methods study conducted between August and December 2015, I explored smallholder farmers’ perceptions by examining what barriers might hinder the process of agroforestry adoption by smallholder farmers, what socio-economic and physical factors and attitudes influence crop choices, motivations for smallholder farmers’ willingness to plant trees within …

From Big Ag To Campus Cafeterias: Intersections Of Food-Supply Networks As Technical Communication Pedagogy, Jessie Lynn Richards, Joshua Lenart, David Sumner, Douglas Christensen

Faculty Publications

This article presents a pedagogical approach to teaching technical and professional writing with an eye toward cultivating awareness and generating informed research among undergraduate students about food production and its various, intricate networks between Big Ag and campus cafeterias. Our pedagogy, influenced by interdisciplinary content, is designed to teach students to differentiate between food processes—such as production versus distribution and consumption—by viewing these networks as communicative practices rather than as inevitable chains or simple functions of one another. Our approach encourages students to locate and analyze differences between interdependent, but seemingly disparate pathways and to make visible communicative intersections that …