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Southern Biosecurity Group Annual Report 2018/19, Southern Biosecurity Group

Recognised Biosecurity Group Annual Reports

Southern Biosecurity Group is a subgroup of the Ravensthorpe Agricultural Initiative Network (RAIN) with the mandate to coordinate control of declared pest species in the Shire of Ravensthorpe. We first began operating in 2002 as the Ravensthorpe Declared Species Group. At that time, our role involved coordinating wild dog control in the shire. We achieved good control of wild dog numbers through a range of activities including dispersing of 1080 baits, trapping and shooting.

Fire Legacies In Eastern Ponderosa Pine Forests, Caleb P. Roberts, Victoria M. Donovan, Carissa L. Wonkka, Larkin A. Powell, Craig R. Allen, David G. Angeler, David A. Wedin, Dirac L. Twidwell Jr

Department of Agronomy and Horticulture: Faculty Publications

Disturbance legacies structure communities and ecological memory, but due to increasing changes in disturbance regimes, it is becoming more difficult to characterize disturbance legacies or determine how long they persist. We sought to quantify the characteristics and persistence of material legacies (e.g., biotic residuals of disturbance) that arise from variation in fire severity in an eastern ponderosa pine forest in North America. We compared forest stand structure and understory woody plant and bird community composition and species richness across unburned, low‐, moderate‐, and high‐severity burn patches in a 27‐year‐old mixed‐severity wildfire that had received minimal post‐fire management. We identified distinct …

Engineering Linear, Branched-Chain Triterpene Metabolism In Monocots, Chase Kempinski, Zuodong Jiang, Garrett Zinck, Shirley J. Sato, Zhengxiang Ge, Thomas E. Clemente, Joseph Chappell

Department of Agronomy and Horticulture: Faculty Publications

Triterpenes are thirty-carbon compounds derived from the universal five-carbon prenyl precursors isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Normally, triterpenes are synthesized via the mevalonate (MVA) pathway operating in the cytoplasm of eukaryotes where DMAPP is condensed with two IPPs to yield farnesyl diphosphate (FPP), catalyzed by FPP synthase (FPS). Squalene synthase (SQS) condenses two molecules of FPP to generate the symmetrical product squalene, the first committed precursor to sterols and most other triterpenes. In the green algae Botryococcus braunii, two FPP molecules can also be condensed in an asymmetric manner yielding the more highly branched triterpene, botryococcene. Botryococcene …

Spatial Variability Of Soil Properties Under Different Land Use In The Dang District Of Nepal, Dinesh Panday, Roshan Babu Ojha, Devraj Chalise, Saurav Das, Bikesh Twanabasu

Department of Agronomy and Horticulture: Faculty Publications

Increased nutrient mining, soil erosion, and limited nutrient management has led to declines in soil quality and reduced productivity in many parts of Nepal. A study was conducted in the eastern part of the Dang district of Nepal in 2015 to assess the variability of selected soil properties of three different land use types (agricultural, agroforestry, and grassland) and to map their spatial distribution. A total of 120 soil samples were collected from 0–15 cm depth and analyzed for soil fertility parameters: pH, organic matter (OM), nitrogen (N), phosphorus (P), potassium (K), boron (B), and zinc (Zn). Results revealed that …

Developments In Agricultural Soil Quality And Health: Reflections By The Research Committee On Soil Organic Matter Management, Michelle M. Wander, Larry J. Cihacek, Mark Coyne, Rhae A. Drijber, Julie M. Grossman, Jessica L. M. Gutknecht, William R. Horwath, Sindhu Jagadamma, Daniel C. Olk, Matt Ruark, Sieglinde S. Snapp, Lisa K. Tiemann, Ray Well, Ronald F. Turco

Department of Agronomy and Horticulture: Faculty Publications

The North Central Education and Research Activity Committee (NCERA-59) was formed in 1952 to address how soil organic matter formation and management practices affect soil structure and productivity. It is in this capacity that we comment on the science supporting soil quality and associated soil health assessment for agricultural lands with the goal of hastening progress in this important field. Even though the suite of soil quality indicators being applied by U.S. soil health efforts closely mirrors the “minimum data set” we developed and recommended in the mid-1990s, we question whether the methods or means for their selection and development …

Predicting Soil Wind Erosion Potential Under Different Corn Residue Management Scenarios In The Central Great Plains, M. K. Rakkar, Humberto Blanco-Canqui, J. Tatarko

Department of Agronomy and Horticulture: Faculty Publications

Various models and simplified equations are available to predict wind erosion potential. However, their performance can be often site-specific, depending on soil characteristics and agronomic practices, warranting sitespecific model validations. Thus, in this study, we 1) validated the wind erodible fraction (WEF) predictive equations by Fryrear et al. (1994) and López et al. (2007) and 2) estimated the total soil loss with the Singleevent Wind Erosion Evaluation Program (SWEEP) using 3-yr measured data from six experiments located across a precipitation gradient in the central Great Plains. Each site had three corn (Zea mays L.) residue removal treatments: control (no …

Utilizing Trait Networks And Structural Equation Models As Tools To Interpret Multi‑Trait Genome‑Wide Association Studies, Mehdi Momen, Malachy T. Campbell, Harkamal Walia, Gota Morota

Department of Agronomy and Horticulture: Faculty Publications

Background: Plant breeders seek to develop cultivars with maximal agronomic value, which is often assessed using numerous, often genetically correlated traits. As intervention on one trait will affect the value of another, breeding decisions should consider the relationships among traits in the context of putative causal structures (i.e., trait networks). While multi-trait genome-wide association studies (MTM-GWAS) can infer putative genetic signals at the multivariate scale, standard MTM-GWAS does not accommodate the network structure of phenotypes, and therefore does not address how the traits are interrelated. We extended the scope of MTM-GWAS by incorporating trait network structures into GWAS using structural …

Joint Use Of Genome, Pedigree, And Their Interaction With Environment For Predicting The Performance Of Wheat Lines In New Environments, Réka Howard, Daniel Gianola, Osval Montesinos-Lopez, Philomin Juliana, Ravi Singh, Jesse Poland, Sandesh Shrestha, Paulino Pérez-Rodriguez, José Crossa, Diego Jarquin

Department of Agronomy and Horticulture: Faculty Publications

Genome-enabled prediction plays an essential role in wheat breeding because it has the potential to increase the rate of genetic gain relative to traditional phenotypic and pedigree-based selection. Since the performance of wheat lines is highly influenced by environmental stimuli, it is important to accurately model the environment and its interaction with genetic factors in prediction models. Arguably, multi-environmental best linear unbiased prediction (BLUP) may deliver better prediction performance than single-environment genomic BLUP. We evaluated pedigree and genome-based prediction using 35,403 wheat lines from the Global Wheat Breeding Program of the International Maize and Wheat Improvement Center (CIMMYT). We implemented …

A World Of Cobenefits: Solving The Global Nitrogen Challenge, Benjamin Z. Houlton, Maya Almaraz, Viney Aneja, Amy T. Austin, Edith Bai, Kenneth G. Cassman, Jana E. Compton, Eric A. Davidson, Jan Willem Erisman, James N. Galloway, Baojing Gu, Guolin Yao, Luiz A. Martinelli, Kate Scow, William H. Schlesinger, Thomas P. Tomich, Chao Wang, Xin Zhang

Department of Agronomy and Horticulture: Faculty Publications

Nitrogen is a critical component of the economy, food security, and planetary health. Many of the world's sustainability targets hinge on global nitrogen solutions, which, in turn, contribute lasting benefits for (i) world hunger; (ii) soil, air, and water quality; (iii) climate change mitigation; and (iv) biodiversity conservation. Balancing the projected rise in agricultural nitrogen demands while achieving these 21st century ideals will require policies to coordinate solutions among technologies, consumer choice, and socioeconomic transformation.

History Of Grass Breeding For Grazing Lands In The Northern Great Plains Of The Usa And Canada, Kenneth P. Vogel, John Hendrickson

Department of Agronomy and Horticulture: Faculty Publications

• In the early 1930s there were millions of acres of extensively degraded grazing lands and abandoned and eroded cropland in the Northern Plains of the United States and Canada.

• Grass breeding and plant materials programs were established by both the US and Canadian governments and cooperating universities to develop revegetation materials.

• Efforts of a small number of research locations and people resulted in grass cultivars or varieties that were used to revegetate and preserve the soil on millions of acres of land.

• This is a brief history of the people, agencies, and universities that developed these …

Context-Specific Genomic Selection Strategies Outperform Phenotypic Selection For Soybean Quantitative Traits In The Progeny Row Stage, Christopher J. Smallwood, Arnold M. Saxton, Jason D. Gillman, Hem S. Bhandari, Phillip A. Wadl, Benjamin D. Fallen, David L. Hyten, Qijian Song, Vincent R. Pantalone

Department of Agronomy and Horticulture: Faculty Publications

Evaluating different breeding selection strategies for relative utility is necessary to choose those that maximize efficiency. Soybean [Glycine max (L.) Merr.] seed yield and fatty acid, protein, and oil contents are all commercially important traits that display complex quantitative inheritance. A soybean population consisting of 860 F₅–derived recombinant inbred lines (RILs), genotyped with 4867 polymorphic single nucleotide polymorphism (SNPs) was used to compare phenotypic and context specific genomic selection (GS) strategies. To simulate progeny rows, each RIL was grown in a single plot in 2010 in Knoxville, TN, and phenotype was recorded. A subset of 276 RILs …

Cover Crops And Corn Residue Removal: Impacts On Soil Hydraulic Properties And Their Relationships With Carbon, Michael Sindelar, Humberto Blanco-Canqui, Virginia L. Jin, Richard B. Ferguson

Department of Agronomy and Horticulture: Faculty Publications

Large-scale crop residue removal may negatively affect soil water dynamics. Integrating cover crop (CC) with crop residue management can be a strategy to offset potential adverse effects of residue removal. We studied: (i) the impact of corn (Zea mays L.) residue removal (56%) with and without the use of winter rye (Secale cereale L.) CC on soil hydraulic properties, (ii) whether CC would ameliorate residue removal effects on hydraulic properties, and (iii) relationships of hydraulic properties with soil organic C (SOC) and other properties under irrigated no-till continuous corn on a silt loam in south central Nebraska after …

Predicting Longitudinal Traits Derived From High-Throughput Phenomics In Contrasting Environments Using Genomic Legendre Polynomials And B-Splines, Mehdi Momen, Malachy T. Campbell, Harkamal Walia, Gota Morota

Department of Agronomy and Horticulture: Faculty Publications

Recent advancements in phenomics coupled with increased output from sequencing technologies can create the platform needed to rapidly increase abiotic stress tolerance of crops, which increasingly face productivity challenges due to climate change. In particular, high-throughput phenotyping (HTP) enables researchers to generate large-scale data with temporal resolution. Recently, a random regression model (RRM) was used to model a longitudinal rice projected shoot area (PSA) dataset in an optimal growth environment. However, the utility of RRM is still unknown for phenotypic trajectories obtained from stress environments. Here, we sought to apply RRM to forecast the rice PSA in control and water-limited …

Shifting Avian Spatial Regimes In A Changing Climate, Caleb P. Roberts, Craig R. Allen, David G. Angeler, Dirac Twidwell

Department of Agronomy and Horticulture: Faculty Publications

In the present era of rapid global change, development of early warnings of ecological regime shifts is a major focus in ecology. Identifying and tracking shifts in spatial regimes is a new approach with potential to enhance understanding of ecological responses to global change. Here, we show strong directional non-stationarity of spatial regimes identified by avian community body mass data. We do this by tracking 46 years of avian spatial regime movement in the North American Great Plains. The northernmost spatial regime boundary moved >590 km northward, and the southernmost boundary moved >260 km northward. Tracking spatial regimes affords decadal …

The Mitochondrial Genome Of Eleusine Indica And Characterization Of Gene Content Within Poaceae, Nathan D. Hall, Hui Zhang, Jeffrey P. Mower, Joseph Scott Mcelroy, Leslie R. Goertzen

Department of Agronomy and Horticulture: Faculty Publications

Plant mitochondrial (mt) genome assembly provides baseline data on size, structure, and gene content, but resolving the sequence of these large and complex organelle genomes remains challenging due to fragmentation, frequent recombination, and transfers of DNA from neighboring plastids. Themt genome for Eleusine indica (Poaceae: goosegrass) is comprehensibly analyzed here, providing key reference data for an economically significant invasive species that is also the maternal parent of the allotetraploid crop Finger millet (Eleusine coracana). The assembled E. indica genome contains 33 protein coding genes, 6 rRNA subunits, 24 tRNA, 8 large repetitive regions 15 kb of transposable elements across a …

Identification Of Sero-Diagnostic Antigens For The Early Diagnosis Of Johne’S Disease Using Map Protein Microarrays, Lingling Li, J. P. Bannantine, Joseph J. Campo, Arlo Randall, Yrjo T. Grohn, Megan A. Schilling, Robab Katani, Jessica Radzio-Basu, Laurel Easterling, Vivek Kapur

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Considerable effort has been directed toward controlling Johne’s disease (JD), a chronic granulomatous intestinal inflammatory disease caused by Mycobacterium avium subsp. paratuberculosis (MAP) in cattle and other ruminants. However, progress in controlling the spread of MAP infection has been impeded by the lack of reliable diagnostic tests that can identify animals early in the infection process and help break the transmission chain. To identify reliable antigens for early diagnosis of MAP infection, we constructed a MAP protein array with 868 purified recombinant MAP proteins, and screened a total of 180 well-characterized serum samples from cows assigned to 4 groups based …

Quantification Of Macrophages And Mycobacterium Avium Subsp. Paratuberculosis In Bovine Intestinal Tissue During Different Stages Of Johne’S Disease, Caitlin J. Jenvey, Jesse M. Hostetter, Adrienne L. Shircliff, John Bannantine, Judith R. Stabel

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Johne’s disease is an enteric disease caused by the intracellular pathogen Mycobacterium avium subsp. paratuberculosis (MAP). Upon ingestion of MAP, it is translocated across the intestinal epithelium and may be killed by intestinal macrophages, or depending on the bacterial burden and immunological status of the animal, MAP may thwart innate defense mechanisms and persist within the macrophage. This study aimed to determine the numbers of macrophages and MAP present in bovine midileal tissue during different stages of infection. Immunofluorescent (IF) labeling was performed on frozen bovine midileal intestinal tissue collected from 28 Holstein dairy cows. The number of macrophages in …

Wolves: A Primer For Ranchers, John Williams, Douglas E. Johnson, Patrick E. Clark, Larry L. Larson, Tyanne J. Roland

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Ranch management has become more complex since wolves were reintroduced into Idaho and Wyoming in 1996. In wolf areas, livestock have experienced increased death loss and greater stress. Increased livestock aggressiveness has been observed, especially toward working dogs, making handling livestock more difficult. Additionally ranchers have reported a loss of body condition, lower conception rates, increased time and expense for management. Our study was designed to investigate the effect of wolf presence on cattle behavior, landscape use patterns, and resource selection by comparing high wolf density areas against low wolf density areas. This study also generated baseline information on cattle …

Spatial Associations Of Livestock Guardian Dogs And Domestic Sheep, Julie Young, John P. Draper, Daniel Kinka

Human–Wildlife Interactions

Livestock guardian dogs (Canis lupus familiaris; LGDs) have been used for centuries to protect livestock, primarily domestic sheep (Ovis aries), from depredation by large carnivores. While previous studies have shown their efficacy, the mechanisms in which LGDs protect livestock have largely remained unstudied. Livestock guardian dogs are often considered to be effective only if they remain in spatial proximity to the livestock they are protecting. We determined space use of LGDs relative to domestic sheep on open-range grazing allotments used by working ranches in the Rocky Mountains area of the northwest United States between August 2012 …

A Review Of Rat Lungworm Infection And Recent Data On Its Definitive Hosts In Hawaii, Chris N. Niebuhr, Susan I. Jarvi, Shane R. Siers

Human–Wildlife Interactions

Rat lungworm (Angiostrongylus cantonensis) is a zoonotic nematode that causes rat lungworm disease (angiostrongyliasis), a potentially debilitating form of meningitis, in humans worldwide. The definitive hosts for rat lungworm are primarily members of the genus Rattus, with gastropods as intermediate hosts. This parasite has emerged as an important public health concern in the United States, especially in Hawaii, where the number of human cases has increased in the last decade. Here we discuss the current knowledge of the rat lungworm, including information on the life cycle and host species, as well as updates on known infection levels. Three …

Application Strategy For An Anthraquinone-Based Repellent And The Protection Of Soybeans From Canada Goose Depredation, Scott J. Werner, Matthew Gottlob, Charles D. Dieter, Joshua D. Stafford

Human–Wildlife Interactions

Agricultural crops can sustain extensive damage caused by Canada geese (Branta canadensis) when these crops are planted near wetlands or brood-rearing sites. From 2000 to 2015, South Dakota Game, Fish and Parks spent >$5.6 million to manage damages caused by Canada geese to agricultural crops (primarily soybeans) in South Dakota, USA. For the purpose of developing a repellent application strategy for nonlethal goose damage management, we comparatively evaluated the width of anthraquinone applications (i.e., 9.4 L Flight Control^® Plus goose repellent/ha [active ingredient: 50% 9,10-anthraquinone] at 0–36 m versus 0–73 m perpendicular to the edge of wetlands …

European Starlings Fly Before They Fledge, Jeremiah L. Psiropoulos, Lisa A. Selner

Human–Wildlife Interactions

Aircraft bird strikes are increasing globally. Bird strikes constitute a major human health and safety risk and result in millions of dollars in economic impacts. Invasive avian species, such as the European starling (Sturnus vulgaris; starlings), have been implicated in bird strikes in North America. Because this species is highly adaptive and has been successful at establishing in new areas, such as airports, it is essential that managers better understand the potential risks and how to mitigate them. Herein we present a case study regarding a novel observation of unique starling nesting behavior that may pose a risk …

Cost–Benefit Analysis Of Coyote Removal As A Management Option In Texas Cattle Ranching, R. Kyle Brewster, Scott E. Henke, Benjamin L. Turner, John M. Tomeček, Alfonso Ortega-S.

Human–Wildlife Interactions

The monetary value of livestock losses attributed to coyote (Canis latrans) predation in North America has increased during the past 20 years. In Texas, USA alone in 2011, these loses were estimated at $6.9 million. To mitigate coyote-related livestock losses, several lethal and nonlethal control methods have been developed. However, there remains a need for better information to guide management decisions regarding cost-effective predator control strategies for livestock production systems. We acquired data, which was used in the model, from published literature from 1960 to present day, subject matter experts, and anecdotal information on coyote ecology. We developed …

Conservation Agriculture In The Heartland: Farmer Perceptions Of Soil Health And The Adoption Of Cover Crops, Lillian Clarissa Cobo

Graduate Research Theses & Dissertations

The benefits of cover crops are widely recognized by those interested in conservation agriculture and soil health. These benefits include soil erosion control, nutrient loss reduction, and overall improvement of soil health. However, while these benefits are well-documented, the adoption rate of cover crops in the American Heartland remains astoundingly low. While some studies have attempted to determine the reasons for this low adoption rate, the information relating to how farmer perceptions of soil health impact cover crop adoption is almost nonexistent. Furthermore, there is a clear absence of mixed method studies in the literature relating to this subject. This …

Farm To Label: A Critique Of Consumer Activism In The Sustainable Food Movement, Olivia Whitener

Pomona Senior Theses

“Local,” “organic,” “natural,” and “Fairtrade” are just several of the many claims adorning the food products that line grocery store shelves. These promises of environmental sustainability and social responsibility are pillars of the “good food revolution” sweeping the nation as consumers demand alternatives to the products of the industrial food system. Green consumerism, the premise that consumer demand for environmentally sustainable goods will bring about ecologically beneficial outcomes, is at the heart of the sustainable food movement. This thesis takes a critical look at the operation of green consumerism in the food system. It explores the ideology and shortcomings of …

Blasting The Farm: Chemical High Explosives And The Rise Of Industrial Agriculture, 1867-1930, Patrick Benjamin Swart

Graduate Student Theses, Dissertations, & Professional Papers

No abstract provided.

Attainment And Maintenance Of Pubertal Cyclicity May Predict High A4 Cows With Reduced Fertility, Sarah Nafziger

Department of Animal Science: Dissertations, Theses, and Student Research

Puberty attainment was investigated in heifers. Blood samples were collected from weaning until breeding during 6 years from heifers born in 2012-2017. Plasma progesterone concentrations ≥ 1 ng/ml were used to indicate cyclicity, and heifers were categorized into one of four puberty groups using SAS: 1) Early heifers reached puberty before March 12 and cycled continuously during the sampling period, 2) Typical heifers reached puberty on or after March 12 and cycled continuously, 3) Start-Stop heifers had at least one occurrence of progesterone ≥ 1 ng/ml but discontinued cycling during the sampling period, and 4) Non-Cycling heifers had no occurrence …

Growing South Dakota (Winter 2019), College Of Agriculture, Food And Environmental Sciences

Growing South Dakota (Publication of the College of Agriculture, Food and Environmental Sciences)

This is issue contains the South Dakota Agricultural Experiment Station 2018 Annual Report, and the SDSU Extension 2018 Annual Report.

[Page] 2 Setting Into role as Dean
[Page] 4 Raven Precision Ag Center Groundbreaking Ceremony
[Page] 10 Collaborating for Research-Based Solutions
[Page] 12 From the SDSU Extension Director
[Page] 14 Empowering South Dakotans Through Training and Certifications
[Page] 18 Mental Health and Opioid Education
[Page] 21 Science of Agriculture
[Page] 23 Community Gardens Bring Hope to Pine Ridge Indian Reservation
[Page] 26 Energize! Conference
[Page} 28 Disaster Preparedness Training
[Page] 30 Bush Foundation Change Network
[Page] 32 SDSU to Participate …

Production And Marketing Of Indigenous Cash Crops: The Experience Of Women Farmer-Entrepreneurs In Mountain Province, Philippines, Joyce D. Cuyangoan

Journal of Public Affairs and Development

This study focused on the production factors and marketing mix of five indigenous cash crops cultivated by 67 women farmer- entrepreneurs in the municipalities of Tadian and Lower Bauko in Mountain Province, Philippines. The study used descriptive statistics and applied profit analysis in the analysis of its findings. Results of this study show that the factors that limit the respondents’ production are limited access to transportation, rainfed irrigation, and limited access to agricultural inputs and loans. In marketing their produce, it was found that the respondents have limited knowledge on processing, packaging, labeling, promoting and financial record keeping. They can …

The Drones' Impact On Precision Agriculture, Ibrahim Naji

Open Access Theses & Dissertations

A study to assess the overall impact of drones in the agricultural sector. The specific goal of this research was to provide a drone system to ward off pestering birds from crops to allow for better growth and an increased yield. Along with providing a user-friendly coded drone system for farmers that is cost effective, this project has inspired other areas of use for the drone.